Csa1G024950 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G024950
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	GPI-anchored protein, putative
Location	Chr1 : 2622563 .. 2624583 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCCCTTCCTTTTTCTCACTTCCCCATCCAGACCCACTTACAATCCGCCCATTTCAAGTGAACCAGTCCCCACCGGCTACTATTCCGGCGTTCCCATAACAATCCGATGTTCAGGGCTGCCCGTTAGACCTCCCCGACGAGCTTTTCCATGGGATTAAGACGGCTTGTGGTCCTTCAAAAGGGGGTGTCTCCGGGCAGCTCCATCGTAGCCGGTGCTGTCCGGTTTTGGCTGCTTGGCTTTACGCTGCTTACTCAGCCACCGCATTGCAGAGGGCCGGTCGAGGTGGGGTTGTTCCCGGTCACACAGCGCCGTCGTATGACCTACCCTTACTGCCCGATGACTCCGAAACTTGCGTCAGTAACTTGGATCAAGCTTTGAATCAAAGGGGTATTGAGTTAATGAAGCCTAACGAGACTTGTGATGTGGTTTATTGTTATTGTGGGATCAGATTGCATCCTTTGAGCTGCCCTGAAGCGTTTTCACTGAACCAGAATGGTATTCTTGAAGGAAATAGAAATGTGAAGAGATTGGAGAGAAATTGCTTGAGTAGTGGCAATGTCAATGGATTTCCAGGCCTTGGTGGCTGTTCTAAATGCTTGAAAAGTCTTTATCAGGTGAACTTTTTTCCCACATCTCTCTCTCTTTCCCTTCTGCGTACCATTGCATTAAATTGTTTTGTTATGTTTTAAGTGTCATTAAAAGATTGGAAATGTTCTACTTTCCTTTCTGTATCTTAGAGTTATCAGAATATTATAGGAAGATGTGCTAATCTGCTGAACTGCTAGAATTAACCATGATGAGAATTTGTTATTGGGGTTGTTTCTAATTGAAGGAATATCTCAAAGGGAAAACAAAACTATATTTGGAAATGGGCCACTTGGTAGTGACTCTAGTGAAGAATCATGACAAGTTCACAAGTCTATATGAATATGACATGTTGTATTCTCTGTTTGGCTGATGAAAACTGCAGATTATATCATACAATAACATGTGAATTCCTTCGGTGTTGATCAGTCATATTTTCAGTTCAAGTTTATTGTTCTCAATAGTGGAAGAAAATAGCACAAGCTTTCATATGTCTGCTGTAGAATCTTGTTGGGAATGGTTTCACGGTCTACTGCAGAGTTTTGTTTCTTTTAATTTGTTGAAGGAACTTGGAAAGTTCAGTGTCCAATCAACCGTATTGGTTTTATACTTTACATTGTTTAGAGTTTAGATCATTGTTGTTTGATTAGATGTGGCTCCAACAAGTTGGAATGCTATAAACTAATGTACCAAACTTATATGATTATGTATTTGGCAATTGAAACATTAACATAATGCAGCTCAACAAGAAGGAAACTTTGAATTCAAGCAAACCAGAGAACAGGACCACCAAGATGCACCACAAGGAGTGTCAACTAATGGGTCTAACATGGCTTCTTGCCAAGAATCGAACAGCGTATATCCGCACCGTAACGTCAGTGCTTCGAGCTAAAATGATGAGCGAAGATGGGTCAGATCCTCGGTCATGTACTCTCAACAGCGACGGGATGCCTTTGGCTGTTGATTCGGCTGAGATGTCTGGCAGTTCTGTTACAATCCCTACTCAGACACTATTGTATCTTGGTCTGTTTTGGGCTGCTTTGATGTACAATCTGATCATGTTGGTTTCTACACTATGAGGTTAGAACAACTTAGAAGTGATTCTGCTTAGAAATTTGTAACTGTGACAATTTTTTTTCTTCTTTTCCTCCCCTTTTTTGTGTAGGTTTCTTGTGCATTGTGATTGTTGTTTGGTATTCATGAGGCTTCAGAAATGATATCTTTTTCTCTGTGTTGATGTGAAAAATGCAAAATTCTTTCCTGATGAGACCTATGGGTAAGCAGCATTTCTGCTTAGGTCCTTGAAATTGGATTTTTTGTGAAAATGGCCAAAGTTTTCCATGTGCAAAGAGGGCCTATTGATTTGTTTTGATAGAGGCCATTGGTGTATAATTTTCTGGCCCTCGTTTGCTATAGATAAGATAAGATAGCATGC

