CsGy1G000240 (gene) Cucumber (Gy14) v2

Overview
NameCsGy1G000240
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr1 : 128917 .. 129522 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAGAAAGGATGGTGAGTATGAGAAGGCAAATGACAGAGAAATAAGAAATGGCAATGGAAGCAGTAACGCGATTACAAAAGGAGGGAAAATGGTTACAGATGGGGGACCAGCCCGTGTGGGTGTTGCCGTACTTGCCGACGAAGCCGATGGCGGTGGCAGCAGAGCAACCGCTGAGCACCAATCCCATCATCAACAAGTCATGGAGACGAAAGAAGAAAAATATGTAGAAATTGAGCGGGGTACTAGTGTTGCTGCTTGGACGAGTTGATAAGAAAATTAGAAAGCAGAGGGAGAGAAAACAGAAGGCAGATGCAATAGCGTTAGCAAAAGCAAAGAACTGGAAAGCAGAGGAGTCGTTGTATCGAGCGTCAAAAGGGATACCAAAAATGAGAACGGATTGCTTGGCGGTGAGGATGATCCAGGTAGCAGCCAGTGTGGAGGCAATTGCCAAAACTCTGAGGATAATCTGGGAATAACAAAGATGGAGGTTGGTGATGGCCGTGGGGTGATCATGATCATGATCGTCAGAACCAGACTTGGGCTCCAAATCCATATCATTGCCATTGCCATTGCCATTGCCATTGGCCATGTGATGGGATGA

mRNA sequence

ATGGAGAGAAAGGATGGTGAGTATGAGAAGGCAAATGACAGAGAAATAAGAAATGGCAATGGAAGCAGTAACGCGATTACAAAAGGAGGGAAAATGGTTACAGATGGGGGACCAGCCCGTGTGGGTGTTGCCGTACTTGCCGACGAAGCCGATGGCGGTGGCAGCAGAGCAACCGCTGAGCACCAATCCCATCATCAACAAGTCATGGAGACGAAAGAAGAAAAATATGTAGAAATTGAGCGGGAGGGAGAGAAAACAGAAGGCAGATGCAATAGCGTTAGCAAAAGCAAAGAACTGGAAAGCAGAGGAGTCGTTGTATCGAGCGTCAAAAGGGATACCAAAAATGAGAACGGATTGCTTGGCGGTGAGGATGATCCAGGTAGCAGCCAGTGTGGAGGCAATTGCCAAAACTCTGAGGATAATCTGGGAATAACAAAGATGGAGGTTGGTGATGGCCGTGGGGTGATCATGATCATGATCGTCAGAACCAGACTTGGGCTCCAAATCCATATCATTGCCATTGCCATTGCCATTGCCATTGGCCATGTGATGGGATGA

Coding sequence (CDS)

ATGGAGAGAAAGGATGGTGAGTATGAGAAGGCAAATGACAGAGAAATAAGAAATGGCAATGGAAGCAGTAACGCGATTACAAAAGGAGGGAAAATGGTTACAGATGGGGGACCAGCCCGTGTGGGTGTTGCCGTACTTGCCGACGAAGCCGATGGCGGTGGCAGCAGAGCAACCGCTGAGCACCAATCCCATCATCAACAAGTCATGGAGACGAAAGAAGAAAAATATGTAGAAATTGAGCGGGAGGGAGAGAAAACAGAAGGCAGATGCAATAGCGTTAGCAAAAGCAAAGAACTGGAAAGCAGAGGAGTCGTTGTATCGAGCGTCAAAAGGGATACCAAAAATGAGAACGGATTGCTTGGCGGTGAGGATGATCCAGGTAGCAGCCAGTGTGGAGGCAATTGCCAAAACTCTGAGGATAATCTGGGAATAACAAAGATGGAGGTTGGTGATGGCCGTGGGGTGATCATGATCATGATCGTCAGAACCAGACTTGGGCTCCAAATCCATATCATTGCCATTGCCATTGCCATTGCCATTGGCCATGTGATGGGATGA

Protein sequence

MERKDGEYEKANDREIRNGNGSSNAITKGGKMVTDGGPARVGVAVLADEADGGGSRATAEHQSHHQQVMETKEEKYVEIEREGEKTEGRCNSVSKSKELESRGVVVSSVKRDTKNENGLLGGEDDPGSSQCGGNCQNSEDNLGITKMEVGDGRGVIMIMIVRTRLGLQIHIIAIAIAIAIGHVMG
Homology
[Close]
BLAST of CsGy1G000240 vs. NCBI nr
Match: KGN63450.1 (hypothetical protein Csa_1G000730 [Cucumis sativus])

HSP 1 Score: 286.2 bits (731), Expect = 8.0e-74
Identity = 150/151 (99.34%), Postives = 150/151 (99.34%), Query Frame = 0 

Query: 1   MERKDGEYEKANDREIRNGNGSSNAITKGGKMVTDGGPARVGVAVLADEADGGGSRATAE 60
           MERK GEYEKANDREIRNGNGSSNAITKGGKMVTDGGPARVGVAVLADEADGGGSRATAE
Sbjct: 1   MERKGGEYEKANDREIRNGNGSSNAITKGGKMVTDGGPARVGVAVLADEADGGGSRATAE 60

