Csa1G039310 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G039310
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 3881822 .. 3883452 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACAGGCTCTTTTCTCTTTCTCGCATCCTTGCATCAAGGCTCTCGAATTCCTTTCCCACTCCAACTCTCGACATTGTAAGAATTACGCTTCTTTTGCCACACAAGTGAGAACCCATAAACTCACCTCTTTCCCTCATTCCTCACTCGCCCACTTCAGGATCACTCCCGTTCATGGAGTTCTCATCCAAGTTTTGCCGAGAAAATTTATGGGTTTCTCTCAGTTCCGGCCGCCGGAAAGCGATTCATCTTCAATACTTCAAATACCCTTTTCAGGAAGAGTCTAGAACAAATTAGGTCTGAGTTGAAACTAGCTTTTGATCATCAATGGGGAGGCAGGTAATGTGTTTATTCTTTTTCCAACTTTGGCTGTTTTATCAGAACAATTTAACTCCTTGCATGTATAAACGAATTCATACATGAAGAACGTGAAGTCCTTTTGTGTCCAGAATTTCATTTTTACATCGTGCATTCGGATTTTCCCAATTGTATTGTTCTGTTGAAGTTTGCAAACGAAGAACAATTGTTGTGTTGATTACTACTGGAAATGGCATGAGGAAATTGTGAAACTTCTAACTTGGTTAGATCAGTTCAGCCACTTTAATTTCTTTGTACCCAGTTAGTGCAGTTTCACTAAATATTATATGGGTTTTGTGTAAATATTATAACACAAACGGTTATCATTTGATATTGGGAGTTCTTGAAATTTTTGGAACCTGATTTTTACAATTGTAGGGATAACATGATGATGCCTTCTGTTTCATAGGCACTAGCATTGTATTTTAGGTGTCCCCCATGGCATATAGACTCTTACTGCTTGCTGTTATGAAACTTCATTCTTTGTTATTTTAGGATTAGCATTGTTATTATATATAATGGGTTACTTTAAGTTATATCATATACCAAAATAATTTCGTAACCTTCTACATTTGAAACGGCTTGGTGAATCCTTTATTATTGAATACAATTAAACTGTTTATAGTCCTTTTAACAACGGGGAGGATGCTTGGCATCTGATAAACAAAGTTGATTATTTGGGGAAAGTTCTTATTTGGTTGGATATGAGACTTTGTTCCTTTAACCTTACATACATTTTACTGATCACATTCGACTTTCAAACATCAATATACTTATTAGAATTTGAATAATCATTGGTGTTCGTTTTGCTTTATCACTTAGGGTGTGAGTGGAGCCGTAAATGCTCTCATATTGCTTCATATATTCTTCTTCCCAAATTCGACGCTCAGTATCAAATTCTTCAGACCTGTTCTTGCCATCTTACTCGTATGCAGAACTCTAAACAGCATAAAGATTCACAGTTTACTATGAAAAATCCTGAAAGAGTTCTTGATGGTCTCATTACGGGCAGTTTTATCATTGGAGTGGACATGTTGAGGCTACCAGAGGTACGATGTTGACTAAACTTTTCTATCCAACTCCATGTTGAGTTCTCTTCTCTGTCACATATAGCTGATCTCCTCCTGTTAGGCAAATTCATAAAATTTGTATGTTCACTGCAGAATGACAACCAAATTTCAAGATCCATCCACCTGTGGGGTACTGCATTTCCAGCCTCAATCCATGCCCTTTCTGAATATCAGAAGAACTTCCATACTCGAAACTATGTTTGA

mRNA sequence

ATGAACAGGCTCTTTTCTCTTTCTCGCATCCTTGCATCAAGGCTCTCGAATTCCTTTCCCACTCCAACTCTCGACATTGATCACTCCCGTTCATGGAGTTCTCATCCAAGTTTTGCCGAGAAAATTTATGGGTTTCTCTCAGTTCCGGCCGCCGGAAAGCGATTCATCTTCAATACTTCAAATACCCTTTTCAGGAAGAGTCTAGAACAAATTAGGTCTGAGTTGAAACTAGCTTTTGATCATCAATGGGGAGGCAGTTTGCAAACGAAGAACAATTGTTGTGTTGATTACTACTGGAAATGGCATGAGGAAATTGTGAAACTTCTAACTTGGTTAGATCAGTTCAGCCACTTTAATTTCTTTGTACCCAGGTGTGAGTGGAGCCGTAAATGCTCTCATATTGCTTCATATATTCTTCTTCCCAAATTCGACGCTCAGTATCAAATTCTTCAGACCTGTTCTTGCCATCTTACTCGTATGCAGAACTCTAAACAGCATAAAGATTCACAGTTTACTATGAAAAATCCTGAAAGAGTTCTTGATGGTCTCATTACGGGCAGTTTTATCATTGGAGTGGACATGTTGAGGCTACCAGAGAATGACAACCAAATTTCAAGATCCATCCACCTGTGGGGTACTGCATTTCCAGCCTCAATCCATGCCCTTTCTGAATATCAGAAGAACTTCCATACTCGAAACTATGTTTGA

