Carg10321 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg10321
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Transcription factor myb86
Location	Cucurbita_argyrosperma_scaffold_047 : 403915 .. 404575 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAGCCATTGGAGGACAATATGGAAGCCATGAAAGACCAGAAGCCAAGAGGGGAAGTGCCTCATCTTCTTCAAGGGAATATTTCCAATATCACCATTTCTTCAGAAGCTTCAATTCTTAATGATTCAAATCAATACTACAAGCAAACAGAGGATTCATCACAGCATTTTGTCAACAAGATTGAATTTGACTCTCTCAGCTCCTACTTGGGCGGTGAGTATAATAACAATTCACAATTTGCAGCAGCTGAATACCAGTACAATAACACTTTCTATTCAAATTCAAGTATGGGGATGCCAAGCTACACAAGTTCTGAACATGGGAACATGTCAAGAACAGATTTTTCAGAAAATTCAGGATCTGGGTTCAGCTGTTTCTTCATGAATGAGGTGAAAGAAAGCTCAAGCAACAGCTCGGTGATGAGCAATTATTCAGGGTACCAAAACAGTGGAGGTTTTTCATGGGAATCGGAGAACAAGCTTGAAAAATTGTTACAGTTTGAGACAAACCAAATGAAAAACATGGGATTGAAGGGAAGTTCAGAGGAAGAAACAAAGAACATTGAAACTCAAATGAACTCAGCAAGTTTTGGAAGCTACCCGTTAATGTCAATGTCAGAAAATGAAAGAGGAGGAAGTTTTGGCGTCTTCCATAACATATGA

mRNA sequence

CAAGCCATTGGAGGACAATATGGAAGCCATGAAAGACCAGAAGCCAAGAGGGGAAGTGCCTCATCTTCTTCAAGGGAATATTTCCAATATCACCATTTCTTCAGAAGCTTCAATTCTTAATGATTCAAATCAATACTACAAGCAAACAGAGGATTCATCACAGCATTTTGTCAACAAGATTGAATTTGACTCTCTCAGCTCCTACTTGGGCGGATCTGGGTTCAGCTGTTTCTTCATGAATGAGGTGAAAGAAAGCTCAAGCAACAGCTCGGTGATGAGCAATTATTCAGGGTACCAAAACAGTGGAGGTTTTTCATGGGAATCGGAGAACAAGCTTGAAAAATTGTTACAGTTTGAGACAAACCAAATGAAAAACATGGGATTGAAGGGAAGTTCAGAGGAAGAAACAAAGAACATTGAAACTCAAATGAACTCAGCAAGTTTTGGAAGCTACCCGTTAATGTCAATGTCAGAAAATGAAAGAGGAGGAAGTTTTGGCGTCTTCCATAACATATGA

Coding sequence (CDS)

ATGGAAGCCATGAAAGACCAGAAGCCAAGAGGGGAAGTGCCTCATCTTCTTCAAGGGAATATTTCCAATATCACCATTTCTTCAGAAGCTTCAATTCTTAATGATTCAAATCAATACTACAAGCAAACAGAGGATTCATCACAGCATTTTGTCAACAAGATTGAATTTGACTCTCTCAGCTCCTACTTGGGCGGATCTGGGTTCAGCTGTTTCTTCATGAATGAGGTGAAAGAAAGCTCAAGCAACAGCTCGGTGATGAGCAATTATTCAGGGTACCAAAACAGTGGAGGTTTTTCATGGGAATCGGAGAACAAGCTTGAAAAATTGTTACAGTTTGAGACAAACCAAATGAAAAACATGGGATTGAAGGGAAGTTCAGAGGAAGAAACAAAGAACATTGAAACTCAAATGAACTCAGCAAGTTTTGGAAGCTACCCGTTAATGTCAATGTCAGAAAATGAAAGAGGAGGAAGTTTTGGCGTCTTCCATAACATATGA

Protein sequence

MEAMKDQKPRGEVPHLLQGNISNITISSEASILNDSNQYYKQTEDSSQHFVNKIEFDSLSSYLGGSGFSCFFMNEVKESSSNSSVMSNYSGYQNSGGFSWESENKLEKLLQFETNQMKNMGLKGSSEEETKNIETQMNSASFGSYPLMSMSENERGGSFGVFHNI

Homology

[Close]

BLAST of Carg10321 vs. NCBI nr
Match: XP_022988639.1 (transcription factor MYB86-like [Cucurbita maxima])

