Csa1G024820 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G024820
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 2551421 .. 2551746 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCACAAGCCCAGCTGTGCATTGCCCGTCCCCTTGGCCTGTAAGGAAGGGTAACAAAATCAAGAAGTTTTGTAGAGAAACTGAAGAATTGGCTTCTGCTGAGCCCTTCTTAAGCAGAGGAGGGTAGCTCATACAACAGCATCTCAAGCAGCTTTTAACTATCTACCTAATTACTCAAACTGGTAAATTTCTATTGCCTAGTCCTTAAATCTATGGAGGGTTAATAACCATTGTGCAAAATTATTGCTGCAGATTCTTGCCACTGCAGTAGCTCGCTGCATTGCTGATTACTTGCTTCAAAGTTCAAATCGCTCTAAACCTTGA

mRNA sequence

ATGGCCACAAGCCCAGCTGTGCATTGCCCGTCCCCTTGGCCTGTAAGGAAGGGTAACAAAATCAAGAAGTTTTGTAGAGAAACTGAAGAATTGGCTTCTGCTGAGCCCTTCTTAAGCAGAGGAGGGGTTAATAACCATTGTGCAAAATTATTGCTGCAGATTCTTGCCACTGCAGTAGCTCGCTGCATTGCTGATTACTTGCTTCAAAGTTCAAATCGCTCTAAACCTTGA

Coding sequence (CDS)

ATGGCCACAAGCCCAGCTGTGCATTGCCCGTCCCCTTGGCCTGTAAGGAAGGGTAACAAAATCAAGAAGTTTTGTAGAGAAACTGAAGAATTGGCTTCTGCTGAGCCCTTCTTAAGCAGAGGAGGGGTTAATAACCATTGTGCAAAATTATTGCTGCAGATTCTTGCCACTGCAGTAGCTCGCTGCATTGCTGATTACTTGCTTCAAAGTTCAAATCGCTCTAAACCTTGA

Protein sequence

MATSPAVHCPSPWPVRKGNKIKKFCRETEELASAEPFLSRGGVNNHCAKLLLQILATAVARCIADYLLQSSNRSKP*
Homology
[Close]
BLAST of Csa1G024820 vs. TrEMBL
Match: A0A0A0LPM9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G024820 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 2.2e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1 

Query: 1  MATSPAVHCPSPWPVRKGNKIKKFCRETEELASAEPFLSRGGVNNHCAKLLLQILATAVA 60
          MATSPAVHCPSPWPVRKGNKIKKFCRETEELASAEPFLSRGGVNNHCAKLLLQILATAVA
Sbjct: 1  MATSPAVHCPSPWPVRKGNKIKKFCRETEELASAEPFLSRGGVNNHCAKLLLQILATAVA 60

Query: 61 RCIADYLLQSSNRSKP 77
          RCIADYLLQSSNRSKP
Sbjct: 61 RCIADYLLQSSNRSKP 76

[Close]
BLAST of Csa1G024820 vs. NCBI nr
Match: gi|700208754|gb|KGN63850.1| (hypothetical protein Csa_1G024820 [Cucumis sativus])

HSP 1 Score: 159.1 bits (401), Expect = 3.2e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1 

Query: 1  MATSPAVHCPSPWPVRKGNKIKKFCRETEELASAEPFLSRGGVNNHCAKLLLQILATAVA 60
          MATSPAVHCPSPWPVRKGNKIKKFCRETEELASAEPFLSRGGVNNHCAKLLLQILATAVA
Sbjct: 1  MATSPAVHCPSPWPVRKGNKIKKFCRETEELASAEPFLSRGGVNNHCAKLLLQILATAVA 60

Query: 61 RCIADYLLQSSNRSKP 77
          RCIADYLLQSSNRSKP
Sbjct: 61 RCIADYLLQSSNRSKP 76

The following BLAST results are available for this feature:
BLAST of Csa1G024820 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LPM9_CUCSA2.2e-36100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G024820 PE=4 SV=1[more]
BLAST of Csa1G024820 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208754|gb|KGN63850.1|3.2e-36100.00hypothetical protein Csa_1G024820 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G024820.1Csa1G024820.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G024820MELO3C017337Melon (DHL92) v3.5.1cumeB055
Csa1G024820MELO3C017337.2Melon (DHL92) v3.6.1cumedB047
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G024820Bottle gourd (USVL1VR-Ls)culsiB025
Csa1G024820Bottle gourd (USVL1VR-Ls)culsiB054
Csa1G024820Bottle gourd (USVL1VR-Ls)culsiB071
Csa1G024820Cucumber (Gy14) v2cgybcuB001
Csa1G024820Cucumber (Gy14) v2cgybcuB196
Csa1G024820Melon (DHL92) v3.6.1cumedB005
Csa1G024820Melon (DHL92) v3.6.1cumedB028
Csa1G024820Silver-seed gourdcarcuB0416
Csa1G024820Silver-seed gourdcarcuB0622
Csa1G024820Silver-seed gourdcarcuB0801
Csa1G024820Watermelon (97103) v2cuwmbB055
Csa1G024820Watermelon (97103) v2cuwmbB061
Csa1G024820Watermelon (97103) v2cuwmbB079
Csa1G024820Wax gourdcuwgoB040
Csa1G024820Wax gourdcuwgoB071
Csa1G024820Wax gourdcuwgoB077
Csa1G024820Cucumber (Chinese Long) v2cucuB000
Csa1G024820Cucumber (Chinese Long) v2cucuB030
Csa1G024820Cucumber (Gy14) v1cgycuB137
Csa1G024820Cucumber (Gy14) v1cgycuB160
Csa1G024820Cucumber (Gy14) v1cgycuB405
Csa1G024820Cucurbita maxima (Rimu)cmacuB050
Csa1G024820Cucurbita maxima (Rimu)cmacuB087
Csa1G024820Cucurbita maxima (Rimu)cmacuB221
Csa1G024820Cucurbita maxima (Rimu)cmacuB393
Csa1G024820Cucurbita maxima (Rimu)cmacuB404
Csa1G024820Cucurbita maxima (Rimu)cmacuB686
Csa1G024820Cucurbita moschata (Rifu)cmocuB076
Csa1G024820Cucurbita moschata (Rifu)cmocuB039
Csa1G024820Cucurbita moschata (Rifu)cmocuB207
Csa1G024820Cucurbita moschata (Rifu)cmocuB389
Csa1G024820Cucurbita moschata (Rifu)cmocuB679
Csa1G024820Melon (DHL92) v3.5.1cumeB010
Csa1G024820Melon (DHL92) v3.5.1cumeB033
Csa1G024820Watermelon (Charleston Gray)cuwcgB058
Csa1G024820Watermelon (Charleston Gray)cuwcgB063
Csa1G024820Watermelon (Charleston Gray)cuwcgB082
Csa1G024820Watermelon (97103) v1cuwmB039
Csa1G024820Watermelon (97103) v1cuwmB063
Csa1G024820Watermelon (97103) v1cuwmB095
Csa1G024820Cucurbita pepo (Zucchini)cpecuB024
Csa1G024820Cucurbita pepo (Zucchini)cpecuB031
Csa1G024820Cucurbita pepo (Zucchini)cpecuB363
Csa1G024820Cucurbita pepo (Zucchini)cpecuB381
Csa1G024820Cucurbita pepo (Zucchini)cpecuB509
Csa1G024820Cucurbita pepo (Zucchini)cpecuB654