CsGy1G006470 (gene) Cucumber (Gy14) v2

Overview
NameCsGy1G006470
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr1 : 4220228 .. 4220836 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAGTGTTTGGCGAAACCTTATGAGGATTGATAGAGCCAAGGAGGCAAGTGTTAGGCAATGTAGAGTGAGAAACATATACAAACACATAAAACCTGACCATGAAAGCGCTGGACAACACCGTGACAAACATGCTCGCCTTGAAGTTATCAAACATGTCTTACAAACCTCATATTTCGGTTTCTTTTTTTTTTACTTTCTTGACTCGGTTTGGTCACTAAACAAACGACTTCGTAGAGGTTTCTCTAGGCAAAGTCTCAAGGTTCAAGAATAAGGTAAAGTTCGAGGAAGAACATAGGTTGCATTGAAGTTTTGCATGTTGCAAAAGAGAGTGAGACCTTTGGGTTTCGGGTGTTGGGTTGACTAGTCGAGTTTGTTTTTCTCAATAGAAAAATAACTTGAGAATTGCGTGTTTCAAAGAAAAAAGTGAGACCTTTTGGTTTTGGGTTGAATAGTCGAGTTGGTAGATTTTCCTCAAAGGGAAAATAATTTAAGAATTTGCATGTTCCAAAAGGAAAAATGAGATCCTCGAGTTATAGGTCAACTAATCAAGTTAGTAGAATTGTTTAGAAGGAAAAATAACATAACCAAGCTTCCTTTCCACTAG

mRNA sequence

ATGGCAAGTGTTTGGCGAAACCTTATGAGGATTGATAGAGCCAAGGAGGCAAGTGTTAGGCAATGTAGAGTGAGAAACATATACAAACACATAAAACCTGACCATGAAAGCGCTGGACAACACCGTGACAAACATGCTCGCCTTGAAGTTATCAAACATGTCTTACAAACCTCATATTTCGGTTTCTTTTTTTTTTACTTTCTTGACTCGGTTTGGTCACTAAACAAACGACTTCGTAGAGGTTTCTCTAGGCAAAGTCTCAAGAAAAAAGTGAGACCTTTTGGTTTTGGGTTGAATAGTCGAGTTGGTCAACTAATCAAGTTAGTAGAATTGTTTAGAAGGAAAAATAACATAACCAAGCTTCCTTTCCACTAG

Coding sequence (CDS)

ATGGCAAGTGTTTGGCGAAACCTTATGAGGATTGATAGAGCCAAGGAGGCAAGTGTTAGGCAATGTAGAGTGAGAAACATATACAAACACATAAAACCTGACCATGAAAGCGCTGGACAACACCGTGACAAACATGCTCGCCTTGAAGTTATCAAACATGTCTTACAAACCTCATATTTCGGTTTCTTTTTTTTTTACTTTCTTGACTCGGTTTGGTCACTAAACAAACGACTTCGTAGAGGTTTCTCTAGGCAAAGTCTCAAGAAAAAAGTGAGACCTTTTGGTTTTGGGTTGAATAGTCGAGTTGGTCAACTAATCAAGTTAGTAGAATTGTTTAGAAGGAAAAATAACATAACCAAGCTTCCTTTCCACTAG

Protein sequence

MASVWRNLMRIDRAKEASVRQCRVRNIYKHIKPDHESAGQHRDKHARLEVIKHVLQTSYFGFFFFYFLDSVWSLNKRLRRGFSRQSLKKKVRPFGFGLNSRVGQLIKLVELFRRKNNITKLPFH
Homology
[Close]
BLAST of CsGy1G006470 vs. NCBI nr
Match: KGN64118.1 (hypothetical protein Csa_1G042300 [Cucumis sativus])

HSP 1 Score: 103.2 bits (256), Expect = 6.4e-19
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0 

Query: 1  MASVWRNLMRIDRAKEASVRQCRVRNIYKHIKPDHESAGQHRDKHARLE 50
          MASVWRNLMRIDRAKEASVRQCRVRNIYKHIKPDHESAGQHRDKHARLE
Sbjct: 1  MASVWRNLMRIDRAKEASVRQCRVRNIYKHIKPDHESAGQHRDKHARLE 49

