CsGy7G020210 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy7G020210
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha 2-like
Location	Chr7 : 22654389 .. 22656552 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATACAATTTGATTTCTATCAGCCCTAATTTCCCTTTCATGCATAGCCAAAGCCTATAACAGCTTCACTTTGCGGACGACGTGTCGTCTCCAAATGGGTTATGTTATGTTATAAGTTATAAGTCGGGGCCCAATTCAAGACAGCCGACGCGTCGTGTACGATTCAACCTCCCCTCACTTCACCGCAGCCAGATTCCGACAAGCTTCCGACGTCTACGGCATTATCGCTCTGTTCTTCTTCCAATCTACTCGCCATTAAGTTTCTGTTTTGAGATTCAGTAAGCTCATTCATTTCTGAATTTTCTTTAAAATTCGATACAAATTACCGAAAGATAGTTTCTTTTTGCTTCGAATTTGTTCCAACAAATTGAACTTCTTCTCTCTCTTGGACGATTTGGGCATTCCGTTTCTTTTCTTTACTAAGAATGTGCTATATGAGCTTGATCAGAAGTAGAATATCCACAAGTCCTGAAGGGTGATTTGGTTTTCACTTTTCTTCGAGCTGATTAGGTTATATGGTTATTTTCTGTGTTTGTTCTTGTTCTGTGCTTCCGTACTTCCGTACTTCCGTTCTGAAGTTTAATGTTTTTACATTACATTGCAAGCACCTGGACTATTATCACAGAACAATTGTTTGACTCTAGTCAAATTTGATGCTGCTTCCAGTCTAATTTCAGGATACGCTTGAATGGAAGCTAAAGTTTTAGATGATCTTCAGATTATTGGTACAGTTCTAGAGGATCAAGATTACTTGGAGAAGATAACCAAGTTACAAGGTTACCTCGATGAGGTGAAACTACTGCTTATTAGTTTCTATCTTGAAATGAAACCATAGTTGTTACTGTATTTTCCTCATGGTCATAGAACAGCTATCCTTCAATCAATTTATCATAACTTGCTTGCTTATTGCTCGATGGCTTATTAGTTAGGCAATTTCTTATCAATATGATTTTGAGTATTTTGTAATTTCTTAGTGCAGCCAGAAAATTACGTGTCTTTTCTCCTAGTGCACTGTGCAGTGGTGATTTAGGATTCCCTGAGCCATGAACAAGAATGAAGGAAACTAGAAAACGATAGAAGACAGCTTAATCTAGAAACAAGAAATAAGTAATGTACTATCAAGTTTTAACAGTTTTGGTATCTTTTCAAGGGGTTGTTCTTTGATTGGAAAAAAATGCTTTTCTATATAGTATTCTCTCTATCGTTCATAAAGAGGAGGTTAGGGTGTAGTTTGTTGGATTGTTTGCCTAAAAAAAAGGTATACATTAGGCAAACAAAACAAAGTAGGTATGTATAATGAGTAAAGAAATGAAAAAGAATGAGTAAAGAATCACATCCTTACCATTCTATTTGAAACTTGTGAGTCTTGTAGACTTTTACATGTCTTCTCCTTCACTTACTATCATAAAGATTGTTCTAAGATAAGACAGCTCGTGCAGATTTATAGTTGTTAGAATACCTTGAATGTGTTTTCTGGTGTTTTAGAATGATCCTACACGGGTTTTGCTAGGATTAAAGGAGTGCACTATACATAAACTCTCTAGCTCTAGAGGCACCACTGGAATCTTAAGTTTAACATTTTATCTTTAATAACAAAAACTGCTCATCCCCTGCCCATGCACGTAGCTAACTCATTGTCTCTATTTGGATTCTCTACGGTTTTAGTTTTCTTCTCATCTCAACAGTTATTATTACGAAAAATGATGGAACCAAAACAAAGTTCTGTTTAAATTTGACTAATTGATAGAATGAACTTTTGTTTCCAAGATTCTTAATTTGTAAAGTAATAATGTTCTTATAAATCATTATTTTGATGTCTGCTTTGTGGTTCATATTCTACTCAGGTGAAGAAGATTGTGAGTGAAAGCTGTTCCCAAGAGGTTTTAGAAGTGGCGTTGGACTCCATCTCATCCCTAATTACCATCCTCTCCTCCATGTCATCGTCTACCAAACTCCATTCTTCACTTTGATGGTATAAGAAGGTGAACTTCAAAACATGTATGATTATGTAAATAGTTACTCGTGTAAATAATATAACATGTTGTATTCTTGGTTGTTTCCCTTTGCTCATCTTCGTTTTGTGAAGAGCAGAGAAAAGCTTACGAGCATAAACATGTGCAAATTTATGAAAGTCAATGGGCTTCGAATTCTTTTTTTTTTTTTTTT

