Csa1G004110 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G004110
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 645459 .. 645836 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAAGAACAGATTTTTCTGAGAATAATTCAGCATCTGGGTTGACTTCATTTTTGATGAATGAAGTGAAAGAAAGCTCAAGTAATAGTTCAGTAGTGAGTAATTATTCAGGGTATCATATGAACAATCCAGGTGAAAACAACAACAACAACAATGGAGGTGGATCTTCATGGGAATCGTCTGAGAACAAGCTCGAAAATTTGTTAGAGTTTCAAACAAATCAAATGAAGAACTTGGAATTCAAAGGAAGTTCTTCTGTTGAAGAAACAAAGATCATTCAAAATCAAATAAATTCAGCAACTTTTGGAAGCTATCCTTTAATGTCAATGTCAGAAAATGAAAGAGCAGGAAGTTTTGGAATCTTTCATCACATATGA

mRNA sequence

ATGTCAAGAACAGATTTTTCTGAGAATAATTCAGCATCTGGGTTGACTTCATTTTTGATGAATGAAGTGAAAGAAAGCTCAAGTAATAGTTCAGTAGTGAGTAATTATTCAGGGTATCATATGAACAATCCAGGTGAAAACAACAACAACAACAATGGAGGTGGATCTTCATGGGAATCGTCTGAGAACAAGCTCGAAAATTTGTTAGAGTTTCAAACAAATCAAATGAAGAACTTGGAATTCAAAGGAAGTTCTTCTGTTGAAGAAACAAAGATCATTCAAAATCAAATAAATTCAGCAACTTTTGGAAGCTATCCTTTAATGTCAATGTCAGAAAATGAAAGAGCAGGAAGTTTTGGAATCTTTCATCACATATGA

Coding sequence (CDS)

ATGTCAAGAACAGATTTTTCTGAGAATAATTCAGCATCTGGGTTGACTTCATTTTTGATGAATGAAGTGAAAGAAAGCTCAAGTAATAGTTCAGTAGTGAGTAATTATTCAGGGTATCATATGAACAATCCAGGTGAAAACAACAACAACAACAATGGAGGTGGATCTTCATGGGAATCGTCTGAGAACAAGCTCGAAAATTTGTTAGAGTTTCAAACAAATCAAATGAAGAACTTGGAATTCAAAGGAAGTTCTTCTGTTGAAGAAACAAAGATCATTCAAAATCAAATAAATTCAGCAACTTTTGGAAGCTATCCTTTAATGTCAATGTCAGAAAATGAAAGAGCAGGAAGTTTTGGAATCTTTCATCACATATGA

Protein sequence

MSRTDFSENNSASGLTSFLMNEVKESSSNSSVVSNYSGYHMNNPGENNNNNNGGGSSWESSENKLENLLEFQTNQMKNLEFKGSSSVEETKIIQNQINSATFGSYPLMSMSENERAGSFGIFHHI*

Homology

[Close]

BLAST of Csa1G004110 vs. TrEMBL
Match: A0A0A0LNU6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G004110 PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 1.8e-64
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1


Query: 1   MSRTDFSENNSASGLTSFLMNEVKESSSNSSVVSNYSGYHMNNPGENNNNNNGGGSSWES 60
           MSRTDFSENNSASGLTSFLMNEVKESSSNSSVVSNYSGYHMNNPGENNNNNNGGGSSWES
Sbjct: 1   MSRTDFSENNSASGLTSFLMNEVKESSSNSSVVSNYSGYHMNNPGENNNNNNGGGSSWES 60

Query: 61  SENKLENLLEFQTNQMKNLEFKGSSSVEETKIIQNQINSATFGSYPLMSMSENERAGSFG 120
           SENKLENLLEFQTNQMKNLEFKGSSSVEETKIIQNQINSATFGSYPLMSMSENERAGSFG
Sbjct: 61  SENKLENLLEFQTNQMKNLEFKGSSSVEETKIIQNQINSATFGSYPLMSMSENERAGSFG 120

Query: 121 IFHHI 126
           IFHHI
Sbjct: 121 IFHHI 125

[Close]

