CsGy7G003410 (gene) Cucumber (Gy14) v2

Overview
NameCsGy7G003410
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Description50S ribosomal protein L6
LocationChr7 : 2685617 .. 2689046 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCAATTCAGAATTCTGTCTTCTCCACCTTATCCTTCTCGTCACCTCTTGCCTGCCTGCAAGTCACTGTGTCATCTTCTTCGTAATCGGACCCAAAGGGGGTCTCTCTCGCTCTTTCACACTTGGGTGTTCTGTTCTCACACTCATAATGGCACTCTCTTCTCCTCCTTCTCTTCAACCTCCAACTTCGATACACTCACCTAAGTAAGTTCTTGTGTTTTTTTCTTTTTTTTTTTTTCTTTTCTAAATATATGAATTCGTGATAATTCGTGCCTACATTTCTGGCTATTTAGCTGACTTAATTTGAGGATGTCTGTCTAGACCTCAGGAAAATCTTTGGGAGACTCATTTTCAGGGTTCAGGGTATATATATGATTTACGTGTACCGGGAATTTTCTTAATTGTTCCTTTTTTCACATTCAGAGAGCTTCTTGAAACGCATCGGTTGATTTTGGGGTTGTTGGGGTTGTGTGTCTTCCATTTTGGTCTAATGATGAATTAGTTATATCTATAATTTCTTTGTTGAATTTTTTCAAGTATGTAGCCATTCCACCAAGACGTTGACAACAAACCTTGAAATTTCAATGATTCTATTGCACGTAGTTCAGATTGAATGTTGAGTTCGCTTTTAGATTAAATTTATCTTACTTCGACAATGTGAAATAGGGGAAGAATGACATCTCCATATTGATTAGTTTTGTGGCTTCTCCCTTTGAGAACATACATCCAAGTATAATTGGGGTGGGCCTTAAGGATAAGGTGAAAGAAAATTGTCATACCCCCTCCTGAACTACCTACTAGCTTAGCTCGGATGACGGCATGATGCCGACTGACATCGTTCTCCTCCAACGATACTTGCCGACTCCGCTGAACTCTTGAACCTGATAAACATTCTAATCTTATATATATAATACTTTACGTGCAACACTAAACCTAGATAACCCATAAACATACATTAAGTGCAACCCTGAAATAATTCACTCCTTTAGAAAATAAACATGATAAAAACATTATAACCAAACGCATATCCATCCAGGATTTACACAACCATAACACCTAGAGCTTACACAAACTGTAAATCAATATTGAGTAAGTTGTTTTTTTAATTACTAATGTCTTGTTTGATAACCATTTGGTTTTTATAAATACTGCTTCTACTATTACGTTTCTGCGTTTGTTATGTACTTTCAATTCATGTTTACAAAAACCAAGTCAAGTTCAGAAAACAAAAGGCATCAATCTAGAGAATTGTTTAAAAGAGTGAATTTTTTTTCCGCTGGTCATGATGCCATGAAGGTGTAGATATGGTAGATAGAATTTAGATTAAGTATCATACCAGGGTCCTTAAATCTAGTTTTGTTTTTATGTTGTCTTAACATTGTAGTTGTTGGTAAAAAAATATTCCTCTGTCTGCCCTTTCCAGTTAGGAGGTTTCAGTCCTCTTCTGTTTGAATATGTGTAGAGCTTCTGTTACACTGGCCTTTGGGTTGATTTTTGTGTGTTTGAACCTTTAGCCATCACTAACAATGGCCATCTACACAATATCCTTTCTTTTATGTGACTGGCTCTTTGCATTTAGAGAGTTATCAAGAAATTAGAATTGTGGACATTTCTTGAACATGGAGTGAGTCTATTGGAAAATTTTTCTCACTCGATTGATTTACTGAGTAGAGCTTGTAAGGGATGCCCTTGAATTAATGTTCTCAAGCAAGTAAGCTTATGGAGTGTATAAAGCCAGGCCTTAGATGATGGATAACAATGGTTTGAGCTCCTTGAAGAAAAGTCTTATTACTAGAAAAAAAGAATAAGAAACTATTTCATAAACACATTAGTCAGTTGCCAACATGAGCATAACACTACCTCTAGAAGTTCAAATCCTCATATGCACGTTTGTTGTTCTCGAAAAAGCATCATAGTAGGTTTCATTTTTTCCTAGGACTGGGATGTTCAATATTTATCCAGTTGAGCCACAAATGATTTAAGACTTGTGTTGTATGTTTGATACGAAGGAAAAAAAGATCAATTTTCTTTATCTATACTCCTTTTGTTTCAACATCATTTTCTTTTTTGTATTTAGGGGATGGTTATATATATATATTTACACACGTTCATTGTTTGTGTTGTTGTCTACTGAAACCATTTTCCTCATTGTATCTCAGCAACTTTCGGTCTACATTTTTGGGAGAAAAAAATGGATTCTGTGTTTCTGCAATGCCTGCATGTCATATTGGTCTGTTGAGGAAGACTATAGAATGCAAGGAATCACGAATAGGGAAGCAACCAATTCAAGTGCCATCCAGTGTAACCATCACATTGCAGGGTCAGGATTTGAAAGTTAAGGGTCCTTTAGGAGAACTTTCAATTCTTTATCCACGAGAGGTTAAAATTGAGAGGGAAGATTCTGGGATCATAAGAGTTAAGAAAGCACTGGAGACAAGAAGAGCCAATCAAATGCATGGACTTTTCAGGTATTCTCATCATGGATTTCACTTTTCTTCCTCTTTAAGTTTTACTTGGACGGTATAATATAAAGTTTACCTTCACCTATCAGCTTAAGCTTTTGAGTTATTTGGAGATAGTTTACACGGGTCACTTGCTTTTATGTCTTTTCAAATTCTGAAAATCCAAAGATGACTTCATGTTATGAATGCAAACAACCAGCCCTTTGTTCCTTATGAAATTCAAATGAATTATGGCTGATGGAGAAAGAGTAAATGTGTAGGCATGGTGTCATATATGACCATTTGAATTGATTTCCTCAGGACGCTTACAGACAACATGGTGGTAGGAGTATCGAAGGGGTTCGAAAAGAAACTTCAATTGATCGGTGTCGGTTATCGAGCAATGGTAGAAGGAAAAGACTTGGTACTAAATCTTGGGTTCTCTCATCCAGTTAGAATGGCGATACCTGATGGGATTCAGATAAAAGTGGAAGAAAACACAAGAATTACAGTAAGTGGATATGATAAATGTGCCATTGGTCAGTTTGCTGCCTCTATTAGACAGTGGAGACCCCCAGAACCTTACAAGGGTAAAGGAGTGAAATATGCTGATGAAATCGTAAGAAGAAAAGAAGGAAAAGCAGGGAAGAAGAAGTAATGGCTTTGTAAAATTCATTGTTGGTTTTTTATTCTCTTTTTGAAATATTTGTATTTTTTTTTTCTATTATCAGAAAGGATTATTGTCACATTACTGTTTGACTTCCATTGAATGTGAAAATTTGCTAGAATTCACACCGTAAAATCTTTTACAAAAATGACTTTGTTTTTTTTCTAGGTTGAAAAAGAAAAAAACTGTGAAATTTCTTTCCCCTCCCATCTTCTTAATCTTTATCTCTTGTTTTGATATGGATATTGATGGCATGTGAGTTACATTTACTTTGACATCTAAACATATTTTCGTACATAGAGTATCAATAGTTCGTCGACGAA

