Csa1G032460 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G032460
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 3460566 .. 3461919 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TATATGAGTTCTTTAGCACTCCAGTATGATTCGGATGACGATTCTTTTAAAGCTAACCTCCTTCATATGACTCCGGACCTATTGGACCCAAACTATGAACCTGTACATGAAAGCGAAAGAGAGGTGTGCTATCTAATTTTCTTATCAATTTTTACCATTATTAATTTCAAATCTTCATTCAAATTCCAATTCCTATTTATTTGACATTCATATTGGTTGTTATAATGTTCAGGAGCTTTCTCACATCGGCCCTTCTAGCTTTAGTTTATCTCCATTTTCTTTTTAAGCTTCTGATCTCAATTTTTCTTTTAAGTTTTACTTCTCACCTATGCTACCTTTAGTTTATCTCTACGTGAGAAGAAAACTATTTAAACCCCGTTTCCCCATTGGGGATGGATGAATTCACCCATGGGGACGGGGACGAATTCCACTCCTCCTAGGCTCTGTTGCCAACGCTAATGGATGTACTGATCTATGAAATCTAAAGTGAATTAAACATGAAACTTATGACGATTCTAATATTTGGTTAGGGTTTAAATATTTTCATTTTGCTTTGTGGGAATCTCAATAATCTGCTCATAATCTGCTCCTTGTAATTAAAGTCGTATGGAAATCAAACCCTCAAATTCATAGTTAGATGAGATAAAAAATCAACCATTATAAATAGCCTATTCTTTTATCTCCGTCTTTAATTTTTTGTTGCATTCATTTATAAATGGGGCTTAGGCTTACCAATATGTATGTTTAAGGAGTAGTTTAATTAGGTTAATATGAGTTCTTCGCCACTTCCGTAGGAGAATGATCAGCTTTCTAGCGATGATTCTGACCTCCTTGACATGGATTCGGAACTGTTGGACACATAAAAGGAAAGCGAGGTATGCTATCTAATTTTTTTTCAAATTTAACCATTATTAATTTAAAATCTTCATTCAAATTTCAATTCCAATTCCTATTTATTTGACATTCATTCATAGGGTTTTGATGCACCTTTATTGTATGAGGTGGACTTGATTGGGCACATTGTTCATATGTTTCCTTACAATACACCTGAGGTTCAAGGATTAGCAGAAAAAGCTATTGAACATTATAACAATCAACATGTATGTTCATATAACATTTTGCTTGATTAATTATTTCATATATATATATATATAGTACAAATTATGAGGTTGTGAATATTGTGAAGGCTAATCATCAAGCTGCATGTGGTATCTTGTATTACATAACCTTTGATGTTAAAGAAGCTGGAGCAGCTCCTGAGTTACCAATGACTACCTTCCAAGCTCGAGTTTTGTATGGCATTCGTGTTATAGAGGTTGAACTCTGTCGTCCAGAACCCCCTCCCAAGAATTAA

mRNA sequence

ATGAGTTCTTTAGCACTCCAGTATGATTCGGATGACGATTCTTTTAAAGCTAACCTCCTTCATATGACTCCGGACCTATTGGACCCAAACTATGAACCTGTACATGAAAGCGAAAGAGAGGCTAATCATCAAGCTGCATGTGGTATCTTGTATTACATAACCTTTGATGTTAAAGAAGCTGGAGCAGCTCCTGAGTTACCAATGACTACCTTCCAAGCTCGAGTTTTGTATGGCATTCGTGTTATAGAGGTTGAACTCTGTCGTCCAGAACCCCCTCCCAAGAATTAA

Coding sequence (CDS)

ATGAGTTCTTTAGCACTCCAGTATGATTCGGATGACGATTCTTTTAAAGCTAACCTCCTTCATATGACTCCGGACCTATTGGACCCAAACTATGAACCTGTACATGAAAGCGAAAGAGAGGCTAATCATCAAGCTGCATGTGGTATCTTGTATTACATAACCTTTGATGTTAAAGAAGCTGGAGCAGCTCCTGAGTTACCAATGACTACCTTCCAAGCTCGAGTTTTGTATGGCATTCGTGTTATAGAGGTTGAACTCTGTCGTCCAGAACCCCCTCCCAAGAATTAA