mRNA sequence

ATGAAGCCTAACGAGACTTGTGATGTGGTTTATTGTTATTGTGGGATCAGATTGCATCCTTTGAGCTGCCCTGAAGCGTTTTCACTGAACCAGAATGGTATTCTTGAAGGAAATAGAAATGTGAAGAGATTGGAGAGAAATTGCTTGAGTAGTGGCAATGTCAATGGATTTCCAGGCCTTGGTGGCTGTTCTAAATGCTTGAAAAGTCTTTATCAGCTCAACAAGAAGGAAACTTTGAATTCAAGCAAACCAGAGAACAGGACCACCAAGATGCACCACAAGGAGTGTCAACTAATGGGTCTAACATGGCTTCTTGCCAAGAATCGAACAGCGTATATCCGCACCGTAACGTCAGTGCTTCGAGCTAAAATGATGAGCGAAGATGGGTCAGATCCTCGGTCATGTACTCTCAACAGCGACGGGATGCCTTTGGCTGTTGATTCGGCTGAGATGTCTGGCAGTTCTGTTACAATCCCTACTCAGACACTATTGTATCTTGGTCTGTTTTGGGCTGCTTTGATGTACAATCTGATCATGTTGGTTTCTACACTATGA

Coding sequence (CDS)

ATGAAGCCTAACGAGACTTGTGATGTGGTTTATTGTTATTGTGGGATCAGATTGCATCCTTTGAGCTGCCCTGAAGCGTTTTCACTGAACCAGAATGGTATTCTTGAAGGAAATAGAAATGTGAAGAGATTGGAGAGAAATTGCTTGAGTAGTGGCAATGTCAATGGATTTCCAGGCCTTGGTGGCTGTTCTAAATGCTTGAAAAGTCTTTATCAGCTCAACAAGAAGGAAACTTTGAATTCAAGCAAACCAGAGAACAGGACCACCAAGATGCACCACAAGGAGTGTCAACTAATGGGTCTAACATGGCTTCTTGCCAAGAATCGAACAGCGTATATCCGCACCGTAACGTCAGTGCTTCGAGCTAAAATGATGAGCGAAGATGGGTCAGATCCTCGGTCATGTACTCTCAACAGCGACGGGATGCCTTTGGCTGTTGATTCGGCTGAGATGTCTGGCAGTTCTGTTACAATCCCTACTCAGACACTATTGTATCTTGGTCTGTTTTGGGCTGCTTTGATGTACAATCTGATCATGTTGGTTTCTACACTATGA

Protein sequence

MKPNETCDVVYCYCGIRLHPLSCPEAFSLNQNGILEGNRNVKRLERNCLSSGNVNGFPGLGGCSKCLKSLYQLNKKETLNSSKPENRTTKMHHKECQLMGLTWLLAKNRTAYIRTVTSVLRAKMMSEDGSDPRSCTLNSDGMPLAVDSAEMSGSSVTIPTQTLLYLGLFWAALMYNLIMLVSTL*

Homology

[Close]

BLAST of Csa1G024950 vs. Swiss-Prot
Match: UGPI7_ARATH (Uncharacterized GPI-anchored protein At4g28100 OS=Arabidopsis thaliana GN=At4g28100 PE=1 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.4e-26
Identity = 71/162 (43.83%), Postives = 92/162 (56.79%), Query Frame = 1


Query: 2   KPNETCDVVYCYCGIRLHP---LSCPEAFSLNQNGILEGNRN------VKRLERNCLSSG 61
           +PN +CD + C+CGIRLH    LSCP AF+++      G +N      VK LE+ C +S 
Sbjct: 131 QPNSSCDAILCFCGIRLHQISSLSCPAAFNVSS-----GFKNATPTAAVKNLEKECRNSS 190

Query: 62  NVNGFPGLGGCSKCLKSLYQLNKKETLNSSKPENRTTKMHHKECQLMGLTWLLAKNRTAY 121
                    GC++CL +L +L K    N      R TKM  K+CQLMGLTWLLA+N+TAY
Sbjct: 191 -------YSGCTRCLGALQKL-KVRGGNKKTTTERGTKMMSKDCQLMGLTWLLARNKTAY 250

Query: 122 IRTVTSVLRAKMMSEDGSDPRSCTLNSDGMPLAVDSAEMSGS 155
           I TV++VLRA M S        C+ + + MPLAVDS +   S
Sbjct: 251 IPTVSAVLRAIMYSPHPPHLNKCSPDQENMPLAVDSLQFQKS 279