Coding sequence (CDS)

ATGAACAGGCTCTTTTCTCTTTCTCGCATCCTTGCATCAAGGCTCTCGAATTCCTTTCCCACTCCAACTCTCGACATTGATCACTCCCGTTCATGGAGTTCTCATCCAAGTTTTGCCGAGAAAATTTATGGGTTTCTCTCAGTTCCGGCCGCCGGAAAGCGATTCATCTTCAATACTTCAAATACCCTTTTCAGGAAGAGTCTAGAACAAATTAGGTCTGAGTTGAAACTAGCTTTTGATCATCAATGGGGAGGCAGTTTGCAAACGAAGAACAATTGTTGTGTTGATTACTACTGGAAATGGCATGAGGAAATTGTGAAACTTCTAACTTGGTTAGATCAGTTCAGCCACTTTAATTTCTTTGTACCCAGGTGTGAGTGGAGCCGTAAATGCTCTCATATTGCTTCATATATTCTTCTTCCCAAATTCGACGCTCAGTATCAAATTCTTCAGACCTGTTCTTGCCATCTTACTCGTATGCAGAACTCTAAACAGCATAAAGATTCACAGTTTACTATGAAAAATCCTGAAAGAGTTCTTGATGGTCTCATTACGGGCAGTTTTATCATTGGAGTGGACATGTTGAGGCTACCAGAGAATGACAACCAAATTTCAAGATCCATCCACCTGTGGGGTACTGCATTTCCAGCCTCAATCCATGCCCTTTCTGAATATCAGAAGAACTTCCATACTCGAAACTATGTTTGA

Protein sequence

MNRLFSLSRILASRLSNSFPTPTLDIDHSRSWSSHPSFAEKIYGFLSVPAAGKRFIFNTSNTLFRKSLEQIRSELKLAFDHQWGGSLQTKNNCCVDYYWKWHEEIVKLLTWLDQFSHFNFFVPRCEWSRKCSHIASYILLPKFDAQYQILQTCSCHLTRMQNSKQHKDSQFTMKNPERVLDGLITGSFIIGVDMLRLPENDNQISRSIHLWGTAFPASIHALSEYQKNFHTRNYV*
Homology
[Close]
BLAST of Csa1G039310 vs. TrEMBL
Match: A0A0A0LVM8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G039310 PE=4 SV=1)

HSP 1 Score: 494.2 bits (1271), Expect = 8.8e-137
Identity = 235/235 (100.00%), Postives = 235/235 (100.00%), Query Frame = 1 

Query: 1   MNRLFSLSRILASRLSNSFPTPTLDIDHSRSWSSHPSFAEKIYGFLSVPAAGKRFIFNTS 60
           MNRLFSLSRILASRLSNSFPTPTLDIDHSRSWSSHPSFAEKIYGFLSVPAAGKRFIFNTS
Sbjct: 1   MNRLFSLSRILASRLSNSFPTPTLDIDHSRSWSSHPSFAEKIYGFLSVPAAGKRFIFNTS 60

Query: 61  NTLFRKSLEQIRSELKLAFDHQWGGSLQTKNNCCVDYYWKWHEEIVKLLTWLDQFSHFNF 120
           NTLFRKSLEQIRSELKLAFDHQWGGSLQTKNNCCVDYYWKWHEEIVKLLTWLDQFSHFNF
Sbjct: 61  NTLFRKSLEQIRSELKLAFDHQWGGSLQTKNNCCVDYYWKWHEEIVKLLTWLDQFSHFNF 120

Query: 121 FVPRCEWSRKCSHIASYILLPKFDAQYQILQTCSCHLTRMQNSKQHKDSQFTMKNPERVL 180
           FVPRCEWSRKCSHIASYILLPKFDAQYQILQTCSCHLTRMQNSKQHKDSQFTMKNPERVL
Sbjct: 121 FVPRCEWSRKCSHIASYILLPKFDAQYQILQTCSCHLTRMQNSKQHKDSQFTMKNPERVL 180