mRNA sequence

ATACAATTTGATTTCTATCAGCCCTAATTTCCCTTTCATGCATAGCCAAAGCCTATAACAGCTTCACTTTGCGGACGACGTGTCGTCTCCAAATGGGTTATGTTATGTTATAAGTTATAAGTCGGGGCCCAATTCAAGACAGCCGACGCGTCGTGTACGATTCAACCTCCCCTCACTTCACCGCAGCCAGATTCCGACAAGCTTCCGACGTCTACGGCATTATCGCTCTGTTCTTCTTCCAATCTACTCGCCATTAAGTTTCTGTTTTGAGATTCATCTAATTTCAGGATACGCTTGAATGGAAGCTAAAGTTTTAGATGATCTTCAGATTATTGGTACAGTTCTAGAGGATCAAGATTACTTGGAGAAGATAACCAAGTTACAAGGTTACCTCGATGAGGTGAAGAAGATTGTGAGTGAAAGCTGTTCCCAAGAGGTTTTAGAAGTGGCGTTGGACTCCATCTCATCCCTAATTACCATCCTCTCCTCCATGTCATCGTCTACCAAACTCCATTCTTCACTTTGATGGTATAAGAAGGTGAACTTCAAAACATGTATGATTATGTAAATAGTTACTCGTGTAAATAATATAACATGTTGTATTCTTGGTTGTTTCCCTTTGCTCATCTTCGTTTTGTGAAGAGCAGAGAAAAGCTTACGAGCATAAACATGTGCAAATTTATGAAAGTCAATGGGCTTCGAATTCTTTTTTTTTTTTTTTT

Coding sequence (CDS)

ATGGAAGCTAAAGTTTTAGATGATCTTCAGATTATTGGTACAGTTCTAGAGGATCAAGATTACTTGGAGAAGATAACCAAGTTACAAGGTTACCTCGATGAGGTGAAGAAGATTGTGAGTGAAAGCTGTTCCCAAGAGGTTTTAGAAGTGGCGTTGGACTCCATCTCATCCCTAATTACCATCCTCTCCTCCATGTCATCGTCTACCAAACTCCATTCTTCACTTTGA

Protein sequence

MEAKVLDDLQIIGTVLEDQDYLEKITKLQGYLDEVKKIVSESCSQEVLEVALDSISSLITILSSMSSSTKLHSSL

Homology

[Close]

BLAST of CsGy7G020210 vs. NCBI nr
Match: XP_011659590.1 (PREDICTED: pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha 2-like [Cucumis sativus] >KGN45427.1 hypothetical protein Csa_7G447890 [Cucumis sativus])

HSP 1 Score: 82.4 bits (202), Expect = 7.1e-13
Identity = 74/75 (98.67%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 1  MEAKVLDDLQIIGTVXXXXXXXXXXXXXXXXXXXXXXIVSESCSQEVLEVALDSISSLIT 60
          MEAKVLDDLQIIGTVXXXXXXXXXXXXXXXXXXXXXXIVSESCSQEVLE+ALDSISSLIT
Sbjct: 1  MEAKVLDDLQIIGTVXXXXXXXXXXXXXXXXXXXXXXIVSESCSQEVLELALDSISSLIT 60

Query: 61 ILSSMSSSTKLHSSL 76
          ILSSMSSSTKLHSSL
Sbjct: 61 ILSSMSSSTKLHSSL 75

[Close]

BLAST of CsGy7G020210 vs. NCBI nr
Match: XP_016902860.1 (PREDICTED: pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha 2-like [Cucumis melo])

HSP 1 Score: 78.2 bits (191), Expect = 1.3e-11
Identity = 51/75 (68.00%), Postives = 52/75 (69.33%), Query Frame = 0


Query: 1  MEAKVLDDLQIIGTVXXXXXXXXXXXXXXXXXXXXXXIVSESCSQEVLEVALDSISSLIT 60
          MEAKVL DLQIIGTV                      IVSESCSQEVLEVAL+SISSLIT
Sbjct: 1  MEAKVLVDLQIIGTVLEDQDYLEKITKLQGYLDEVKKIVSESCSQEVLEVALNSISSLIT 60

Query: 61 ILSSMSSSTKLHSSL 76
          ILSSMSSSTKLHSSL
Sbjct: 61 ILSSMSSSTKLHSSL 75

[Close]