[Close]

BLAST of Csa1G024950 vs. TrEMBL
Match: A0A0A0LPW7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G024950 PE=4 SV=1)

HSP 1 Score: 379.8 bits (974), Expect = 1.9e-102
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 1


Query: 1   MKPNETCDVVYCYCGIRLHPLSCPEAFSLNQNGILEGNRNVKRLERNCLSSGNVNGFPGL 60
           MKPNETCDVVYCYCGIRLHPLSCPEAFSLNQNGILEGNRNVKRLERNCLSSGNVNGFPGL
Sbjct: 1   MKPNETCDVVYCYCGIRLHPLSCPEAFSLNQNGILEGNRNVKRLERNCLSSGNVNGFPGL 60

Query: 61  GGCSKCLKSLYQLNKKETLNSSKPENRTTKMHHKECQLMGLTWLLAKNRTAYIRTVTSVL 120
           GGCSKCLKSLYQLNKKETLNSSKPENRTTKMHHKECQLMGLTWLLAKNRTAYIRTVTSVL
Sbjct: 61  GGCSKCLKSLYQLNKKETLNSSKPENRTTKMHHKECQLMGLTWLLAKNRTAYIRTVTSVL 120

Query: 121 RAKMMSEDGSDPRSCTLNSDGMPLAVDSAEMSGSSVTIPTQTLLYLGLFWAALMYNLIML 180
           RAKMMSEDGSDPRSCTLNSDGMPLAVDSAEMSGSSVTIPTQTLLYLGLFWAALMYNLIML
Sbjct: 121 RAKMMSEDGSDPRSCTLNSDGMPLAVDSAEMSGSSVTIPTQTLLYLGLFWAALMYNLIML 180

Query: 181 VSTL 185
           VSTL
Sbjct: 181 VSTL 184

[Close]

BLAST of Csa1G024950 vs. TrEMBL
Match: B9IEA3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s04320g PE=4 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 1.6e-69
Identity = 133/184 (72.28%), Postives = 154/184 (83.70%), Query Frame = 1


Query: 2   KPNETCDVVYCYCGIRLHPLSCPEAFSLNQNGILEGNRNVKRLERNCLS-SGNVNGFPGL 61
           KPNETCDVVYCYCGIRLHPLSCPEAFSLNQNG L G++ V++LERNCLS S NVNGFPGL
Sbjct: 150 KPNETCDVVYCYCGIRLHPLSCPEAFSLNQNGKLVGDKRVEKLERNCLSDSNNVNGFPGL 209

Query: 62  GGCSKCLKSLYQLNKKETLNSSKPENRTTKMHHKECQLMGLTWLLAKNRTAYIRTVTSVL 121
           GGCSKCL SLY LN K+ LNSSK E+RTTKMH+K+CQLMGLTWLLAKNRTAYI TVT+VL
Sbjct: 210 GGCSKCLNSLYLLNNKKALNSSKSEDRTTKMHNKDCQLMGLTWLLAKNRTAYIHTVTAVL 269

Query: 122 RAKMMSEDGSDPRSCTLNSDGMPLAVDSAEMSGSSVTIPTQTLLYLGLFWAALMYNLIML 181
           RA MMS DGSDPRSCTL+SDGMPL VDS+E+S +S +I  Q  +Y+ +    L+  L ++
Sbjct: 270 RAMMMSIDGSDPRSCTLSSDGMPLPVDSSEISNNSFSISHQAPIYVTIAVICLLSLLHLV 329

Query: 182 VSTL 185
            S +
Sbjct: 330 PSAI 333

[Close]

BLAST of Csa1G024950 vs. TrEMBL
Match: A9PH01_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 1.6e-69
Identity = 133/184 (72.28%), Postives = 154/184 (83.70%), Query Frame = 1


Query: 2   KPNETCDVVYCYCGIRLHPLSCPEAFSLNQNGILEGNRNVKRLERNCLS-SGNVNGFPGL 61
           KPNETCDVVYCYCGIRLHPLSCPEAFSLNQNG L G++ V++LERNCLS S NVNGFPGL
Sbjct: 150 KPNETCDVVYCYCGIRLHPLSCPEAFSLNQNGKLVGDKRVEKLERNCLSDSNNVNGFPGL 209