Query: 181 DGLITGSFIIGVDMLRLPENDNQISRSIHLWGTAFPASIHALSEYQKNFHTRNYV 236
           DGLITGSFIIGVDMLRLPENDNQISRSIHLWGTAFPASIHALSEYQKNFHTRNYV
Sbjct: 181 DGLITGSFIIGVDMLRLPENDNQISRSIHLWGTAFPASIHALSEYQKNFHTRNYV 235

[Close]
BLAST of Csa1G039310 vs. TrEMBL
Match: A0A0A0LTI7_CUCSA (Rhomboid-like protein OS=Cucumis sativus GN=Csa_1G039320 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 5.2e-12
Identity = 53/128 (41.41%), Postives = 65/128 (50.78%), Query Frame = 1 

Query: 1   MNRLFSLSRILASRLSNSFPTPTLDI----------------------------DHSRSW 60
           MN+LFS  R L SRLSNS+   +LD                             DHSRSW
Sbjct: 1   MNKLFS--RKLVSRLSNSYAN-SLDCKDCASFSTLVRTHNQNHLFGSFVTRPIQDHSRSW 60

Query: 61  SSHPSFAEKIYGFLSVPAAGKRFIFNTSNTLFRKSLE---------------QIRSELKL 86
           SSH SFA+KI+GF SVP  GKRFI N SNT F+ S++               +++ +LK 
Sbjct: 61  SSHRSFAQKIHGFFSVPVVGKRFIVNPSNTYFKGSMKSVVESRSLFTGTPFSKLKFQLKP 120

[Close]
BLAST of Csa1G039310 vs. TrEMBL
Match: A0A0A0LTI7_CUCSA (Rhomboid-like protein OS=Cucumis sativus GN=Csa_1G039320 PE=3 SV=1)

HSP 1 Score: 41.6 bits (96), Expect = 1.6e+00
Identity = 20/35 (57.14%), Postives = 25/35 (71.43%), Query Frame = 1 

Query: 183 LITGSFIIGVDMLRLPENDNQISRSIHLWGTAFPA 218
           ++ G F+IG DMLR+ END+QIS S HL G A  A
Sbjct: 291 ILLGIFLIGKDMLRMLENDSQISGSAHLGGAAVAA 325

[Close]
BLAST of Csa1G039310 vs. NCBI nr
Match: gi|700208970|gb|KGN64066.1| (hypothetical protein Csa_1G039310 [Cucumis sativus])

HSP 1 Score: 494.2 bits (1271), Expect = 1.3e-136
Identity = 235/235 (100.00%), Postives = 235/235 (100.00%), Query Frame = 1 

Query: 1   MNRLFSLSRILASRLSNSFPTPTLDIDHSRSWSSHPSFAEKIYGFLSVPAAGKRFIFNTS 60
           MNRLFSLSRILASRLSNSFPTPTLDIDHSRSWSSHPSFAEKIYGFLSVPAAGKRFIFNTS
Sbjct: 1   MNRLFSLSRILASRLSNSFPTPTLDIDHSRSWSSHPSFAEKIYGFLSVPAAGKRFIFNTS 60

Query: 61  NTLFRKSLEQIRSELKLAFDHQWGGSLQTKNNCCVDYYWKWHEEIVKLLTWLDQFSHFNF 120
           NTLFRKSLEQIRSELKLAFDHQWGGSLQTKNNCCVDYYWKWHEEIVKLLTWLDQFSHFNF
Sbjct: 61  NTLFRKSLEQIRSELKLAFDHQWGGSLQTKNNCCVDYYWKWHEEIVKLLTWLDQFSHFNF 120

Query: 121 FVPRCEWSRKCSHIASYILLPKFDAQYQILQTCSCHLTRMQNSKQHKDSQFTMKNPERVL 180
           FVPRCEWSRKCSHIASYILLPKFDAQYQILQTCSCHLTRMQNSKQHKDSQFTMKNPERVL
Sbjct: 121 FVPRCEWSRKCSHIASYILLPKFDAQYQILQTCSCHLTRMQNSKQHKDSQFTMKNPERVL 180

Query: 181 DGLITGSFIIGVDMLRLPENDNQISRSIHLWGTAFPASIHALSEYQKNFHTRNYV 236
           DGLITGSFIIGVDMLRLPENDNQISRSIHLWGTAFPASIHALSEYQKNFHTRNYV
Sbjct: 181 DGLITGSFIIGVDMLRLPENDNQISRSIHLWGTAFPASIHALSEYQKNFHTRNYV 235

[Close]
BLAST of Csa1G039310 vs. NCBI nr
Match: gi|449439341|ref|XP_004137444.1| (PREDICTED: uncharacterized protein C13E7.11 [Cucumis sativus])

