CSPI01G03750 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G03750
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 2339310 .. 2340261 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTTAGATCTGGAAAAATAAATAACATATATTATTGATATATTATAAGATAGTAATTTTTTTCAGTTTACAATTCCCATTAAATACAATATTAGGGGGAAAAAAAAGAAAAAATATTTATATAATTTATTTATGACATCACGGATTTTGTCGCCGGCGTTCAAAATCCGATCACAAGCCGTCGCTCTGTTGTACTGCCAGAGCTATATTCAAATCCAATCGCAACCCATTTTCCTCCACCACTTCCTTCCCCTTCCCACGTCGGCTCACCTCCGCCGGCGACGGAGCCGCCATACTCAGTCCCTTCTTCTCCTCTTCCTCCTCCTCCTTTTTCTCTTGCTGATCTGCCGCAGCAGCAACCACCGCACTCAAACTCTTCGCCAACATCCCTCTCTCCACTCCAAAATACTCCGCCATTTGCTTCATCCGCCGGAGTATCATATAGAACTCCTCGACCTCCTCGTCGGTTGGCTCCTCCGCTGCCGGGGTCGGCGTATCGTCGTTTTTGGTTTTCTTTTCATGAATTTCGGCTCTGTTTTCCATCTGCCTCTTTCGCTTTTCCTTTCCCATTTTTGAAATTTTTCTTGGGTTAAAGTGAAAAATTCAAAGAAAGGAAAAGACGAAGGGAAATTTTGTTTACGGAAGAAAATGGGATTTATTAATGGGAGAATATAAAGAGTAAGGAAAAAAGAAAAAGGGAAACGATTCTTTGAAAAAATATTGGAAGCCATAAATAATAGAAGAATGAGACTTGAAGGTTTGGTATACTTAACAAATACAAAAACGTAAAATTAGTCATAAGTGCTTTTTGGTTAATGGAAAAAAAAATTGCTTTGAGACTTATGAATAAAAGAACTTGGCTTCCCCTTCACATTTATTAATTACCAATCCTACATCCATCACAAATAGATTAGCTTCCTACTTAATTCTTTCACGTAGCAGGTTAAACGAAG

mRNA sequence

ATGACATCACGGATTTTGTCGCCGGCGTTCAAAATCCGATCACAAGCCGTCGCTCTGTTGTACTGCCAGAGCTATATTCAAATCCAATCGCAACCCATTTTCCTCCACCACTTCCTTCCCCTTCCCACGTCGGCTCACCTCCGCCGGCGACGGAGCCGCCATACTCAGTCCCTTCTTCTCCTCTTCCTCCTCCTCCTTTTTCTCTTGCTGATCTGCCGCAGCAGCAACCACCGCACTCAAACTCTTCGCCAACATCCCTCTCTCCACTCCAAAATACTCCGCCATTTGCTTCATCCGCCGGAGTATCATATAGAACTCCTCGACCTCCTCGTCGGTTGGCTCCTCCGCTGCCGGGGTCGGCGTATCGTCGTTTTTGGTTTTCTTTTCATGAATTTCGGCTCTGTTTTCCATCTGCCTCTTTCGCTTTTCCTTTCCCATTTTTGA

Coding sequence (CDS)

ATGACATCACGGATTTTGTCGCCGGCGTTCAAAATCCGATCACAAGCCGTCGCTCTGTTGTACTGCCAGAGCTATATTCAAATCCAATCGCAACCCATTTTCCTCCACCACTTCCTTCCCCTTCCCACGTCGGCTCACCTCCGCCGGCGACGGAGCCGCCATACTCAGTCCCTTCTTCTCCTCTTCCTCCTCCTCCTTTTTCTCTTGCTGATCTGCCGCAGCAGCAACCACCGCACTCAAACTCTTCGCCAACATCCCTCTCTCCACTCCAAAATACTCCGCCATTTGCTTCATCCGCCGGAGTATCATATAGAACTCCTCGACCTCCTCGTCGGTTGGCTCCTCCGCTGCCGGGGTCGGCGTATCGTCGTTTTTGGTTTTCTTTTCATGAATTTCGGCTCTGTTTTCCATCTGCCTCTTTCGCTTTTCCTTTCCCATTTTTGA
Homology
[Close]
BLAST of CSPI01G03750 vs. TrEMBL
Match: A0A0A0LPJ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G023030 PE=4 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 3.5e-75
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 1 