Query: 62  GGCSKCLKSLYQLNKKETLNSSKPENRTTKMHHKECQLMGLTWLLAKNRTAYIRTVTSVL 121
           GGCSKCL SLY LN K+ LNSSK E+RTTKMH+K+CQLMGLTWLLAKNRTAYI TVT+VL
Sbjct: 210 GGCSKCLNSLYLLNNKKALNSSKSEDRTTKMHNKDCQLMGLTWLLAKNRTAYIHTVTAVL 269

Query: 122 RAKMMSEDGSDPRSCTLNSDGMPLAVDSAEMSGSSVTIPTQTLLYLGLFWAALMYNLIML 181
           RA MMS DGSDPRSCTL+SDGMPL VDS+E+S +S +I  Q  +Y+ +    L+  L ++
Sbjct: 270 RAMMMSIDGSDPRSCTLSSDGMPLPVDSSEISNNSFSISHQAPIYVTIAVICLLSLLHLV 329

Query: 182 VSTL 185
            S +
Sbjct: 330 PSAI 333

[Close]

BLAST of Csa1G024950 vs. TrEMBL
Match: B9I2G6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s04630g PE=4 SV=2)

HSP 1 Score: 266.5 bits (680), Expect = 2.3e-68
Identity = 128/184 (69.57%), Postives = 155/184 (84.24%), Query Frame = 1


Query: 1   MKPNETCDVVYCYCGIRLHPLSCPEAFSLNQNGILEGNRNVKRLERNCLS-SGNVNGFPG 60
           +KPNETCDVVYCYCGIRLHPLSCPEAFSLN+ G L G++ VK+LERNCLS S NVNGFPG
Sbjct: 149 VKPNETCDVVYCYCGIRLHPLSCPEAFSLNRKGKLVGDKRVKKLERNCLSNSNNVNGFPG 208

Query: 61  LGGCSKCLKSLYQLNKKETLNSSKPENRTTKMHHKECQLMGLTWLLAKNRTAYIRTVTSV 120
           LGGCSKCL SL+ LN K+TLNSSK ++RT +MH K+CQLMGLTWLLAKNRTAYI TVT+V
Sbjct: 209 LGGCSKCLNSLHLLNNKKTLNSSKSDDRTARMHSKDCQLMGLTWLLAKNRTAYIHTVTAV 268

Query: 121 LRAKMMSEDGSDPRSCTLNSDGMPLAVDSAEMSGSSVTIPTQTLLYLGLFWAALMYNLIM 180
           +RA M+S DG DP+SCTLNSDGMPLAVDS+E+S +S++I  Q  +Y  + +  L+  L++
Sbjct: 269 IRAMMLSTDGFDPQSCTLNSDGMPLAVDSSEISNNSLSICHQVPIYAAMAFICLLNLLLI 328

Query: 181 LVST 184
           + ST
Sbjct: 329 VPST 332

[Close]

BLAST of Csa1G024950 vs. TrEMBL
Match: A0A067KY46_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03622 PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 2.6e-67
Identity = 126/169 (74.56%), Postives = 146/169 (86.39%), Query Frame = 1


Query: 1   MKPNETCDVVYCYCGIRLHPLSCPEAFSLNQNGILEGNRNVKRLERNCLSSG-NVNGFPG 60
           +KPNETCDVVYCYCGIRLHPLSCPEAFS+NQ G L G++ VKRLER+CLSS  NVN FPG
Sbjct: 146 VKPNETCDVVYCYCGIRLHPLSCPEAFSMNQKGQLVGDKRVKRLERDCLSSSTNVNQFPG 205

Query: 61  LGGCSKCLKSLYQLNKKETLNSSKPENRTTKMHHKECQLMGLTWLLAKNRTAYIRTVTSV 120
           LGGCSKCL SLY LN K+ LNSSK E+RTTKMH+K+CQLMGLTWLLAKNRTAYI TV++V
Sbjct: 206 LGGCSKCLNSLYLLNNKKALNSSKSEDRTTKMHNKDCQLMGLTWLLAKNRTAYIHTVSAV 265

Query: 121 LRAKMMSEDGSDPRSCTLNSDGMPLAVDSAEMSGSSVTIPTQTLLYLGL 169
           LRA MM+ DGS+PRSCTL+SDGMPLAVDS+E+S  S +I  Q  +Y+ +
Sbjct: 266 LRAMMMNVDGSNPRSCTLSSDGMPLAVDSSEISNDSRSITNQAFIYVSV 314

[Close]

BLAST of Csa1G024950 vs. TAIR10
Match: AT3G18050.1 (AT3G18050.1 unknown protein)