HSP 1 Score: 290.0 bits (741), Expect = 4.9e-75
Identity = 160/213 (75.12%), Postives = 163/213 (76.53%), Query Frame = 0


Query: 1   MEAMKDQKPRGEVPHLLQGNISNITISSEASILNDSNQYYKQTEDSSQHFVNKIEFDSLS 60
           MEAMKDQKPRGEVPHLLQGN+SNITISSEAS+LNDSNQYYKQTEDSSQHFVNKIEFDSLS
Sbjct: 133 MEAMKDQKPRGEVPHLLQGNVSNITISSEASVLNDSNQYYKQTEDSSQHFVNKIEFDSLS 192

Query: 61  SYLG------------------------------------------------GSGFSCFF 120
           SYLG                                                GSGFSCFF
Sbjct: 193 SYLGGEYNNNSQFAAAQYQYSNIFYSNSSMGMPSYTSSEHGNMSRTDFSENSGSGFSCFF 252

Query: 121 MNEVKESSSNSSVMSNYSGYQNSGGFSWESENKLEKLLQFETNQMKNMGLKGSSEEETKN 166
           MNEVKESSSNSSVMSNYSGYQNSGGFSWESE KLEKLLQFETNQMKNMGLKGSSEEETKN
Sbjct: 253 MNEVKESSSNSSVMSNYSGYQNSGGFSWESEKKLEKLLQFETNQMKNMGLKGSSEEETKN 312

[Close]

BLAST of Carg10321 vs. NCBI nr
Match: XP_022921347.1 (transcription factor MYB86-like [Cucurbita moschata])

HSP 1 Score: 247.7 bits (631), Expect = 2.8e-62
Identity = 144/217 (66.36%), Postives = 154/217 (70.97%), Query Frame = 0


Query: 1   MEAMKDQKPRGEVPHLLQGNISNITISSEASILNDSNQYYKQTED--------------- 60
           MEAMKDQKPR EVPHLLQGN+SNITISSEASILNDSN Y+KQTED               
Sbjct: 133 MEAMKDQKPREEVPHLLQGNVSNITISSEASILNDSNHYFKQTEDSXXXXXXXXXXXXXX 192

Query: 61  ------------------------------------SSQH-FVNKIEFDSLSSYLGGSGF 120
                                               SS+H  +++ +F   S    GSGF
Sbjct: 193 XXXXXXXXXXXXXXXXXXXXXXXXXXNSSMGMPSYTSSEHGNMSRTDFSENS----GSGF 252

Query: 121 SCFFMNEVKESSSNSSVMSNYSGYQNSGGFSWESENKLEKLLQFETNQMKNMGLKGSSEE 166
           SCFFMNEVKESSSNSSVMSNYSGYQNSGGFSWESENKLEKLLQFETNQMKNMGLKGS+EE
Sbjct: 253 SCFFMNEVKESSSNSSVMSNYSGYQNSGGFSWESENKLEKLLQFETNQMKNMGLKGSTEE 312

[Close]

BLAST of Carg10321 vs. NCBI nr
Match: XP_023515754.1 (transcription factor MYB86-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 246.5 bits (628), Expect = 6.3e-62
Identity = 145/217 (66.82%), Postives = 151/217 (69.59%), Query Frame = 0


Query: 1   MEAMKDQKPRGEVPHLLQGNISNITISSEASILNDSNQYYKQTED--------------- 60
           MEAMKDQKPRGEVPHLLQ N+SNITISSEASILNDSN YYKQTED               
Sbjct: 133 MEAMKDQKPRGEVPHLLQVNVSNITISSEASILNDSNHYYKQTEDSXXXXXXXXXXXXXX 192

Query: 61  ------------------------------------SSQH-FVNKIEFDSLSSYLGGSGF 120
                                               SS+H  +++ +F   S    GSGF
Sbjct: 193 XXXXXXXXXXXXXXXXXXXXXXXXXXNSSMGMPSYTSSEHGNMSRTDFSENS----GSGF 252

Query: 121 SCFFMNEVKESSSNSSVMSNYSGYQNSGGFSWESENKLEKLLQFETNQMKNMGLKGSSEE 166
           SCF MNEVKESSSNSSVMSNYSGYQNSGGFSWESE KLEKLLQFETNQMKNMGLKGSSEE
Sbjct: 253 SCFLMNEVKESSSNSSVMSNYSGYQNSGGFSWESEKKLEKLLQFETNQMKNMGLKGSSEE 312