HSP 1 Score: 79.7 bits (195), Expect = 7.5e-12
Identity = 53/128 (41.41%), Postives = 65/128 (50.78%), Query Frame = 1 

Query: 1   MNRLFSLSRILASRLSNSFPTPTLDI----------------------------DHSRSW 60
           MN+LFS  R L SRLSNS+   +LD                             DHSRSW
Sbjct: 1   MNKLFS--RKLVSRLSNSYAN-SLDCKDCASFSTLVRTHNQNHLFGSFVTRPIQDHSRSW 60

Query: 61  SSHPSFAEKIYGFLSVPAAGKRFIFNTSNTLFRKSLE---------------QIRSELKL 86
           SSH SFA+KI+GF SVP  GKRFI N SNT F+ S++               +++ +LK 
Sbjct: 61  SSHRSFAQKIHGFFSVPVVGKRFIVNPSNTYFKGSMKSVVESRSLFTGTPFSKLKFQLKP 120

[Close]
BLAST of Csa1G039310 vs. NCBI nr
Match: gi|449439341|ref|XP_004137444.1| (PREDICTED: uncharacterized protein C13E7.11 [Cucumis sativus])

HSP 1 Score: 41.6 bits (96), Expect = 2.2e+00
Identity = 20/35 (57.14%), Postives = 25/35 (71.43%), Query Frame = 1 

Query: 183 LITGSFIIGVDMLRLPENDNQISRSIHLWGTAFPA 218
           ++ G F+IG DMLR+ END+QIS S HL G A  A
Sbjct: 291 ILLGIFLIGKDMLRMLENDSQISGSAHLGGAAVAA 325


HSP 2 Score: 74.7 bits (182), Expect = 2.4e-10
Identity = 52/128 (40.62%), Postives = 63/128 (49.22%), Query Frame = 1 

Query: 1   MNRLFSLSRILASRLSNS----------------------------FPTPTLDIDHSRSW 60
           MN+LFS  R LASRLSNS                            F T  L  DHSRSW
Sbjct: 1   MNKLFS--RKLASRLSNSYANSIYCKDCASFSTLGRTHNQNHLFGSFVTRPLQ-DHSRSW 60

Query: 61  SSHPSFAEKIYGFLSVPAAGKRFIFNTSNTLFRKSLE---------------QIRSELKL 86
           SSH SF +KI+GF SVP  GKR + N SNT F+ S++               +++ +LK 
Sbjct: 61  SSHRSFVQKIHGFFSVPVVGKRLMVNPSNTHFKGSMKSVVESRSLFTGTPFSKLKFQLKP 120

[Close]
BLAST of Csa1G039310 vs. NCBI nr
Match: gi|659066598|ref|XP_008452017.1| (PREDICTED: uncharacterized protein C13E7.11 [Cucumis melo])

HSP 1 Score: 41.6 bits (96), Expect = 2.2e+00
Identity = 20/35 (57.14%), Postives = 25/35 (71.43%), Query Frame = 1 

Query: 183 LITGSFIIGVDMLRLPENDNQISRSIHLWGTAFPA 218
           ++ G F+IG DMLR+ END+QIS S HL G A  A
Sbjct: 291 ILLGIFLIGKDMLRILENDSQISGSAHLGGAAVAA 325