mRNA sequence

CCCAATTCAGAATTCTGTCTTCTCCACCTTATCCTTCTCGTCACCTCTTGCCTGCCTGCAAGTCACTGTGTCATCTTCTTCGTAATCGGACCCAAAGGGGGTCTCTCTCGCTCTTTCACACTTGGGTGTTCTGTTCTCACACTCATAATGGCACTCTCTTCTCCTCCTTCTCTTCAACCTCCAACTTCGATACACTCACCTAAGACGCTTACAGACAACATGGTGGTAGGAGTATCGAAGGGGTTCGAAAAGAAACTTCAATTGATCGGTGTCGGTTATCGAGCAATGGTAGAAGGAAAAGACTTGGTACTAAATCTTGGGTTCTCTCATCCAGTTAGAATGGCGATACCTGATGGGATTCAGATAAAAGTGGAAGAAAACACAAGAATTACAGTAAGTGGATATGATAAATGTGCCATTGGTCAGTTTGCTGCCTCTATTAGACAGTGGAGACCCCCAGAACCTTACAAGGGTAAAGGAGTGAAATATGCTGATGAAATCGTAAGAAGAAAAGAAGGAAAAGCAGGGAAGAAGAAGTAATGGCTTTGTAAAATTCATTGTTGGTTTTTTATTCTCTTTTTGAAATATTTGTATTTTTTTTTTCTATTATCAGAAAGGATTATTGTCACATTACTGTTTGACTTCCATTGAATGTGAAAATTTGCTAGAATTCACACCGTAAAATCTTTTACAAAAATGACTTTGTTTTTTTTCTAGGTTGAAAAAGAAAAAAACTGTGAAATTTCTTTCCCCTCCCATCTTCTTAATCTTTATCTCTTGTTTTGATATGGATATTGATGGCATGTGAGTTACATTTACTTTGACATCTAAACATATTTTCGTACATAGAGTATCAATAGTTCGTCGACGAA

Coding sequence (CDS)

ATGGCACTCTCTTCTCCTCCTTCTCTTCAACCTCCAACTTCGATACACTCACCTAAGACGCTTACAGACAACATGGTGGTAGGAGTATCGAAGGGGTTCGAAAAGAAACTTCAATTGATCGGTGTCGGTTATCGAGCAATGGTAGAAGGAAAAGACTTGGTACTAAATCTTGGGTTCTCTCATCCAGTTAGAATGGCGATACCTGATGGGATTCAGATAAAAGTGGAAGAAAACACAAGAATTACAGTAAGTGGATATGATAAATGTGCCATTGGTCAGTTTGCTGCCTCTATTAGACAGTGGAGACCCCCAGAACCTTACAAGGGTAAAGGAGTGAAATATGCTGATGAAATCGTAAGAAGAAAAGAAGGAAAAGCAGGGAAGAAGAAGTAA

Protein sequence

MALSSPPSLQPPTSIHSPKTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK
Homology
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BLAST of CsGy7G003410 vs. NCBI nr
Match: XP_004144493.1 (PREDICTED: 50S ribosomal protein L6, chloroplastic [Cucumis sativus] >KGN43529.1 hypothetical protein Csa_7G044200 [Cucumis sativus])

HSP 1 Score: 224.9 bits (572), Expect = 1.5e-55
Identity = 111/112 (99.11%), Postives = 112/112 (100.00%), Query Frame = 0 

Query: 19  KTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEEN 78
           +TLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEEN
Sbjct: 122 RTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEEN 181

Query: 79  TRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 131
           TRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK
Sbjct: 182 TRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 233

[Close]
BLAST of CsGy7G003410 vs. NCBI nr
Match: XP_008455431.1 (PREDICTED: 50S ribosomal protein L6, chloroplastic [Cucumis melo])

HSP 1 Score: 224.9 bits (572), Expect = 1.5e-55
Identity = 111/112 (99.11%), Postives = 112/112 (100.00%), Query Frame = 0 

Query: 19  KTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEEN 78
           +TLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEEN
Sbjct: 122 RTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEEN 181

Query: 79  TRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 131
           TRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK
Sbjct: 182 TRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 233