HSP 1 Score: 207.6 bits (527), Expect = 6.6e-54
Identity = 112/186 (60.22%), Postives = 128/186 (68.82%), Query Frame = 1


Query: 2   KPNETCDVVYCYCGIRLHPLSCPEAFSLNQNGILEGNRNVKRLERNCLSS--GNVNGFPG 61
           +PNETCDVVYCYCGIRLHPLSC EAF +N  G L G+  V RLE +CLS    N +GF  
Sbjct: 150 RPNETCDVVYCYCGIRLHPLSCSEAFRVNDEGRLVGDERVDRLETDCLSGSHNNADGFSP 209

Query: 62  LGGCSKCLKSLYQLNKKETLNSSKP----ENRTTKMHHKECQLMGLTWLLAKNRTAYIRT 121
           L GC+KCL SLY+LN K+T  +  P     NRT KMH+K+C LMGLTWLLAKNRTAY  T
Sbjct: 210 LLGCNKCLNSLYKLNPKKTSGTRNPSKEDRNRTAKMHNKDCVLMGLTWLLAKNRTAYFPT 269

Query: 122 VTSVLRAKMMSEDGSDPRSCTLNSDGMPLAVDSAEMSGSSVTIPTQTLLYLGLFWAALMY 181
           VTSVLRA M++ DG  PRSC L SDGMPLAVDS+E S  S T    +L Y       L+Y
Sbjct: 270 VTSVLRAVMLNHDGV-PRSCALGSDGMPLAVDSSEFSNGSPT----SLQYPHHLVHFLLY 329

[Close]

BLAST of Csa1G024950 vs. TAIR10
Match: AT4G28100.1 (AT4G28100.1 unknown protein)

HSP 1 Score: 120.2 bits (300), Expect = 1.4e-27
Identity = 71/162 (43.83%), Postives = 92/162 (56.79%), Query Frame = 1


Query: 2   KPNETCDVVYCYCGIRLHP---LSCPEAFSLNQNGILEGNRN------VKRLERNCLSSG 61
           +PN +CD + C+CGIRLH    LSCP AF+++      G +N      VK LE+ C +S 
Sbjct: 131 QPNSSCDAILCFCGIRLHQISSLSCPAAFNVSS-----GFKNATPTAAVKNLEKECRNSS 190

Query: 62  NVNGFPGLGGCSKCLKSLYQLNKKETLNSSKPENRTTKMHHKECQLMGLTWLLAKNRTAY 121
                    GC++CL +L +L K    N      R TKM  K+CQLMGLTWLLA+N+TAY
Sbjct: 191 -------YSGCTRCLGALQKL-KVRGGNKKTTTERGTKMMSKDCQLMGLTWLLARNKTAY 250

Query: 122 IRTVTSVLRAKMMSEDGSDPRSCTLNSDGMPLAVDSAEMSGS 155
           I TV++VLRA M S        C+ + + MPLAVDS +   S
Sbjct: 251 IPTVSAVLRAIMYSPHPPHLNKCSPDQENMPLAVDSLQFQKS 279

[Close]

BLAST of Csa1G024950 vs. NCBI nr
Match: gi|778656457|ref|XP_011649105.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized GPI-anchored protein At4g28100 [Cucumis sativus])

HSP 1 Score: 379.8 bits (974), Expect = 2.7e-102
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 1


Query: 1   MKPNETCDVVYCYCGIRLHPLSCPEAFSLNQNGILEGNRNVKRLERNCLSSGNVNGFPGL 60
           MKPNETCDVVYCYCGIRLHPLSCPEAFSLNQNGILEGNRNVKRLERNCLSSGNVNGFPGL
Sbjct: 151 MKPNETCDVVYCYCGIRLHPLSCPEAFSLNQNGILEGNRNVKRLERNCLSSGNVNGFPGL 210

Query: 61  GGCSKCLKSLYQLNKKETLNSSKPENRTTKMHHKECQLMGLTWLLAKNRTAYIRTVTSVL 120
           GGCSKCLKSLYQLNKKETLNSSKPENRTTKMHHKECQLMGLTWLLAKNRTAYIRTVTSVL
Sbjct: 211 GGCSKCLKSLYQLNKKETLNSSKPENRTTKMHHKECQLMGLTWLLAKNRTAYIRTVTSVL 270