[Close]

BLAST of Carg10321 vs. NCBI nr
Match: XP_022933374.1 (transcription factor MYB61-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 197.2 bits (500), Expect = 4.4e-47
Identity = 125/216 (57.87%), Postives = 138/216 (63.89%), Query Frame = 0


Query: 1   MEAMKDQKPRGE-VPHLLQGNISNITISSEASILNDSNQYYKQTEDSSQHFVNKIEFDSL 60
           ME M+DQKPR E  PH L GNISN+TISS     NDSN +YKQ EDSS HFVNKIEFDSL
Sbjct: 65  MEGMQDQKPRMEAAPHHLHGNISNLTISS-----NDSNHHYKQIEDSSHHFVNKIEFDSL 124

Query: 61  SSYLG---------------------------------------------GSGFSCFFMN 120
           SSY G                                              SG S FFMN
Sbjct: 125 SSYFGAQIQHQSNIRSCDQNFLYSNSSFGMPSYSSSEHGNTSRTDFSENSASGLSSFFMN 184

Query: 121 EVKESSSNSSVMSNYSGYQ---NSGGFSWESENKLEKLLQFETNQMKNMGL-KG-SSEEE 166
           EVKESSSNSSV+SNYSG+    N+GGFSWE+ENKLE L QF+TN++KNM L KG SS EE
Sbjct: 185 EVKESSSNSSVVSNYSGFHGKLNNGGFSWEAENKLESLFQFQTNEVKNMELMKGSSSREE 244

[Close]

BLAST of Carg10321 vs. NCBI nr
Match: XP_022933373.1 (transcription factor MYB61-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 197.2 bits (500), Expect = 4.4e-47
Identity = 125/216 (57.87%), Postives = 138/216 (63.89%), Query Frame = 0


Query: 1   MEAMKDQKPRGE-VPHLLQGNISNITISSEASILNDSNQYYKQTEDSSQHFVNKIEFDSL 60
           ME M+DQKPR E  PH L GNISN+TISS     NDSN +YKQ EDSS HFVNKIEFDSL
Sbjct: 133 MEGMQDQKPRMEAAPHHLHGNISNLTISS-----NDSNHHYKQIEDSSHHFVNKIEFDSL 192

Query: 61  SSYLG---------------------------------------------GSGFSCFFMN 120
           SSY G                                              SG S FFMN
Sbjct: 193 SSYFGAQIQHQSNIRSCDQNFLYSNSSFGMPSYSSSEHGNTSRTDFSENSASGLSSFFMN 252

Query: 121 EVKESSSNSSVMSNYSGYQ---NSGGFSWESENKLEKLLQFETNQMKNMGL-KG-SSEEE 166
           EVKESSSNSSV+SNYSG+    N+GGFSWE+ENKLE L QF+TN++KNM L KG SS EE
Sbjct: 253 EVKESSSNSSVVSNYSGFHGKLNNGGFSWEAENKLESLFQFQTNEVKNMELMKGSSSREE 312

[Close]

BLAST of Carg10321 vs. TrEMBL
Match: tr|A0A1S3CLN3|A0A1S3CLN3_CUCME (myb-related protein 308-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502379 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.3e-23
Identity = 73/127 (57.48%), Postives = 83/127 (65.35%), Query Frame = 0


Query: 41  KQTEDSSQHFVNKIEFDSLSSYLGGSGFSCFFMNEVKESSSNSSVMSNYSGYQNSGGFSW 100
           K  E+SSQHFVNKIEFDSLSSYL G                                FSW
Sbjct: 169 KINEESSQHFVNKIEFDSLSSYLNGE--------------------XXXXXXXXXXXFSW 228

Query: 101 ESENKLEKLLQFETNQMKNMGLKGSSE-EETKNIETQMNSASFGSY-PLMSMSENERGGS 160
           ESENKLE LL+F+TNQMKN+  KGSS  EE+K I+ Q+NSA+FGSY PLMSMSENER GS
Sbjct: 229 ESENKLENLLEFQTNQMKNLEFKGSSSVEESKIIQNQINSATFGSYHPLMSMSENERAGS 275

Query: 161 FGVFHNI 166
           FG+FH+I
Sbjct: 289 FGIFHHI 275

[Close]