Protein sequence

MSSLALQYDSDDDSFKANLLHMTPDLLDPNYEPVHESEREANHQAACGILYYITFDVKEAGAAPELPMTTFQARVLYGIRVIEVELCRPEPPPKN*
Homology
[Close]
BLAST of Csa1G032460 vs. TrEMBL
Match: A0A0A0LVE8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G032460 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 3.1e-48
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1 

Query: 1  MSSLALQYDSDDDSFKANLLHMTPDLLDPNYEPVHESEREANHQAACGILYYITFDVKEA 60
          MSSLALQYDSDDDSFKANLLHMTPDLLDPNYEPVHESEREANHQAACGILYYITFDVKEA
Sbjct: 1  MSSLALQYDSDDDSFKANLLHMTPDLLDPNYEPVHESEREANHQAACGILYYITFDVKEA 60

Query: 61 GAAPELPMTTFQARVLYGIRVIEVELCRPEPPPKN 96
          GAAPELPMTTFQARVLYGIRVIEVELCRPEPPPKN
Sbjct: 61 GAAPELPMTTFQARVLYGIRVIEVELCRPEPPPKN 95

[Close]
BLAST of Csa1G032460 vs. NCBI nr
Match: gi|700208880|gb|KGN63976.1| (hypothetical protein Csa_1G032460 [Cucumis sativus])

HSP 1 Score: 198.7 bits (504), Expect = 4.5e-48
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1 

Query: 1  MSSLALQYDSDDDSFKANLLHMTPDLLDPNYEPVHESEREANHQAACGILYYITFDVKEA 60
          MSSLALQYDSDDDSFKANLLHMTPDLLDPNYEPVHESEREANHQAACGILYYITFDVKEA
Sbjct: 1  MSSLALQYDSDDDSFKANLLHMTPDLLDPNYEPVHESEREANHQAACGILYYITFDVKEA 60

Query: 61 GAAPELPMTTFQARVLYGIRVIEVELCRPEPPPKN 96
          GAAPELPMTTFQARVLYGIRVIEVELCRPEPPPKN
Sbjct: 61 GAAPELPMTTFQARVLYGIRVIEVELCRPEPPPKN 95

The following BLAST results are available for this feature:
BLAST of Csa1G032460 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LVE8_CUCSA3.1e-48100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G032460 PE=4 SV=1[more]
BLAST of Csa1G032460 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208880|gb|KGN63976.1|4.5e-48100.00hypothetical protein Csa_1G032460 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0004869 cysteine-type endopeptidase inhibitor activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G032460.1Csa1G032460.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G032460CSPI01G05370Wild cucumber (PI 183967)cpicuB000
Csa1G032460CsGy1G005130Cucumber (Gy14) v2cgybcuB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G032460Cucurbita maxima (Rimu)cmacuB206
Csa1G032460Cucurbita maxima (Rimu)cmacuB428
Csa1G032460Cucurbita moschata (Rifu)cmocuB191
Csa1G032460Cucurbita moschata (Rifu)cmocuB417
Csa1G032460Melon (DHL92) v3.5.1cumeB027
Csa1G032460Watermelon (Charleston Gray)cuwcgB057
Csa1G032460Watermelon (97103) v1cuwmB062
Csa1G032460Cucurbita pepo (Zucchini)cpecuB517
Csa1G032460Cucurbita pepo (Zucchini)cpecuB533
Csa1G032460Bottle gourd (USVL1VR-Ls)culsiB022
Csa1G032460Melon (DHL92) v3.6.1cumedB022
Csa1G032460Silver-seed gourdcarcuB0417
Csa1G032460Watermelon (97103) v2cuwmbB054
Csa1G032460Wax gourdcuwgoB034
Csa1G032460Cucumber (Gy14) v1cgycuB137