Query: 1   MTSRILSPAFKIRSQAVALLYCQSYIQIQSQPIFLHHFLPLPTSAHLRRRRSRHTQSLLL 60
           MTSRILSPAFKIRSQAVALLYCQSYIQIQSQPIFLHHFLPLPTSAHLRRRRSRHTQSLLL
Sbjct: 1   MTSRILSPAFKIRSQAVALLYCQSYIQIQSQPIFLHHFLPLPTSAHLRRRRSRHTQSLLL 60

Query: 61  LFLLLLFLLLICRSSNHRTQTLRQHPSLHSKILRHLLHPPEYHIELLDLLVGWLLRCRGR 120
           LFLLLLFLLLICRSSNHRTQTLRQHPSLHSKILRHLLHPPEYHIELLDLLVGWLLRCRGR
Sbjct: 61  LFLLLLFLLLICRSSNHRTQTLRQHPSLHSKILRHLLHPPEYHIELLDLLVGWLLRCRGR 120

Query: 121 RIVVFGFLFMNFGSVFHLPLSLFLSHF 148
           RIVVFGFLFMNFGSVFHLPLSLFLSHF
Sbjct: 121 RIVVFGFLFMNFGSVFHLPLSLFLSHF 147

[Close]
BLAST of CSPI01G03750 vs. NCBI nr
Match: gi|700208719|gb|KGN63815.1| (hypothetical protein Csa_1G023030 [Cucumis sativus])

HSP 1 Score: 288.9 bits (738), Expect = 5.1e-75
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 1 

Query: 1   MTSRILSPAFKIRSQAVALLYCQSYIQIQSQPIFLHHFLPLPTSAHLRRRRSRHTQSLLL 60
           MTSRILSPAFKIRSQAVALLYCQSYIQIQSQPIFLHHFLPLPTSAHLRRRRSRHTQSLLL
Sbjct: 1   MTSRILSPAFKIRSQAVALLYCQSYIQIQSQPIFLHHFLPLPTSAHLRRRRSRHTQSLLL 60

Query: 61  LFLLLLFLLLICRSSNHRTQTLRQHPSLHSKILRHLLHPPEYHIELLDLLVGWLLRCRGR 120
           LFLLLLFLLLICRSSNHRTQTLRQHPSLHSKILRHLLHPPEYHIELLDLLVGWLLRCRGR
Sbjct: 61  LFLLLLFLLLICRSSNHRTQTLRQHPSLHSKILRHLLHPPEYHIELLDLLVGWLLRCRGR 120

Query: 121 RIVVFGFLFMNFGSVFHLPLSLFLSHF 148
           RIVVFGFLFMNFGSVFHLPLSLFLSHF
Sbjct: 121 RIVVFGFLFMNFGSVFHLPLSLFLSHF 147