The following BLAST results are available for this feature:
BLAST of Csa1G039310 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LVM8_CUCSA8.8e-137100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G039310 PE=4 SV=1[more]
A0A0A0LTI7_CUCSA5.2e-1241.41Rhomboid-like protein OS=Cucumis sativus GN=Csa_1G039320 PE=3 SV=1[more]
A0A0A0LTI7_CUCSA1.6e+0057.14Rhomboid-like protein OS=Cucumis sativus GN=Csa_1G039320 PE=3 SV=1[more]
BLAST of Csa1G039310 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208970|gb|KGN64066.1|1.3e-136100.00hypothetical protein Csa_1G039310 [Cucumis sativus][more]
gi|449439341|ref|XP_004137444.1|7.5e-1241.41PREDICTED: uncharacterized protein C13E7.11 [Cucumis sativus][more]
gi|449439341|ref|XP_004137444.1|2.2e+0057.14PREDICTED: uncharacterized protein C13E7.11 [Cucumis sativus][more]
gi|659066598|ref|XP_008452017.1|2.2e+0057.14PREDICTED: uncharacterized protein C13E7.11 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU089582cucumber EST collection version 3.0transcribed_cluster
CU124825cucumber EST collection version 3.0transcribed_cluster
CU157425cucumber EST collection version 3.0transcribed_cluster
CU169378cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G039310.1Csa1G039310.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU089582CU089582transcribed_cluster
CU169378CU169378transcribed_cluster
CU124825CU124825transcribed_cluster
CU157425CU157425transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G039310Cla018552Watermelon (97103) v1cuwmB062
Csa1G039310ClCG04G011680Watermelon (Charleston Gray)cuwcgB057
Csa1G039310Lsi02G001290Bottle gourd (USVL1VR-Ls)culsiB022
Csa1G039310MELO3C035765.2Melon (DHL92) v3.6.1cumedB022
Csa1G039310Cla97C04G078530Watermelon (97103) v2cuwmbB054
Csa1G039310Bhi08G000901Wax gourdcuwgoB050
Csa1G039310CSPI01G06240Wild cucumber (PI 183967)cpicuB000
Csa1G039310CsGy1G005950Cucumber (Gy14) v2cgybcuB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G039310Watermelon (97103) v2cuwmbB059
Csa1G039310Watermelon (97103) v2cuwmbB080
Csa1G039310Wax gourdcuwgoB069
Csa1G039310Wax gourdcuwgoB106
Csa1G039310Cucumber (Chinese Long) v2cucuB000
Csa1G039310Cucumber (Chinese Long) v2cucuB027
Csa1G039310Cucumber (Chinese Long) v2cucuB028
Csa1G039310Cucumber (Chinese Long) v2cucuB037
Csa1G039310Cucumber (Gy14) v1cgycuB137
Csa1G039310Cucumber (Gy14) v1cgycuB300
Csa1G039310Cucumber (Gy14) v1cgycuB403
Csa1G039310Cucurbita maxima (Rimu)cmacuB069
Csa1G039310Cucurbita maxima (Rimu)cmacuB088
Csa1G039310Cucurbita maxima (Rimu)cmacuB217
Csa1G039310Cucurbita maxima (Rimu)cmacuB390
Csa1G039310Cucurbita maxima (Rimu)cmacuB403
Csa1G039310Cucurbita maxima (Rimu)cmacuB430
Csa1G039310Cucurbita maxima (Rimu)cmacuB684
Csa1G039310Cucurbita moschata (Rifu)cmocuB059
Csa1G039310Cucurbita moschata (Rifu)cmocuB077
Csa1G039310Cucurbita moschata (Rifu)cmocuB202
Csa1G039310Cucurbita moschata (Rifu)cmocuB380
Csa1G039310Cucurbita moschata (Rifu)cmocuB391
Csa1G039310Cucurbita moschata (Rifu)cmocuB420
Csa1G039310Cucurbita moschata (Rifu)cmocuB674
Csa1G039310Melon (DHL92) v3.5.1cumeB008
Csa1G039310Melon (DHL92) v3.5.1cumeB027
Csa1G039310Melon (DHL92) v3.5.1cumeB056
Csa1G039310Watermelon (Charleston Gray)cuwcgB061
Csa1G039310Watermelon (Charleston Gray)cuwcgB083
Csa1G039310Watermelon (97103) v1cuwmB038
Csa1G039310Watermelon (97103) v1cuwmB096
Csa1G039310Cucurbita pepo (Zucchini)cpecuB026
Csa1G039310Cucurbita pepo (Zucchini)cpecuB357
Csa1G039310Cucurbita pepo (Zucchini)cpecuB379
Csa1G039310Cucurbita pepo (Zucchini)cpecuB505
Csa1G039310Cucurbita pepo (Zucchini)cpecuB655
Csa1G039310Bottle gourd (USVL1VR-Ls)culsiB053
Csa1G039310Bottle gourd (USVL1VR-Ls)culsiB072
Csa1G039310Bottle gourd (USVL1VR-Ls)culsiB083
Csa1G039310Cucumber (Gy14) v2cgybcuB004
Csa1G039310Cucumber (Gy14) v2cgybcuB157
Csa1G039310Cucumber (Gy14) v2cgybcuB197
Csa1G039310Melon (DHL92) v3.6.1cumedB003
Csa1G039310Melon (DHL92) v3.6.1cumedB048
Csa1G039310Melon (DHL92) v3.6.1cumedB056
Csa1G039310Melon (DHL92) v3.6.1cumedB073
Csa1G039310Silver-seed gourdcarcuB0106
Csa1G039310Silver-seed gourdcarcuB0269
Csa1G039310Silver-seed gourdcarcuB0415
Csa1G039310Silver-seed gourdcarcuB0492
Csa1G039310Silver-seed gourdcarcuB0542
Csa1G039310Silver-seed gourdcarcuB0623