BLAST of Csa1G004110 vs. TrEMBL
Match: M5WFB8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018561mg PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 2.5e-21
Identity = 63/129 (48.84%), Postives = 86/129 (66.67%), Query Frame = 1


Query: 1   MSRTDFSENNSASGLTSFLMNEVKESSSNSSVVSNY-SGYHMNNPGENNNNNN---GGGS 60
           MS TDFS+N SAS L+SF MNEVKE SSNSS VS+Y +G+HMNN   NNNNNN       
Sbjct: 258 MSGTDFSDN-SASRLSSFFMNEVKECSSNSSNVSSYAAGFHMNNNSNNNNNNNVVENAAF 317

Query: 61  SWESSENKLENLLEFQTNQMKNLEFKGSSSVEETKIIQNQINSATFGSYPLMSMSENERA 120
           SW+ ++NKL++L +F  N +K+ E    +S ++ + + +  NS  F SYPL S+SE+   
Sbjct: 318 SWD-TDNKLDSLFQFHANGIKSEELIKPNSWQQGQQLLHAQNSVDFNSYPLTSLSEDLTG 377

Query: 121 GSFGIFHHI 126
            +F +F HI
Sbjct: 378 ANFDVFQHI 384

[Close]

BLAST of Csa1G004110 vs. TrEMBL
Match: A0A061FTT7_THECC (Myb domain protein 86 OS=Theobroma cacao GN=TCM_012174 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.2e-18
Identity = 58/125 (46.40%), Postives = 79/125 (63.20%), Query Frame = 1


Query: 1   MSRTDFSENNSASGLTSFLMNEVKESSSNSSVVSNYSGYHMNNPGENNNNNNGGGSSWES 60
           MS TDFS+N+++   TSFL+NE KESSSNSS +S+Y+G+ MNN  EN      G  SW+ 
Sbjct: 255 MSGTDFSDNSASRISTSFLLNEAKESSSNSSNISSYTGFQMNNMVEN------GAFSWD- 314

Query: 61  SENKLENLLEFQTNQMKNLEFKGSSSVEETKIIQNQINSATFGSYPLMSMSENERAGSFG 120
           +ENKL+ + +FQ N +K+ E K  S  E    + N  NS  F SYPL S+SE+    +F 
Sbjct: 315 TENKLDTMFQFQVNGIKSEELKPGSWQEGQGQLHNH-NSVDFSSYPLTSLSEDLTGANFD 371

Query: 121 IFHHI 126
           +F  I
Sbjct: 375 VFQQI 371

[Close]

BLAST of Csa1G004110 vs. TrEMBL
Match: B9IEX5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s09430g PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.5e-18
Identity = 60/126 (47.62%), Postives = 81/126 (64.29%), Query Frame = 1


Query: 1   MSRTDFSENNSASGLTSFLMNEVKESSSNSSVVSNYSGYHMNNPGENNNNNNGGGSSWES 60
           MS TDFS+N SAS ++S  +NE KESSSNSS +SNY+GY MNN  E    N    SSW+S
Sbjct: 252 MSGTDFSDN-SASRMSSMFLNEAKESSSNSSNISNYAGYQMNNMVE----NAAAFSSWDS 311

Query: 61  SENKLENLLEF-QTNQMKNLEFKGSSSVEETKIIQNQINSATFGSYPLMSMSENERAGSF 120
            ++KLE++ ++ Q N +K  E K S   E  ++  +Q NS  F SYPL S+SE+    +F
Sbjct: 312 DDHKLESVFQYHQVNGVKTEELKPSPWHEAGRLHTHQ-NSVDFNSYPLTSLSEDITGANF 371

Query: 121 GIFHHI 126
            +FH I
Sbjct: 372 DVFHQI 371

[Close]

BLAST of Csa1G004110 vs. TrEMBL
Match: A0A0E4B7V9_9ROSI (MYB transcriptional factor OS=Populus tremula x Populus tremuloides GN=PtxtMYB148 PE=2 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.6e-15
Identity = 59/126 (46.83%), Postives = 80/126 (63.49%), Query Frame = 1