Query: 61  HQSHHQQVMETKEEKYVEIEREGEKTEGRCNSVSKSKELESRGVVVSSVKRDTKNENGLL 120
           HQSHHQQVMETKEEKYVEIEREGEKTEGRCNSVSKSKELESRGVVVSSVKRDTKNENGLL
Sbjct: 61  HQSHHQQVMETKEEKYVEIEREGEKTEGRCNSVSKSKELESRGVVVSSVKRDTKNENGLL 120

Query: 121 GGEDDPGSSQCGGNCQNSEDNLGITKMEVGD 152
           GGEDDPGSSQCGGNCQNSEDNLGITKMEVGD
Sbjct: 121 GGEDDPGSSQCGGNCQNSEDNLGITKMEVGD 151

[Close]
BLAST of CsGy1G000240 vs. TrEMBL
Match: tr|A0A0A0LNG7|A0A0A0LNG7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G000730 PE=4 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 5.3e-74
Identity = 150/151 (99.34%), Postives = 150/151 (99.34%), Query Frame = 0 

Query: 1   MERKDGEYEKANDREIRNGNGSSNAITKGGKMVTDGGPARVGVAVLADEADGGGSRATAE 60
           MERK GEYEKANDREIRNGNGSSNAITKGGKMVTDGGPARVGVAVLADEADGGGSRATAE
Sbjct: 1   MERKGGEYEKANDREIRNGNGSSNAITKGGKMVTDGGPARVGVAVLADEADGGGSRATAE 60

Query: 61  HQSHHQQVMETKEEKYVEIEREGEKTEGRCNSVSKSKELESRGVVVSSVKRDTKNENGLL 120
           HQSHHQQVMETKEEKYVEIEREGEKTEGRCNSVSKSKELESRGVVVSSVKRDTKNENGLL
Sbjct: 61  HQSHHQQVMETKEEKYVEIEREGEKTEGRCNSVSKSKELESRGVVVSSVKRDTKNENGLL 120

Query: 121 GGEDDPGSSQCGGNCQNSEDNLGITKMEVGD 152
           GGEDDPGSSQCGGNCQNSEDNLGITKMEVGD
Sbjct: 121 GGEDDPGSSQCGGNCQNSEDNLGITKMEVGD 151

The following BLAST results are available for this feature:
BLAST of CsGy1G000240 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN63450.18.0e-7499.34hypothetical protein Csa_1G000730 [Cucumis sativus][more]
BLAST of CsGy1G000240 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy1G000240 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy1G000240 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LNG7|A0A0A0LNG7_CUCSA5.3e-7499.34Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G000730 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G000240.1CsGy1G000240.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 69..89
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 110..135

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy1G000240Csa1G000730Cucumber (Chinese Long) v2cgybcuB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy1G000240Watermelon (97103) v1cgybwmB028
CsGy1G000240Watermelon (97103) v1cgybwmB094
CsGy1G000240Wild cucumber (PI 183967)cgybcpiB001
CsGy1G000240Wild cucumber (PI 183967)cgybcpiB012
CsGy1G000240Silver-seed gourdcarcgybB0371
CsGy1G000240Silver-seed gourdcarcgybB0608
CsGy1G000240Cucumber (Chinese Long) v3cgybcucB002
CsGy1G000240Cucumber (Chinese Long) v3cgybcucB011
CsGy1G000240Watermelon (97103) v2cgybwmbB076
CsGy1G000240Watermelon (97103) v2cgybwmbB048
CsGy1G000240Wax gourdcgybwgoB060
CsGy1G000240Wax gourdcgybwgoB077
CsGy1G000240Melon (DHL92) v3.6.1cgybmedB043
CsGy1G000240Cucumber (Gy14) v2cgybcgybB005
CsGy1G000240Cucurbita maxima (Rimu)cgybcmaB004
CsGy1G000240Cucurbita maxima (Rimu)cgybcmaB028
CsGy1G000240Cucurbita maxima (Rimu)cgybcmaB045
CsGy1G000240Cucurbita maxima (Rimu)cgybcmaB081
CsGy1G000240Cucurbita moschata (Rifu)cgybcmoB005
CsGy1G000240Cucurbita moschata (Rifu)cgybcmoB028
CsGy1G000240Cucurbita moschata (Rifu)cgybcmoB032
CsGy1G000240Cucurbita moschata (Rifu)cgybcmoB076
CsGy1G000240Cucurbita moschata (Rifu)cgybcmoB097
CsGy1G000240Cucurbita pepo (Zucchini)cgybcpeB015
CsGy1G000240Cucurbita pepo (Zucchini)cgybcpeB053
CsGy1G000240Cucurbita pepo (Zucchini)cgybcpeB078
CsGy1G000240Cucurbita pepo (Zucchini)cgybcpeB117
CsGy1G000240Cucurbita pepo (Zucchini)cgybcpeB126
CsGy1G000240Cucumber (Chinese Long) v2cgybcuB012
CsGy1G000240Bottle gourd (USVL1VR-Ls)cgyblsiB035
CsGy1G000240Bottle gourd (USVL1VR-Ls)cgyblsiB067
CsGy1G000240Melon (DHL92) v3.5.1cgybmeB020
CsGy1G000240Melon (DHL92) v3.5.1cgybmeB048
CsGy1G000240Melon (DHL92) v3.6.1cgybmedB017
CsGy1G000240Watermelon (Charleston Gray)cgybwcgB048
CsGy1G000240Watermelon (Charleston Gray)cgybwcgB078