BLAST of Carg10321 vs. TrEMBL
Match: tr|A0A1S3BPY1|A0A1S3BPY1_CUCME (protein ODORANT1-like OS=Cucumis melo OX=3656 GN=LOC103492057 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 4.2e-22
Identity = 71/128 (55.47%), Postives = 81/128 (63.28%), Query Frame = 0


Query: 40  YKQTEDSSQHFVNKIEFDSLSSYLGGSGFSCFFMNEVKESSSNSSVMSNYSGYQNSGGFS 99
           YK  E+SSQHFVNKIEFDSLSSYL G                                  
Sbjct: 134 YKINEESSQHFVNKIEFDSLSSYLNG--------------------XXXXXXXXXXXXXL 193

Query: 100 WESENKLEKLLQFETNQMKNMGLKGSSE-EETKNIETQMNSASFGSY-PLMSMSENERGG 159
           WESENKLE LL+F+TNQMKN+  KGSS  EE+K I+ Q+NSA+FGSY PLMSMSENER G
Sbjct: 194 WESENKLENLLEFQTNQMKNLEFKGSSSIEESKIIQNQINSATFGSYHPLMSMSENERAG 241

Query: 160 SFGVFHNI 166
           SFG+ H+I
Sbjct: 254 SFGIVHHI 241

[Close]

BLAST of Carg10321 vs. TrEMBL
Match: tr|A0A1S3CLT8|A0A1S3CLT8_CUCME (transcription factor MYB32-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502379 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.5e-19
Identity = 81/196 (41.33%), Postives = 94/196 (47.96%), Query Frame = 0


Query: 41  KQTEDSSQHFVNKIEFDSLSSYLG----------------------------------GS 100
           K  E+SSQHFVNKIEFDSLSSYL                                   GS
Sbjct: 169 KINEESSQHFVNKIEFDSLSSYLNGEYNNNSQXXXXXXXXXIRSYDQNFFYSNSSIGMGS 228

Query: 101 GFSCFFMNEVKESSSNSSVMSNYSGYQNS------------------------------- 160
             SC   N  +   S +S     S + N                                
Sbjct: 229 YSSCEHGNMSRTDFSENSASGLTSFFMNEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 288

Query: 161 ----GGFSWESENKLEKLLQFETNQMKNMGLKGSSE-EETKNIETQMNSASFGSY-PLMS 166
                 FSWESENKLE LL+F+TNQMKN+  KGSS  EE+K I+ Q+NSA+FGSY PLMS
Sbjct: 289 XXXXXXFSWESENKLENLLEFQTNQMKNLEFKGSSSVEESKIIQNQINSATFGSYHPLMS 348

[Close]

BLAST of Carg10321 vs. TrEMBL
Match: tr|A0A1S3C5Z6|A0A1S3C5Z6_CUCME (probable serine/threonine-protein kinase clkA OS=Cucumis melo OX=3656 GN=LOC103497254 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 7.4e-19
Identity = 92/246 (37.40%), Postives = 108/246 (43.90%), Query Frame = 0


Query: 1   MEAMKDQKP----RGEVPHL--------LQGNISNITISSEASILNDSNQYYKQTEDSSQ 60
           MEA+KD+K       E P +        L GNIS I                   E+SSQ
Sbjct: 17  MEAIKDEKKNSTYNNEKPKMEAIXXXXXLHGNISKI------------------NEESSQ 76

Query: 61  HFVNKIEFDSLSSYLG----------------------------------GSGFSCFFMN 120
           HFVNKIEFDSLSSYL                                   GS  SC   N
Sbjct: 77  HFVNKIEFDSLSSYLNGEYNNNSQFASVQYNSNIRSYDQNFFYSNSSIGIGSYSSCEHGN 136

Query: 121 EVKESSSNSSVMSNYSGYQNS----------------------------------GGFSW 165
             +   S +S     S + N                                     FSW
Sbjct: 137 VSRTDFSENSASGLTSFFMNEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFSW 196

[Close]

BLAST of Carg10321 vs. TrEMBL
Match: tr|A0A0A0LNU6|A0A0A0LNU6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G004110 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.0e-16
Identity = 49/65 (75.38%), Postives = 57/65 (87.69%), Query Frame = 0


