Csa1G000730 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G000730
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 129595 .. 130200 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAGAAAGGGTGGTGAGTATGAGAAGGCAAATGACAGAGAAATAAGAAATGGCAATGGAAGCAGTAACGCGATTACAAAAGGAGGGAAAATGGTTACAGATGGGGGACCAGCCCGTGTGGGTGTTGCCGTACTTGCCGACGAAGCCGATGGCGGTGGCAGCAGAGCAACCGCTGAGCACCAATCCCATCATCAACAAGTCATGGAGACGAAAGAAGAAAAATATGTAGAAATTGAGCGGGGTACTAGTGTTGCTGCTTGGACGAGTTGATAAGAAAATTAGAAAGCAGAGGGAGAGAAAACAGAAGGCAGATGCAATAGCGTTAGCAAAAGCAAAGAACTGGAAAGCAGAGGAGTCGTTGTATCGAGCGTCAAAAGGGATACCAAAAATGAGAACGGATTGCTTGGCGGTGAGGATGATCCAGGTAGCAGCCAGTGTGGAGGCAATTGCCAAAACTCTGAGGATAATCTGGGAATAACAAAGATGGAGGTTGGTGATGGCCGTGGGGTGATCATGATCATGATCGTCAGAACCAGACTTGGGCTCCAAATCCATATCATTGCCATTGCCATTGCCATTGCCATTGGCCATGTGATGGGATGA

mRNA sequence

ATGGAGAGAAAGGGTGGTGAGTATGAGAAGGCAAATGACAGAGAAATAAGAAATGGCAATGGAAGCAGTAACGCGATTACAAAAGGAGGGAAAATGGTTACAGATGGGGGACCAGCCCGTGTGGGTGTTGCCGTACTTGCCGACGAAGCCGATGGCGGTGGCAGCAGAGCAACCGCTGAGCACCAATCCCATCATCAACAAGTCATGGAGACGAAAGAAGAAAAATATGTAGAAATTGAGCGGGAGGGAGAGAAAACAGAAGGCAGATGCAATAGCGTTAGCAAAAGCAAAGAACTGGAAAGCAGAGGAGTCGTTGTATCGAGCGTCAAAAGGGATACCAAAAATGAGAACGGATTGCTTGGCGGTGAGGATGATCCAGGTAGCAGCCAGTGTGGAGGCAATTGCCAAAACTCTGAGGATAATCTGGGAATAACAAAGATGGAGGTTGGTGATGGCCGTGGGGTGATCATGATCATGATCGTCAGAACCAGACTTGGGCTCCAAATCCATATCATTGCCATTGCCATTGCCATTGCCATTGGCCATGTGATGGGATGA

Coding sequence (CDS)

ATGGAGAGAAAGGGTGGTGAGTATGAGAAGGCAAATGACAGAGAAATAAGAAATGGCAATGGAAGCAGTAACGCGATTACAAAAGGAGGGAAAATGGTTACAGATGGGGGACCAGCCCGTGTGGGTGTTGCCGTACTTGCCGACGAAGCCGATGGCGGTGGCAGCAGAGCAACCGCTGAGCACCAATCCCATCATCAACAAGTCATGGAGACGAAAGAAGAAAAATATGTAGAAATTGAGCGGGAGGGAGAGAAAACAGAAGGCAGATGCAATAGCGTTAGCAAAAGCAAAGAACTGGAAAGCAGAGGAGTCGTTGTATCGAGCGTCAAAAGGGATACCAAAAATGAGAACGGATTGCTTGGCGGTGAGGATGATCCAGGTAGCAGCCAGTGTGGAGGCAATTGCCAAAACTCTGAGGATAATCTGGGAATAACAAAGATGGAGGTTGGTGATGGCCGTGGGGTGATCATGATCATGATCGTCAGAACCAGACTTGGGCTCCAAATCCATATCATTGCCATTGCCATTGCCATTGCCATTGGCCATGTGATGGGATGA

Protein sequence

MERKGGEYEKANDREIRNGNGSSNAITKGGKMVTDGGPARVGVAVLADEADGGGSRATAEHQSHHQQVMETKEEKYVEIEREGEKTEGRCNSVSKSKELESRGVVVSSVKRDTKNENGLLGGEDDPGSSQCGGNCQNSEDNLGITKMEVGDGRGVIMIMIVRTRLGLQIHIIAIAIAIAIGHVMG*

Homology

[Close]

BLAST of Csa1G000730 vs. TrEMBL
Match: A0A0A0LNG7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G000730 PE=4 SV=1)

HSP 1 Score: 369.0 bits (946), Expect = 3.4e-99
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 1


Query: 1   MERKGGEYEKANDREIRNGNGSSNAITKGGKMVTDGGPARVGVAVLADEADGGGSRATAE 60
           MERKGGEYEKANDREIRNGNGSSNAITKGGKMVTDGGPARVGVAVLADEADGGGSRATAE
Sbjct: 1   MERKGGEYEKANDREIRNGNGSSNAITKGGKMVTDGGPARVGVAVLADEADGGGSRATAE 60

Query: 61  HQSHHQQVMETKEEKYVEIEREGEKTEGRCNSVSKSKELESRGVVVSSVKRDTKNENGLL 120
           HQSHHQQVMETKEEKYVEIEREGEKTEGRCNSVSKSKELESRGVVVSSVKRDTKNENGLL
Sbjct: 61  HQSHHQQVMETKEEKYVEIEREGEKTEGRCNSVSKSKELESRGVVVSSVKRDTKNENGLL 120