The following BLAST results are available for this feature:
BLAST of CSPI01G03750 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G03750 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LPJ7_CUCSA3.5e-75100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G023030 PE=4 SV=1[more]
BLAST of CSPI01G03750 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G03750 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208719|gb|KGN63815.1|5.1e-75100.00hypothetical protein Csa_1G023030 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G03750.1CSPI01G03750.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G03750Csa1G023030Cucumber (Chinese Long) v2cpicuB000
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G03750Silver-seed gourdcarcpiB0419
CSPI01G03750Silver-seed gourdcarcpiB0497
CSPI01G03750Silver-seed gourdcarcpiB0550
CSPI01G03750Silver-seed gourdcarcpiB0628
CSPI01G03750Silver-seed gourdcarcpiB0876
CSPI01G03750Silver-seed gourdcarcpiB1078
CSPI01G03750Cucumber (Chinese Long) v3cpicucB001
CSPI01G03750Cucumber (Chinese Long) v3cpicucB004
CSPI01G03750Cucumber (Chinese Long) v3cpicucB043
CSPI01G03750Watermelon (97103) v2cpiwmbB057
CSPI01G03750Watermelon (97103) v2cpiwmbB064
CSPI01G03750Watermelon (97103) v2cpiwmbB080
CSPI01G03750Wax gourdcpiwgoB039
CSPI01G03750Wax gourdcpiwgoB012
CSPI01G03750Wax gourdcpiwgoB072
CSPI01G03750Wild cucumber (PI 183967)cpicpiB001
CSPI01G03750Wild cucumber (PI 183967)cpicpiB030
CSPI01G03750Cucumber (Gy14) v1cgycpiB310
CSPI01G03750Cucumber (Gy14) v1cgycpiB428
CSPI01G03750Cucurbita maxima (Rimu)cmacpiB062
CSPI01G03750Cucurbita maxima (Rimu)cmacpiB086
CSPI01G03750Cucurbita maxima (Rimu)cmacpiB223
CSPI01G03750Cucurbita maxima (Rimu)cmacpiB397
CSPI01G03750Cucurbita maxima (Rimu)cmacpiB408
CSPI01G03750Cucurbita maxima (Rimu)cmacpiB695
CSPI01G03750Cucurbita moschata (Rifu)cmocpiB053
CSPI01G03750Cucurbita moschata (Rifu)cmocpiB079
CSPI01G03750Cucurbita moschata (Rifu)cmocpiB209
CSPI01G03750Cucurbita moschata (Rifu)cmocpiB394
CSPI01G03750Cucumber (Chinese Long) v2cpicuB006
CSPI01G03750Cucumber (Chinese Long) v2cpicuB038
CSPI01G03750Melon (DHL92) v3.5.1cpimeB006
CSPI01G03750Melon (DHL92) v3.5.1cpimeB029
CSPI01G03750Melon (DHL92) v3.5.1cpimeB056
CSPI01G03750Watermelon (Charleston Gray)cpiwcgB061
CSPI01G03750Watermelon (Charleston Gray)cpiwcgB067
CSPI01G03750Watermelon (Charleston Gray)cpiwcgB084
CSPI01G03750Watermelon (97103) v1cpiwmB040
CSPI01G03750Watermelon (97103) v1cpiwmB068
CSPI01G03750Watermelon (97103) v1cpiwmB100
CSPI01G03750Cucurbita pepo (Zucchini)cpecpiB023
CSPI01G03750Cucurbita pepo (Zucchini)cpecpiB353
CSPI01G03750Cucurbita pepo (Zucchini)cpecpiB381
CSPI01G03750Cucurbita pepo (Zucchini)cpecpiB509
CSPI01G03750Cucurbita pepo (Zucchini)cpecpiB657
CSPI01G03750Bottle gourd (USVL1VR-Ls)cpilsiB025
CSPI01G03750Bottle gourd (USVL1VR-Ls)cpilsiB054
CSPI01G03750Bottle gourd (USVL1VR-Ls)cpilsiB071
CSPI01G03750Melon (DHL92) v3.6.1cpimedB006
CSPI01G03750Melon (DHL92) v3.6.1cpimedB029
CSPI01G03750Melon (DHL92) v3.6.1cpimedB050
CSPI01G03750Cucumber (Gy14) v2cgybcpiB001
CSPI01G03750Cucumber (Gy14) v2cgybcpiB005
CSPI01G03750Cucumber (Gy14) v2cgybcpiB201