Query: 1   MSRTDFSENNSASGLTSFLMNEVKESSSNSSVVSNYSGYHMNNPGENNNNNNGGGSSWES 60
           MS TDFS+N SAS ++S  +NE KESSSNSS + NY+GY MNN  E    N  G SSW+ 
Sbjct: 253 MSGTDFSDN-SASRMSSMFLNEAKESSSNSSNIRNYAGYRMNNMVE----NAAGFSSWD- 312

Query: 61  SENKLENLLEF-QTNQMKNLEFKGSSSVEETKIIQNQINSATFGSYPLMSMSENERAGSF 120
           S++KLE++ ++ Q N +K  E K S   E  ++  +Q NS  F S PL S+SE+ +  +F
Sbjct: 313 SDDKLESVFQYHQVNGIKTGELKPSPWHEAGQLHAHQ-NSVDFSSCPLTSLSEDLKGANF 371

Query: 121 GIFHHI 126
             FH I
Sbjct: 373 DGFHQI 371

[Close]

BLAST of Csa1G004110 vs. NCBI nr
Match: gi|449440991|ref|XP_004138267.1| (PREDICTED: transcription factor MYB32-like [Cucumis sativus])

HSP 1 Score: 253.1 bits (645), Expect = 2.6e-64
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1


Query: 1   MSRTDFSENNSASGLTSFLMNEVKESSSNSSVVSNYSGYHMNNPGENNNNNNGGGSSWES 60
           MSRTDFSENNSASGLTSFLMNEVKESSSNSSVVSNYSGYHMNNPGENNNNNNGGGSSWES
Sbjct: 236 MSRTDFSENNSASGLTSFLMNEVKESSSNSSVVSNYSGYHMNNPGENNNNNNGGGSSWES 295

Query: 61  SENKLENLLEFQTNQMKNLEFKGSSSVEETKIIQNQINSATFGSYPLMSMSENERAGSFG 120
           SENKLENLLEFQTNQMKNLEFKGSSSVEETKIIQNQINSATFGSYPLMSMSENERAGSFG
Sbjct: 296 SENKLENLLEFQTNQMKNLEFKGSSSVEETKIIQNQINSATFGSYPLMSMSENERAGSFG 355

Query: 121 IFHHI 126
           IFHHI
Sbjct: 356 IFHHI 360

[Close]

BLAST of Csa1G004110 vs. NCBI nr
Match: gi|700208449|gb|KGN63545.1| (hypothetical protein Csa_1G004110 [Cucumis sativus])

HSP 1 Score: 253.1 bits (645), Expect = 2.6e-64
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1


Query: 1   MSRTDFSENNSASGLTSFLMNEVKESSSNSSVVSNYSGYHMNNPGENNNNNNGGGSSWES 60
           MSRTDFSENNSASGLTSFLMNEVKESSSNSSVVSNYSGYHMNNPGENNNNNNGGGSSWES
Sbjct: 1   MSRTDFSENNSASGLTSFLMNEVKESSSNSSVVSNYSGYHMNNPGENNNNNNGGGSSWES 60

Query: 61  SENKLENLLEFQTNQMKNLEFKGSSSVEETKIIQNQINSATFGSYPLMSMSENERAGSFG 120
           SENKLENLLEFQTNQMKNLEFKGSSSVEETKIIQNQINSATFGSYPLMSMSENERAGSFG
Sbjct: 61  SENKLENLLEFQTNQMKNLEFKGSSSVEETKIIQNQINSATFGSYPLMSMSENERAGSFG 120

Query: 121 IFHHI 126
           IFHHI
Sbjct: 121 IFHHI 125

[Close]

BLAST of Csa1G004110 vs. NCBI nr
Match: gi|659129085|ref|XP_008464521.1| (PREDICTED: transcription factor MYB32-like isoform X1 [Cucumis melo])

HSP 1 Score: 215.7 bits (548), Expect = 4.6e-53
Identity = 120/130 (92.31%), Postives = 121/130 (93.08%), Query Frame = 1