Query: 102 SENKLEKLLQFETNQMKNMGLKGSSE-EETKNIETQMNSASFGSYPLMSMSENERGGSFG 161
           SENKLE LL+F+TNQMKN+  KGSS  EETK I+ Q+NSA+FGSYPLMSMSENER GSFG
Sbjct: 61  SENKLENLLEFQTNQMKNLEFKGSSSVEETKIIQNQINSATFGSYPLMSMSENERAGSFG 120

Query: 162 VFHNI 166
           +FH+I
Sbjct: 121 IFHHI 125

The following BLAST results are available for this feature:

BLAST of Carg10321 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022988639.1	4.9e-75	75.12	transcription factor MYB86-like [Cucurbita maxima]	[more]
XP_022921347.1	2.8e-62	66.36	transcription factor MYB86-like [Cucurbita moschata]	[more]
XP_023515754.1	6.3e-62	66.82	transcription factor MYB86-like [Cucurbita pepo subsp. pepo]	[more]
XP_022933374.1	4.4e-47	57.87	transcription factor MYB61-like isoform X2 [Cucurbita moschata]	[more]
XP_022933373.1	4.4e-47	57.87	transcription factor MYB61-like isoform X1 [Cucurbita moschata]	[more]

BLAST of Carg10321 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg10321 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg10321 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CLN3\|A0A1S3CLN3_CUCME	1.3e-23	57.48	myb-related protein 308-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502379 ...	[more]
tr\|A0A1S3BPY1\|A0A1S3BPY1_CUCME	4.2e-22	55.47	protein ODORANT1-like OS=Cucumis melo OX=3656 GN=LOC103492057 PE=4 SV=1	[more]
tr\|A0A1S3CLT8\|A0A1S3CLT8_CUCME	2.5e-19	41.33	transcription factor MYB32-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC1035023...	[more]
tr\|A0A1S3C5Z6\|A0A1S3C5Z6_CUCME	7.4e-19	37.40	probable serine/threonine-protein kinase clkA OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
tr\|A0A0A0LNU6\|A0A0A0LNU6_CUCSA	2.0e-16	75.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G004110 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg10321-RA	Carg10321-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg10321	Csa1G004110	Cucumber (Chinese Long) v2	carcuB0391
Carg10321	MELO3C026265	Melon (DHL92) v3.5.1	carmeB0369
Carg10321	CmaCh10G001010	Cucurbita maxima (Rimu)	carcmaB0510
Carg10321	CmoCh10G001040	Cucurbita moschata (Rifu)	carcmoB0493
Carg10321	Cp4.1LG04g15740	Cucurbita pepo (Zucchini)	carcpeB0514
Carg10321	Cp4.1LG18g08610	Cucurbita pepo (Zucchini)	carcpeB0508
Carg10321	Cla97C06G126990	Watermelon (97103) v2	carwmbB0382
Carg10321	Bhi02G000382	Wax gourd	carwgoB0449

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg10321	Carg20204	Silver-seed gourd	carcarB396

The following block(s) are covering this gene:


Gene	Organism	Block
Carg10321	Silver-seed gourd	carcarB387
Carg10321	Silver-seed gourd	carcarB388
Carg10321	Silver-seed gourd	carcarB393
Carg10321	Cucumber (Gy14) v2	carcgybB0371
Carg10321	Cucumber (Gy14) v1	carcgyB0423
Carg10321	Cucurbita maxima (Rimu)	carcmaB0511
Carg10321	Cucurbita maxima (Rimu)	carcmaB0513
Carg10321	Cucurbita moschata (Rifu)	carcmoB0494
Carg10321	Cucurbita moschata (Rifu)	carcmoB0495
Carg10321	Cucurbita moschata (Rifu)	carcmoB0498
Carg10321	Cucurbita moschata (Rifu)	carcmoB0501
Carg10321	Cucurbita pepo (Zucchini)	carcpeB0509
Carg10321	Cucurbita pepo (Zucchini)	carcpeB0513
Carg10321	Wild cucumber (PI 183967)	carcpiB0396
Carg10321	Cucumber (Chinese Long) v3	carcucB0395
Carg10321	Bottle gourd (USVL1VR-Ls)	carlsiB331
Carg10321	Melon (DHL92) v3.6.1	carmedB0375
Carg10321	Watermelon (Charleston Gray)	carwcgB0357
Carg10321	Watermelon (97103) v1	carwmB0353
Carg10321	Watermelon (97103) v1	carwmB0356
Carg10321	Watermelon (97103) v2	carwmbB0383
Carg10321	Wax gourd	carwgoB0443