Query: 121 GGEDDPGSSQCGGNCQNSEDNLGITKMEVGDGRGVIMIMIVRTRLGLQIHIIAIAIAIAI 180
           GGEDDPGSSQCGGNCQNSEDNLGITKMEVGDGRGVIMIMIVRTRLGLQIHIIAIAIAIAI
Sbjct: 121 GGEDDPGSSQCGGNCQNSEDNLGITKMEVGDGRGVIMIMIVRTRLGLQIHIIAIAIAIAI 180

Query: 181 GHVMG 186
           GHVMG
Sbjct: 181 GHVMG 185

[Close]

BLAST of Csa1G000730 vs. NCBI nr
Match: gi|700208354|gb|KGN63450.1| (hypothetical protein Csa_1G000730 [Cucumis sativus])

HSP 1 Score: 369.0 bits (946), Expect = 4.8e-99
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 1


Query: 1   MERKGGEYEKANDREIRNGNGSSNAITKGGKMVTDGGPARVGVAVLADEADGGGSRATAE 60
           MERKGGEYEKANDREIRNGNGSSNAITKGGKMVTDGGPARVGVAVLADEADGGGSRATAE
Sbjct: 1   MERKGGEYEKANDREIRNGNGSSNAITKGGKMVTDGGPARVGVAVLADEADGGGSRATAE 60

Query: 61  HQSHHQQVMETKEEKYVEIEREGEKTEGRCNSVSKSKELESRGVVVSSVKRDTKNENGLL 120
           HQSHHQQVMETKEEKYVEIEREGEKTEGRCNSVSKSKELESRGVVVSSVKRDTKNENGLL
Sbjct: 61  HQSHHQQVMETKEEKYVEIEREGEKTEGRCNSVSKSKELESRGVVVSSVKRDTKNENGLL 120

Query: 121 GGEDDPGSSQCGGNCQNSEDNLGITKMEVGDGRGVIMIMIVRTRLGLQIHIIAIAIAIAI 180
           GGEDDPGSSQCGGNCQNSEDNLGITKMEVGDGRGVIMIMIVRTRLGLQIHIIAIAIAIAI
Sbjct: 121 GGEDDPGSSQCGGNCQNSEDNLGITKMEVGDGRGVIMIMIVRTRLGLQIHIIAIAIAIAI 180

Query: 181 GHVMG 186
           GHVMG
Sbjct: 181 GHVMG 185

The following BLAST results are available for this feature:

BLAST of Csa1G000730 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LNG7_CUCSA	3.4e-99	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G000730 PE=4 SV=1	[more]

BLAST of Csa1G000730 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700208354\|gb\|KGN63450.1\|	4.8e-99	100.00	hypothetical protein Csa_1G000730 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU093436	cucumber EST collection version 3.0	transcribed_cluster
CU163240	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G000730.1	Csa1G000730.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU163240	CU163240	transcribed_cluster
CU093436	CU093436	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 69..89 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G000730	ClCG06G018220	Watermelon (Charleston Gray)	cuwcgB081
Csa1G000730	Cp4.1LG18g09470	Cucurbita pepo (Zucchini)	cpecuB361
Csa1G000730	CsGy1G000240	Cucumber (Gy14) v2	cgybcuB001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G000730	Cucumber (Chinese Long) v2	cucuB002
Csa1G000730	Cucumber (Chinese Long) v2	cucuB014
Csa1G000730	Watermelon (97103) v1	cuwmB094
Csa1G000730	Cucumber (Gy14) v1	cgycuB224
Csa1G000730	Cucurbita maxima (Rimu)	cmacuB048
Csa1G000730	Cucurbita maxima (Rimu)	cmacuB086
Csa1G000730	Cucurbita maxima (Rimu)	cmacuB225
Csa1G000730	Cucurbita moschata (Rifu)	cmocuB076
Csa1G000730	Cucurbita moschata (Rifu)	cmocuB037
Csa1G000730	Cucurbita moschata (Rifu)	cmocuB211
Csa1G000730	Cucurbita moschata (Rifu)	cmocuB393
Csa1G000730	Melon (DHL92) v3.5.1	cumeB022
Csa1G000730	Melon (DHL92) v3.5.1	cumeB054
Csa1G000730	Melon (DHL92) v3.5.1	cumeB078
Csa1G000730	Watermelon (Charleston Gray)	cuwcgB052
Csa1G000730	Watermelon (97103) v1	cuwmB028
Csa1G000730	Cucurbita pepo (Zucchini)	cpecuB513
Csa1G000730	Cucurbita pepo (Zucchini)	cpecuB653
Csa1G000730	Bottle gourd (USVL1VR-Ls)	culsiB070
Csa1G000730	Bottle gourd (USVL1VR-Ls)	culsiB041
Csa1G000730	Cucumber (Gy14) v2	cgybcuB014
Csa1G000730	Cucumber (Gy14) v2	cgybcuB096
Csa1G000730	Melon (DHL92) v3.6.1	cumedB018
Csa1G000730	Melon (DHL92) v3.6.1	cumedB046
Csa1G000730	Silver-seed gourd	carcuB0391
Csa1G000730	Silver-seed gourd	carcuB0636
Csa1G000730	Watermelon (97103) v2	cuwmbB050
Csa1G000730	Watermelon (97103) v2	cuwmbB078
Csa1G000730	Wax gourd	cuwgoB061
Csa1G000730	Wax gourd	cuwgoB079