[Close]
BLAST of CsGy1G006470 vs. TrEMBL
Match: tr|A0A0A0LQS1|A0A0A0LQS1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042300 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 4.3e-19
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0 

Query: 1  MASVWRNLMRIDRAKEASVRQCRVRNIYKHIKPDHESAGQHRDKHARLE 50
          MASVWRNLMRIDRAKEASVRQCRVRNIYKHIKPDHESAGQHRDKHARLE
Sbjct: 1  MASVWRNLMRIDRAKEASVRQCRVRNIYKHIKPDHESAGQHRDKHARLE 49

The following BLAST results are available for this feature:
BLAST of CsGy1G006470 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64118.16.4e-19100.00hypothetical protein Csa_1G042300 [Cucumis sativus][more]
BLAST of CsGy1G006470 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy1G006470 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy1G006470 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LQS1|A0A0A0LQS1_CUCSA4.3e-19100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042300 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G006470.1CsGy1G006470.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy1G006470Csa1G042300Cucumber (Chinese Long) v2cgybcuB001
CsGy1G006470CSPI01G06740Wild cucumber (PI 183967)cgybcpiB001
CsGy1G006470CsaV3_1G006610Cucumber (Chinese Long) v3cgybcucB002
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy1G006470Watermelon (97103) v2cgybwmbB053
CsGy1G006470Watermelon (97103) v2cgybwmbB078
CsGy1G006470Wax gourdcgybwgoB013
CsGy1G006470Wax gourdcgybwgoB025
CsGy1G006470Cucumber (Gy14) v2cgybcgybB002
CsGy1G006470Cucumber (Gy14) v2cgybcgybB027
CsGy1G006470Cucurbita maxima (Rimu)cgybcmaB023
CsGy1G006470Cucurbita maxima (Rimu)cgybcmaB030
CsGy1G006470Cucurbita maxima (Rimu)cgybcmaB073
CsGy1G006470Cucurbita maxima (Rimu)cgybcmaB085
CsGy1G006470Cucurbita moschata (Rifu)cgybcmoB024
CsGy1G006470Cucurbita moschata (Rifu)cgybcmoB029
CsGy1G006470Cucurbita moschata (Rifu)cgybcmoB067
CsGy1G006470Cucurbita moschata (Rifu)cgybcmoB082
CsGy1G006470Cucurbita pepo (Zucchini)cgybcpeB018
CsGy1G006470Cucurbita pepo (Zucchini)cgybcpeB046
CsGy1G006470Cucurbita pepo (Zucchini)cgybcpeB069
CsGy1G006470Cucurbita pepo (Zucchini)cgybcpeB128
CsGy1G006470Cucumber (Chinese Long) v2cgybcuB005
CsGy1G006470Bottle gourd (USVL1VR-Ls)cgyblsiB018
CsGy1G006470Bottle gourd (USVL1VR-Ls)cgyblsiB069
CsGy1G006470Melon (DHL92) v3.5.1cgybmeB022
CsGy1G006470Melon (DHL92) v3.5.1cgybmeB052
CsGy1G006470Melon (DHL92) v3.6.1cgybmedB020
CsGy1G006470Melon (DHL92) v3.6.1cgybmedB046
CsGy1G006470Watermelon (Charleston Gray)cgybwcgB053
CsGy1G006470Watermelon (Charleston Gray)cgybwcgB080
CsGy1G006470Watermelon (97103) v1cgybwmB064
CsGy1G006470Watermelon (97103) v1cgybwmB096
CsGy1G006470Wild cucumber (PI 183967)cgybcpiB005
CsGy1G006470Silver-seed gourdcarcgybB0393
CsGy1G006470Silver-seed gourdcarcgybB0469
CsGy1G006470Silver-seed gourdcarcgybB0518
CsGy1G006470Silver-seed gourdcarcgybB0595
CsGy1G006470Cucumber (Chinese Long) v3cgybcucB003