Csa1G023030 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G023030
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 2324148 .. 2324846 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCTGGAAAAATAAGTAACATATATTATTGATATATTATAAGATAGTAATTTTTTTCAGTTTACAATTCCCATTAAATACAATATTAGGGGGAAAAAAAAGAAAAAATATTTATATAATTTATTTATGACATCACGGATTTTGTCGCCGGCGTTCAAAATCCGATCACAAGCCGTCGCTCTGTTGTACTGCCAGAGCTATATTCAAATCCAATCGCAACCCATTTTCCTCCACCACTTCCTTCCCCTTCCCACGTCGGCTCACCTCCGCCGGCGACGGAGCCGCCATACTCAGTCCCTTCTTCTCCTCTTCCTCCTCCTCCTTTTTCTCTTGCTGATCTGCCGCAGCAGCAACCACCGCACTCAAACTCTTCGCCAACATCCCTCTCTCCACTCCAAAATACTCCGCCATTTGCTTCATCCGCCGGAGTATCATATAGAACTCCTCGACCTCCTCGTCGGTTGGCTCCTCCGCTGCCGGGGTCGGCGTATCGTCGTTTTTGGTTTTCTTTTCATGAATTTCGGCTCTGTTTTCCATCTGCCTCTTTCGCTTTTCCTTTCCCATTTTTGAAAATTTTCTTGGGTTAAAGTGAAAAATTCAAAGAAAGGAAAAGACGAAGGGAAATTTTGTTTATGGAAGAAAATGGGATTTATTAATGGGAGAATATAAAGAGTAAGGAAAAAAGAAAAAGGGAAACGAT

mRNA sequence

ATGACATCACGGATTTTGTCGCCGGCGTTCAAAATCCGATCACAAGCCGTCGCTCTGTTGTACTGCCAGAGCTATATTCAAATCCAATCGCAACCCATTTTCCTCCACCACTTCCTTCCCCTTCCCACGTCGGCTCACCTCCGCCGGCGACGGAGCCGCCATACTCAGTCCCTTCTTCTCCTCTTCCTCCTCCTCCTTTTTCTCTTGCTGATCTGCCGCAGCAGCAACCACCGCACTCAAACTCTTCGCCAACATCCCTCTCTCCACTCCAAAATACTCCGCCATTTGCTTCATCCGCCGGAGTATCATATAGAACTCCTCGACCTCCTCGTCGGTTGGCTCCTCCGCTGCCGGGGTCGGCGTATCGTCGTTTTTGGTTTTCTTTTCATGAATTTCGGCTCTGTTTTCCATCTGCCTCTTTCGCTTTTCCTTTCCCATTTTTGA

Coding sequence (CDS)

ATGACATCACGGATTTTGTCGCCGGCGTTCAAAATCCGATCACAAGCCGTCGCTCTGTTGTACTGCCAGAGCTATATTCAAATCCAATCGCAACCCATTTTCCTCCACCACTTCCTTCCCCTTCCCACGTCGGCTCACCTCCGCCGGCGACGGAGCCGCCATACTCAGTCCCTTCTTCTCCTCTTCCTCCTCCTCCTTTTTCTCTTGCTGATCTGCCGCAGCAGCAACCACCGCACTCAAACTCTTCGCCAACATCCCTCTCTCCACTCCAAAATACTCCGCCATTTGCTTCATCCGCCGGAGTATCATATAGAACTCCTCGACCTCCTCGTCGGTTGGCTCCTCCGCTGCCGGGGTCGGCGTATCGTCGTTTTTGGTTTTCTTTTCATGAATTTCGGCTCTGTTTTCCATCTGCCTCTTTCGCTTTTCCTTTCCCATTTTTGA

Protein sequence

MTSRILSPAFKIRSQAVALLYCQSYIQIQSQPIFLHHFLPLPTSAHLRRRRSRHTQSLLLLFLLLLFLLLICRSSNHRTQTLRQHPSLHSKILRHLLHPPEYHIELLDLLVGWLLRCRGRRIVVFGFLFMNFGSVFHLPLSLFLSHF*
Homology
[Close]
BLAST of Csa1G023030 vs. TrEMBL
Match: A0A0A0LPJ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G023030 PE=4 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 4.5e-78
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 1 

Query: 1   MTSRILSPAFKIRSQAVALLYCQSYIQIQSQPIFLHHFLPLPTSAHLRRRRSRHTQSLLL 60
           MTSRILSPAFKIRSQAVALLYCQSYIQIQSQPIFLHHFLPLPTSAHLRRRRSRHTQSLLL
Sbjct: 1   MTSRILSPAFKIRSQAVALLYCQSYIQIQSQPIFLHHFLPLPTSAHLRRRRSRHTQSLLL 60

Query: 61  LFLLLLFLLLICRSSNHRTQTLRQHPSLHSKILRHLLHPPEYHIELLDLLVGWLLRCRGR 120
           LFLLLLFLLLICRSSNHRTQTLRQHPSLHSKILRHLLHPPEYHIELLDLLVGWLLRCRGR
Sbjct: 61  LFLLLLFLLLICRSSNHRTQTLRQHPSLHSKILRHLLHPPEYHIELLDLLVGWLLRCRGR 120

Query: 121 RIVVFGFLFMNFGSVFHLPLSLFLSHF 148
           RIVVFGFLFMNFGSVFHLPLSLFLSHF
Sbjct: 121 RIVVFGFLFMNFGSVFHLPLSLFLSHF 147

[Close]
BLAST of Csa1G023030 vs. NCBI nr
Match: gi|700208719|gb|KGN63815.1| (hypothetical protein Csa_1G023030 [Cucumis sativus])

HSP 1 Score: 298.5 bits (763), Expect = 6.4e-78
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 1 