BLAST of CsGy7G020210 vs. TrEMBL
Match: tr|A0A0A0KAL4|A0A0A0KAL4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G447890 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 4.7e-13
Identity = 74/75 (98.67%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 1  MEAKVLDDLQIIGTVXXXXXXXXXXXXXXXXXXXXXXIVSESCSQEVLEVALDSISSLIT 60
          MEAKVLDDLQIIGTVXXXXXXXXXXXXXXXXXXXXXXIVSESCSQEVLE+ALDSISSLIT
Sbjct: 1  MEAKVLDDLQIIGTVXXXXXXXXXXXXXXXXXXXXXXIVSESCSQEVLELALDSISSLIT 60

Query: 61 ILSSMSSSTKLHSSL 76
          ILSSMSSSTKLHSSL
Sbjct: 61 ILSSMSSSTKLHSSL 75

[Close]

BLAST of CsGy7G020210 vs. TrEMBL
Match: tr|A0A1S4E4F9|A0A1S4E4F9_CUCME (pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha 2-like OS=Cucumis melo OX=3656 GN=LOC103500631 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 8.9e-12
Identity = 51/75 (68.00%), Postives = 52/75 (69.33%), Query Frame = 0


Query: 1  MEAKVLDDLQIIGTVXXXXXXXXXXXXXXXXXXXXXXIVSESCSQEVLEVALDSISSLIT 60
          MEAKVL DLQIIGTV                      IVSESCSQEVLEVAL+SISSLIT
Sbjct: 1  MEAKVLVDLQIIGTVLEDQDYLEKITKLQGYLDEVKKIVSESCSQEVLEVALNSISSLIT 60

Query: 61 ILSSMSSSTKLHSSL 76
          ILSSMSSSTKLHSSL
Sbjct: 61 ILSSMSSSTKLHSSL 75

The following BLAST results are available for this feature:

BLAST of CsGy7G020210 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011659590.1	7.1e-13	98.67	PREDICTED: pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alph...	[more]
XP_016902860.1	1.3e-11	68.00	PREDICTED: pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alph...	[more]

BLAST of CsGy7G020210 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy7G020210 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy7G020210 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KAL4\|A0A0A0KAL4_CUCSA	4.7e-13	98.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G447890 PE=4 SV=1	[more]
tr\|A0A1S4E4F9\|A0A1S4E4F9_CUCME	8.9e-12	68.00	pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha 2-like OS...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy7G020210.1	CsGy7G020210.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR43650	FAMILY NOT NAMED	coord: 8..70
None	No IPR available	PANTHER	PTHR43650:SF2	PYROPHOSPHATE--FRUCTOSE 6-PHOSPHATE 1-PHOSPHOTRANSFERASE SUBUNIT ALPHA 1-RELATED	coord: 8..70

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy7G020210	Csa7G447890	Cucumber (Chinese Long) v2	cgybcuB323
CsGy7G020210	MELO3C024296	Melon (DHL92) v3.5.1	cgybmeB457
CsGy7G020210	ClCG09G001500	Watermelon (Charleston Gray)	cgybwcgB484
CsGy7G020210	CSPI07G21930	Wild cucumber (PI 183967)	cgybcpiB331
CsGy7G020210	CmaCh08G008430	Cucurbita maxima (Rimu)	cgybcmaB978
CsGy7G020210	CmoCh08G008130	Cucurbita moschata (Rifu)	cgybcmoB960
CsGy7G020210	Lsi02G028460	Bottle gourd (USVL1VR-Ls)	cgyblsiB472
CsGy7G020210	MELO3C024296.2	Melon (DHL92) v3.6.1	cgybmedB455
CsGy7G020210	CsaV3_7G033830	Cucumber (Chinese Long) v3	cgybcucB347
CsGy7G020210	Cla97C09G163610	Watermelon (97103) v2	cgybwmbB541
CsGy7G020210	Bhi09G000191	Wax gourd	cgybwgoB659
CsGy7G020210	Carg13889	Silver-seed gourd	carcgybB0604

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy7G020210	Cucurbita maxima (Rimu)	cgybcmaB919
CsGy7G020210	Cucurbita moschata (Rifu)	cgybcmoB902
CsGy7G020210	Cucurbita pepo (Zucchini)	cgybcpeB899
CsGy7G020210	Cucurbita pepo (Zucchini)	cgybcpeB924
CsGy7G020210	Watermelon (97103) v1	cgybwmB528
CsGy7G020210	Silver-seed gourd	carcgybB0764