Query: 121 RAKMMSEDGSDPRSCTLNSDGMPLAVDSAEMSGSSVTIPTQTLLYLGLFWAALMYNLIML 180
           RAKMMSEDGSDPRSCTLNSDGMPLAVDSAEMSGSSVTIPTQTLLYLGLFWAALMYNLIML
Sbjct: 271 RAKMMSEDGSDPRSCTLNSDGMPLAVDSAEMSGSSVTIPTQTLLYLGLFWAALMYNLIML 330

Query: 181 VSTL 185
           VSTL
Sbjct: 331 VSTL 334

[Close]

BLAST of Csa1G024950 vs. NCBI nr
Match: gi|700208767|gb|KGN63863.1| (hypothetical protein Csa_1G024950 [Cucumis sativus])

HSP 1 Score: 379.8 bits (974), Expect = 2.7e-102
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 1


Query: 1   MKPNETCDVVYCYCGIRLHPLSCPEAFSLNQNGILEGNRNVKRLERNCLSSGNVNGFPGL 60
           MKPNETCDVVYCYCGIRLHPLSCPEAFSLNQNGILEGNRNVKRLERNCLSSGNVNGFPGL
Sbjct: 1   MKPNETCDVVYCYCGIRLHPLSCPEAFSLNQNGILEGNRNVKRLERNCLSSGNVNGFPGL 60

Query: 61  GGCSKCLKSLYQLNKKETLNSSKPENRTTKMHHKECQLMGLTWLLAKNRTAYIRTVTSVL 120
           GGCSKCLKSLYQLNKKETLNSSKPENRTTKMHHKECQLMGLTWLLAKNRTAYIRTVTSVL
Sbjct: 61  GGCSKCLKSLYQLNKKETLNSSKPENRTTKMHHKECQLMGLTWLLAKNRTAYIRTVTSVL 120

Query: 121 RAKMMSEDGSDPRSCTLNSDGMPLAVDSAEMSGSSVTIPTQTLLYLGLFWAALMYNLIML 180
           RAKMMSEDGSDPRSCTLNSDGMPLAVDSAEMSGSSVTIPTQTLLYLGLFWAALMYNLIML
Sbjct: 121 RAKMMSEDGSDPRSCTLNSDGMPLAVDSAEMSGSSVTIPTQTLLYLGLFWAALMYNLIML 180

Query: 181 VSTL 185
           VSTL
Sbjct: 181 VSTL 184

[Close]

BLAST of Csa1G024950 vs. NCBI nr
Match: gi|659106915|ref|XP_008453468.1| (PREDICTED: uncharacterized GPI-anchored protein At4g28100 [Cucumis melo])

HSP 1 Score: 363.6 bits (932), Expect = 2.0e-97
Identity = 176/184 (95.65%), Postives = 178/184 (96.74%), Query Frame = 1


Query: 1   MKPNETCDVVYCYCGIRLHPLSCPEAFSLNQNGILEGNRNVKRLERNCLSSGNVNGFPGL 60
           MKPNETCDVVYCYCGIRLHPLSCPEAFSLNQNGILEGNRNVKRLERNCLSSGNVNGFPGL
Sbjct: 151 MKPNETCDVVYCYCGIRLHPLSCPEAFSLNQNGILEGNRNVKRLERNCLSSGNVNGFPGL 210

Query: 61  GGCSKCLKSLYQLNKKETLNSSKPENRTTKMHHKECQLMGLTWLLAKNRTAYIRTVTSVL 120
           GGCSKCLKSLYQLN KETLNSSKPENRTTKMHHKECQLMGLTWLLAKNRTAYIRTVTSVL
Sbjct: 211 GGCSKCLKSLYQLNNKETLNSSKPENRTTKMHHKECQLMGLTWLLAKNRTAYIRTVTSVL 270

Query: 121 RAKMMSEDGSDPRSCTLNSDGMPLAVDSAEMSGSSVTIPTQTLLYLGLFWAALMYNLIML 180
           RAKMM +DGSDPRSCTLNSDGMPLAVDSAE+S SSV IPT TLLYLGL WAALMYNLIML
Sbjct: 271 RAKMMRKDGSDPRSCTLNSDGMPLAVDSAEISSSSVPIPTHTLLYLGLVWAALMYNLIML 330

Query: 181 VSTL 185
           VSTL
Sbjct: 331 VSTL 334

[Close]

BLAST of Csa1G024950 vs. NCBI nr
Match: gi|224135505|ref|XP_002322090.1| (hypothetical protein POPTR_0015s04320g [Populus trichocarpa])