Query: 1   MTSRILSPAFKIRSQAVALLYCQSYIQIQSQPIFLHHFLPLPTSAHLRRRRSRHTQSLLL 60
           MTSRILSPAFKIRSQAVALLYCQSYIQIQSQPIFLHHFLPLPTSAHLRRRRSRHTQSLLL
Sbjct: 1   MTSRILSPAFKIRSQAVALLYCQSYIQIQSQPIFLHHFLPLPTSAHLRRRRSRHTQSLLL 60

Query: 61  LFLLLLFLLLICRSSNHRTQTLRQHPSLHSKILRHLLHPPEYHIELLDLLVGWLLRCRGR 120
           LFLLLLFLLLICRSSNHRTQTLRQHPSLHSKILRHLLHPPEYHIELLDLLVGWLLRCRGR
Sbjct: 61  LFLLLLFLLLICRSSNHRTQTLRQHPSLHSKILRHLLHPPEYHIELLDLLVGWLLRCRGR 120

Query: 121 RIVVFGFLFMNFGSVFHLPLSLFLSHF 148
           RIVVFGFLFMNFGSVFHLPLSLFLSHF
Sbjct: 121 RIVVFGFLFMNFGSVFHLPLSLFLSHF 147

The following BLAST results are available for this feature:
BLAST of Csa1G023030 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LPJ7_CUCSA4.5e-78100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G023030 PE=4 SV=1[more]
BLAST of Csa1G023030 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208719|gb|KGN63815.1|6.4e-78100.00hypothetical protein Csa_1G023030 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU085178cucumber EST collection version 3.0transcribed_cluster
CU093282cucumber EST collection version 3.0transcribed_cluster
CU102880cucumber EST collection version 3.0transcribed_cluster
CU139223cucumber EST collection version 3.0transcribed_cluster
CU149523cucumber EST collection version 3.0transcribed_cluster
CU160732cucumber EST collection version 3.0transcribed_cluster
CU165148cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G023030.1Csa1G023030.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU160732CU160732transcribed_cluster
CU085178CU085178transcribed_cluster
CU139223CU139223transcribed_cluster
CU149523CU149523transcribed_cluster
CU165148CU165148transcribed_cluster
CU093282CU093282transcribed_cluster
CU102880CU102880transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G023030CSPI01G03750Wild cucumber (PI 183967)cpicuB000
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G023030Wax gourdcuwgoB012
Csa1G023030Wax gourdcuwgoB040
Csa1G023030Wax gourdcuwgoB071
Csa1G023030Cucumber (Chinese Long) v2cucuB000
Csa1G023030Cucumber (Chinese Long) v2cucuB030
Csa1G023030Cucumber (Gy14) v1cgycuB299
Csa1G023030Cucumber (Gy14) v1cgycuB405
Csa1G023030Cucurbita maxima (Rimu)cmacuB061
Csa1G023030Cucurbita maxima (Rimu)cmacuB087
Csa1G023030Cucurbita maxima (Rimu)cmacuB221
Csa1G023030Cucurbita maxima (Rimu)cmacuB393
Csa1G023030Cucurbita maxima (Rimu)cmacuB404
Csa1G023030Cucurbita maxima (Rimu)cmacuB686
Csa1G023030Cucurbita moschata (Rifu)cmocuB076
Csa1G023030Cucurbita moschata (Rifu)cmocuB050
Csa1G023030Cucurbita moschata (Rifu)cmocuB207
Csa1G023030Cucurbita moschata (Rifu)cmocuB389
Csa1G023030Cucurbita moschata (Rifu)cmocuB679
Csa1G023030Melon (DHL92) v3.5.1cumeB010
Csa1G023030Melon (DHL92) v3.5.1cumeB033
Csa1G023030Melon (DHL92) v3.5.1cumeB055
Csa1G023030Watermelon (Charleston Gray)cuwcgB058
Csa1G023030Watermelon (Charleston Gray)cuwcgB063
Csa1G023030Watermelon (Charleston Gray)cuwcgB082
Csa1G023030Watermelon (97103) v1cuwmB039
Csa1G023030Watermelon (97103) v1cuwmB063
Csa1G023030Watermelon (97103) v1cuwmB095
Csa1G023030Cucurbita pepo (Zucchini)cpecuB024
Csa1G023030Cucurbita pepo (Zucchini)cpecuB352
Csa1G023030Cucurbita pepo (Zucchini)cpecuB381
Csa1G023030Cucurbita pepo (Zucchini)cpecuB509
Csa1G023030Cucurbita pepo (Zucchini)cpecuB654
Csa1G023030Bottle gourd (USVL1VR-Ls)culsiB025
Csa1G023030Bottle gourd (USVL1VR-Ls)culsiB054
Csa1G023030Bottle gourd (USVL1VR-Ls)culsiB071
Csa1G023030Cucumber (Gy14) v2cgybcuB001
Csa1G023030Cucumber (Gy14) v2cgybcuB005
Csa1G023030Cucumber (Gy14) v2cgybcuB196
Csa1G023030Melon (DHL92) v3.6.1cumedB005
Csa1G023030Melon (DHL92) v3.6.1cumedB028
Csa1G023030Melon (DHL92) v3.6.1cumedB047
Csa1G023030Silver-seed gourdcarcuB0416
Csa1G023030Silver-seed gourdcarcuB0491
Csa1G023030Silver-seed gourdcarcuB0543
Csa1G023030Silver-seed gourdcarcuB0622
Csa1G023030Silver-seed gourdcarcuB0856
Csa1G023030Silver-seed gourdcarcuB1056
Csa1G023030Watermelon (97103) v2cuwmbB055
Csa1G023030Watermelon (97103) v2cuwmbB061
Csa1G023030Watermelon (97103) v2cuwmbB079