Query: 1   MSRTDFSENNSASGLTSFLMNEVKESSSN-SSVVSNYSGYHMNN-PGENNNN--NNGGGS 60
           MSRTDFSEN SASGLTSF MNEVKESSSN SSVVSNYSGYHMNN PGENNNN  NNGGG 
Sbjct: 237 MSRTDFSEN-SASGLTSFFMNEVKESSSNNSSVVSNYSGYHMNNNPGENNNNSNNNGGGF 296

Query: 61  SWESSENKLENLLEFQTNQMKNLEFKGSSSVEETKIIQNQINSATFGSY-PLMSMSENER 120
           SWES ENKLENLLEFQTNQMKNLEFKGSSSVEE+KIIQNQINSATFGSY PLMSMSENER
Sbjct: 297 SWES-ENKLENLLEFQTNQMKNLEFKGSSSVEESKIIQNQINSATFGSYHPLMSMSENER 356

Query: 121 AGSFGIFHHI 126
           AGSFGIFHHI
Sbjct: 357 AGSFGIFHHI 364

[Close]

BLAST of Csa1G004110 vs. NCBI nr
Match: gi|659115496|ref|XP_008457588.1| (PREDICTED: probable ATP-dependent RNA helicase ddx42 [Cucumis melo])

HSP 1 Score: 208.0 bits (528), Expect = 9.7e-51
Identity = 116/128 (90.62%), Postives = 118/128 (92.19%), Query Frame = 1


Query: 1   MSRTDFSENNSASGLTSFLMNEVKESSSN-SSVVSNYSGYHMN-NPGENNNNNNG-GGSS 60
           +SRTDFSEN SASGLTSF MNEVKESSSN SSVVSNYSGYHMN NPGENNNNNN  GG S
Sbjct: 119 VSRTDFSEN-SASGLTSFFMNEVKESSSNNSSVVSNYSGYHMNNNPGENNNNNNNEGGFS 178

Query: 61  WESSENKLENLLEFQTNQMKNLEFKGSSSVEETKIIQNQINSATFGSY-PLMSMSENERA 120
           WE SENKLENLLEFQTNQMKNLEFKGSSSVEE+KIIQNQINSATFGSY PLMSMSENERA
Sbjct: 179 WE-SENKLENLLEFQTNQMKNLEFKGSSSVEESKIIQNQINSATFGSYHPLMSMSENERA 238

Query: 121 GSFGIFHH 125
           GSFGI HH
Sbjct: 239 GSFGIVHH 244

[Close]

BLAST of Csa1G004110 vs. NCBI nr
Match: gi|659129087|ref|XP_008464522.1| (PREDICTED: myb-related protein 308-like isoform X2 [Cucumis melo])

HSP 1 Score: 150.6 bits (379), Expect = 1.8e-33
Identity = 82/111 (73.87%), Postives = 90/111 (81.08%), Query Frame = 1


Query: 20  MNEVKESSS----NSSVVSNYSGYHMNNPGENNNNNNGGGSSWESSENKLENLLEFQTNQ 79
           ++++ E SS    N     + S Y +N    NN+NNNGGG SWES ENKLENLLEFQTNQ
Sbjct: 167 ISKINEESSQHFVNKIEFDSLSSY-LNGENNNNSNNNGGGFSWES-ENKLENLLEFQTNQ 226

Query: 80  MKNLEFKGSSSVEETKIIQNQINSATFGSY-PLMSMSENERAGSFGIFHHI 126
           MKNLEFKGSSSVEE+KIIQNQINSATFGSY PLMSMSENERAGSFGIFHHI
Sbjct: 227 MKNLEFKGSSSVEESKIIQNQINSATFGSYHPLMSMSENERAGSFGIFHHI 275

The following BLAST results are available for this feature:

BLAST of Csa1G004110 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LNU6_CUCSA	1.8e-64	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G004110 PE=4 SV=1	[more]
M5WFB8_PRUPE	2.5e-21	48.84	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018561mg PE=4 SV=1	[more]
A0A061FTT7_THECC	1.2e-18	46.40	Myb domain protein 86 OS=Theobroma cacao GN=TCM_012174 PE=4 SV=1	[more]
B9IEX5_POPTR	1.5e-18	47.62	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s09430g PE=4 SV=1	[more]
A0A0E4B7V9_9ROSI	1.6e-15	46.83	MYB transcriptional factor OS=Populus tremula x Populus tremuloides GN=PtxtMYB14...	[more]