HSP 1 Score: 270.4 bits (690), Expect = 2.3e-69
Identity = 133/184 (72.28%), Postives = 154/184 (83.70%), Query Frame = 1


Query: 2   KPNETCDVVYCYCGIRLHPLSCPEAFSLNQNGILEGNRNVKRLERNCLS-SGNVNGFPGL 61
           KPNETCDVVYCYCGIRLHPLSCPEAFSLNQNG L G++ V++LERNCLS S NVNGFPGL
Sbjct: 150 KPNETCDVVYCYCGIRLHPLSCPEAFSLNQNGKLVGDKRVEKLERNCLSDSNNVNGFPGL 209

Query: 62  GGCSKCLKSLYQLNKKETLNSSKPENRTTKMHHKECQLMGLTWLLAKNRTAYIRTVTSVL 121
           GGCSKCL SLY LN K+ LNSSK E+RTTKMH+K+CQLMGLTWLLAKNRTAYI TVT+VL
Sbjct: 210 GGCSKCLNSLYLLNNKKALNSSKSEDRTTKMHNKDCQLMGLTWLLAKNRTAYIHTVTAVL 269

Query: 122 RAKMMSEDGSDPRSCTLNSDGMPLAVDSAEMSGSSVTIPTQTLLYLGLFWAALMYNLIML 181
           RA MMS DGSDPRSCTL+SDGMPL VDS+E+S +S +I  Q  +Y+ +    L+  L ++
Sbjct: 270 RAMMMSIDGSDPRSCTLSSDGMPLPVDSSEISNNSFSISHQAPIYVTIAVICLLSLLHLV 329

Query: 182 VSTL 185
            S +
Sbjct: 330 PSAI 333

[Close]

BLAST of Csa1G024950 vs. NCBI nr
Match: gi|118487658|gb|ABK95654.1| (unknown [Populus trichocarpa])

HSP 1 Score: 270.4 bits (690), Expect = 2.3e-69
Identity = 133/184 (72.28%), Postives = 154/184 (83.70%), Query Frame = 1


Query: 2   KPNETCDVVYCYCGIRLHPLSCPEAFSLNQNGILEGNRNVKRLERNCLS-SGNVNGFPGL 61
           KPNETCDVVYCYCGIRLHPLSCPEAFSLNQNG L G++ V++LERNCLS S NVNGFPGL
Sbjct: 150 KPNETCDVVYCYCGIRLHPLSCPEAFSLNQNGKLVGDKRVEKLERNCLSDSNNVNGFPGL 209

Query: 62  GGCSKCLKSLYQLNKKETLNSSKPENRTTKMHHKECQLMGLTWLLAKNRTAYIRTVTSVL 121
           GGCSKCL SLY LN K+ LNSSK E+RTTKMH+K+CQLMGLTWLLAKNRTAYI TVT+VL
Sbjct: 210 GGCSKCLNSLYLLNNKKALNSSKSEDRTTKMHNKDCQLMGLTWLLAKNRTAYIHTVTAVL 269

Query: 122 RAKMMSEDGSDPRSCTLNSDGMPLAVDSAEMSGSSVTIPTQTLLYLGLFWAALMYNLIML 181
           RA MMS DGSDPRSCTL+SDGMPL VDS+E+S +S +I  Q  +Y+ +    L+  L ++
Sbjct: 270 RAMMMSIDGSDPRSCTLSSDGMPLPVDSSEISNNSFSISHQAPIYVTIAVICLLSLLHLV 329

Query: 182 VSTL 185
            S +
Sbjct: 330 PSAI 333

The following BLAST results are available for this feature:

BLAST of Csa1G024950 vs. Swiss-Prot


Match Name	E-value	Identity	Description
UGPI7_ARATH	2.4e-26	43.83	Uncharacterized GPI-anchored protein At4g28100 OS=Arabidopsis thaliana GN=At4g28...	[more]

BLAST of Csa1G024950 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPW7_CUCSA	1.9e-102	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G024950 PE=4 SV=1	[more]
B9IEA3_POPTR	1.6e-69	72.28	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s04320g PE=4 SV=1	[more]
A9PH01_POPTR	1.6e-69	72.28	Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1	[more]
B9I2G6_POPTR	2.3e-68	69.57	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s04630g PE=4 SV=2	[more]
A0A067KY46_JATCU	2.6e-67	74.56	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03622 PE=4 SV=1	[more]

BLAST of Csa1G024950 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G18050.1	6.6e-54	60.22	unknown protein	[more]
AT4G28100.1	1.4e-27	43.83	unknown protein	[more]

BLAST of Csa1G024950 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778656457\|ref\|XP_011649105.1\|	2.7e-102	100.00	PREDICTED: LOW QUALITY PROTEIN: uncharacterized GPI-anchored protein At4g28100 [...	[more]
gi\|700208767\|gb\|KGN63863.1\|	2.7e-102	100.00	hypothetical protein Csa_1G024950 [Cucumis sativus]	[more]
gi\|659106915\|ref\|XP_008453468.1\|	2.0e-97	95.65	PREDICTED: uncharacterized GPI-anchored protein At4g28100 [Cucumis melo]	[more]
gi\|224135505\|ref\|XP_002322090.1\|	2.3e-69	72.28	hypothetical protein POPTR_0015s04320g [Populus trichocarpa]	[more]
gi\|118487658\|gb\|ABK95654.1\|	2.3e-69	72.28	unknown [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0009740	gibberellic acid mediated signaling pathway
biological_process	GO:0010162	seed dormancy process
biological_process	GO:0044699	single-organism process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0031225	anchored component of membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU105048	cucumber EST collection version 3.0	transcribed_cluster
CU172942	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G024950.1	Csa1G024950.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU105048	CU105048	transcribed_cluster
CU172942	CU172942	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34056	FAMILY NOT NAMED	coord: 1..181 score: 1.4E
None	No IPR available	PANTHER	PTHR34056:SF1	GENOMIC DNA, CHROMOSOME 3, P1 CLONE: MRC8	coord: 1..181 score: 1.4E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G024950	Cla018935	Watermelon (97103) v1	cuwmB095
Csa1G024950	MELO3C017348	Melon (DHL92) v3.5.1	cumeB055
Csa1G024950	ClCG06G014430	Watermelon (Charleston Gray)	cuwcgB082
Csa1G024950	Lsi06G012970	Bottle gourd (USVL1VR-Ls)	culsiB071
Csa1G024950	MELO3C017348.2	Melon (DHL92) v3.6.1	cumedB047
Csa1G024950	Bhi02G000090	Wax gourd	cuwgoB077
Csa1G024950	CSPI01G04230	Wild cucumber (PI 183967)	cpicuB000
Csa1G024950	Cucsa.111450	Cucumber (Gy14) v1	cgycuB137
Csa1G024950	CmoCh11G003070	Cucurbita moschata (Rifu)	cmocuB076
Csa1G024950	CmoCh10G003480	Cucurbita moschata (Rifu)	cmocuB039
Csa1G024950	Cp4.1LG18g06840	Cucurbita pepo (Zucchini)	cpecuB363
Csa1G024950	Cp4.1LG04g13770	Cucurbita pepo (Zucchini)	cpecuB654
Csa1G024950	CsGy1G004120	Cucumber (Gy14) v2	cgybcuB001
Csa1G024950	Carg09111	Silver-seed gourd	carcuB0622
Csa1G024950	Carg15171	Silver-seed gourd	carcuB0801

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G024950	Wax gourd	cuwgoB040
Csa1G024950	Cucumber (Chinese Long) v2	cucuB000
Csa1G024950	Cucumber (Gy14) v1	cgycuB160
Csa1G024950	Cucumber (Gy14) v1	cgycuB405
Csa1G024950	Cucurbita maxima (Rimu)	cmacuB050
Csa1G024950	Cucurbita maxima (Rimu)	cmacuB087
Csa1G024950	Cucurbita maxima (Rimu)	cmacuB221
Csa1G024950	Cucurbita maxima (Rimu)	cmacuB393
Csa1G024950	Cucurbita moschata (Rifu)	cmocuB207
Csa1G024950	Melon (DHL92) v3.5.1	cumeB033
Csa1G024950	Watermelon (Charleston Gray)	cuwcgB058
Csa1G024950	Watermelon (97103) v1	cuwmB063
Csa1G024950	Cucurbita pepo (Zucchini)	cpecuB031
Csa1G024950	Cucurbita pepo (Zucchini)	cpecuB509
Csa1G024950	Bottle gourd (USVL1VR-Ls)	culsiB025
Csa1G024950	Cucumber (Gy14) v2	cgybcuB196
Csa1G024950	Melon (DHL92) v3.6.1	cumedB028
Csa1G024950	Silver-seed gourd	carcuB0416
Csa1G024950	Watermelon (97103) v2	cuwmbB055
Csa1G024950	Watermelon (97103) v2	cuwmbB079