BLAST of Csa1G004110 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449440991\|ref\|XP_004138267.1\|	2.6e-64	100.00	PREDICTED: transcription factor MYB32-like [Cucumis sativus]	[more]
gi\|700208449\|gb\|KGN63545.1\|	2.6e-64	100.00	hypothetical protein Csa_1G004110 [Cucumis sativus]	[more]
gi\|659129085\|ref\|XP_008464521.1\|	4.6e-53	92.31	PREDICTED: transcription factor MYB32-like isoform X1 [Cucumis melo]	[more]
gi\|659115496\|ref\|XP_008457588.1\|	9.7e-51	90.63	PREDICTED: probable ATP-dependent RNA helicase ddx42 [Cucumis melo]	[more]
gi\|659129087\|ref\|XP_008464522.1\|	1.8e-33	73.87	PREDICTED: myb-related protein 308-like isoform X2 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G004110.1	Csa1G004110.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 62..82 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G004110	Cla019223	Watermelon (97103) v1	cuwmB094
Csa1G004110	MELO3C026265	Melon (DHL92) v3.5.1	cumeB054
Csa1G004110	ClCG06G017300	Watermelon (Charleston Gray)	cuwcgB081
Csa1G004110	Lsi06G015850	Bottle gourd (USVL1VR-Ls)	culsiB070
Csa1G004110	Cla97C06G126990	Watermelon (97103) v2	cuwmbB078
Csa1G004110	Bhi02G000382	Wax gourd	cuwgoB095
Csa1G004110	CSPI01G01080	Wild cucumber (PI 183967)	cpicuB000
Csa1G004110	Cucsa.196550	Cucumber (Gy14) v1	cgycuB299
Csa1G004110	CmaCh11G000740	Cucurbita maxima (Rimu)	cmacuB086
Csa1G004110	CmaCh10G001010	Cucurbita maxima (Rimu)	cmacuB048
Csa1G004110	CmoCh10G001040	Cucurbita moschata (Rifu)	cmocuB037
Csa1G004110	CmoCh11G000750	Cucurbita moschata (Rifu)	cmocuB076
Csa1G004110	Cp4.1LG18g08610	Cucurbita pepo (Zucchini)	cpecuB361
Csa1G004110	Cp4.1LG04g15740	Cucurbita pepo (Zucchini)	cpecuB653
Csa1G004110	Carg10321	Silver-seed gourd	carcuB0391
Csa1G004110	Carg20204	Silver-seed gourd	carcuB1062

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G004110	Watermelon (97103) v2	cuwmbB090
Csa1G004110	Wax gourd	cuwgoB007
Csa1G004110	Wax gourd	cuwgoB059
Csa1G004110	Cucumber (Gy14) v1	cgycuB107
Csa1G004110	Cucumber (Gy14) v1	cgycuB475
Csa1G004110	Cucurbita maxima (Rimu)	cmacuB113
Csa1G004110	Cucurbita moschata (Rifu)	cmocuB085
Csa1G004110	Cucurbita moschata (Rifu)	cmocuB223
Csa1G004110	Cucurbita moschata (Rifu)	cmocuB390
Csa1G004110	Melon (DHL92) v3.5.1	cumeB019
Csa1G004110	Watermelon (Charleston Gray)	cuwcgB002
Csa1G004110	Watermelon (Charleston Gray)	cuwcgB005
Csa1G004110	Watermelon (97103) v1	cuwmB005
Csa1G004110	Watermelon (97103) v1	cuwmB002
Csa1G004110	Bottle gourd (USVL1VR-Ls)	culsiB035
Csa1G004110	Bottle gourd (USVL1VR-Ls)	culsiB045
Csa1G004110	Cucumber (Gy14) v2	cgybcuB001
Csa1G004110	Cucumber (Gy14) v2	cgybcuB011
Csa1G004110	Cucumber (Gy14) v2	cgybcuB098
Csa1G004110	Melon (DHL92) v3.6.1	cumedB014
Csa1G004110	Melon (DHL92) v3.6.1	cumedB046