[Close]
BLAST of CsGy7G003410 vs. NCBI nr
Match: XP_022930652.1 (50S ribosomal protein L6, chloroplastic isoform X2 [Cucurbita moschata])

HSP 1 Score: 221.9 bits (564), Expect = 1.3e-54
Identity = 106/112 (94.64%), Postives = 112/112 (100.00%), Query Frame = 0 

Query: 19  KTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEEN 78
           +TLTDNMVVGVSKGFEKKLQL+GVGYRAM+EGKDLVLNLGFSHPVRMAIPDG+Q+KVEEN
Sbjct: 115 RTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEEN 174

Query: 79  TRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 131
           TRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADE+VRRKEGKAGKKK
Sbjct: 175 TRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 226

[Close]
BLAST of CsGy7G003410 vs. NCBI nr
Match: XP_022930651.1 (50S ribosomal protein L6, chloroplastic isoform X1 [Cucurbita moschata])

HSP 1 Score: 221.9 bits (564), Expect = 1.3e-54
Identity = 106/112 (94.64%), Postives = 112/112 (100.00%), Query Frame = 0 

Query: 19  KTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEEN 78
           +TLTDNMVVGVSKGFEKKLQL+GVGYRAM+EGKDLVLNLGFSHPVRMAIPDG+Q+KVEEN
Sbjct: 134 RTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEEN 193

Query: 79  TRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 131
           TRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADE+VRRKEGKAGKKK
Sbjct: 194 TRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 245

[Close]
BLAST of CsGy7G003410 vs. NCBI nr
Match: XP_023530191.1 (50S ribosomal protein L6, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 221.9 bits (564), Expect = 1.3e-54
Identity = 106/112 (94.64%), Postives = 112/112 (100.00%), Query Frame = 0 

Query: 19  KTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEEN 78
           +TLTDNMVVGVSKGFEKKLQL+GVGYRAM+EGKDLVLNLGFSHPVRMAIPDG+Q+KVEEN
Sbjct: 115 RTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEEN 174

Query: 79  TRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 131
           TRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADE+VRRKEGKAGKKK
Sbjct: 175 TRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 226

[Close]
BLAST of CsGy7G003410 vs. TAIR10
Match: AT1G05190.1 (Ribosomal protein L6 family)

HSP 1 Score: 198.4 bits (503), Expect = 2.8e-51
Identity = 94/112 (83.93%), Postives = 106/112 (94.64%), Query Frame = 0 

Query: 19  KTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEEN 78
           +TLTDNMVVGVSKGFEKKL L+GVGYRA V+GK+LVLNLGFSHPV+M IPD +++KVEEN
Sbjct: 112 RTLTDNMVVGVSKGFEKKLILVGVGYRATVDGKELVLNLGFSHPVKMQIPDSLKVKVEEN 171

Query: 79  TRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 131
           TRITVSGYDK  IGQFAA++R+WRPPEPYKGKGVKY+DEIVRRKEGKAGKKK
Sbjct: 172 TRITVSGYDKSEIGQFAATVRKWRPPEPYKGKGVKYSDEIVRRKEGKAGKKK 223

[Close]
BLAST of CsGy7G003410 vs. TAIR10
Match: AT2G18400.1 (ribosomal protein L6 family protein)

HSP 1 Score: 97.8 bits (242), Expect = 5.1e-21
Identity = 44/98 (44.90%), Postives = 68/98 (69.39%), Query Frame = 0 

Query: 33  FEKKLQLIGVGYRAMVE--GKDLVLNLGFSHPVRMAIPDGIQIKVEENTRITVSGYDKCA 92
           F + L+++GVGY+A  E  G+ L L LG+SH V +A+P  +++   +N  +  +G DK  
Sbjct: 5   FFRFLKIVGVGYKARAEEAGRFLYLKLGYSHEVELAVPPAVRVFCFKNNVVCCTGIDKQR 64

Query: 93  IGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGK 129
           + QFAA++R  +PPEPYKGKG+ Y DE+V++K+GK  K
Sbjct: 65  VHQFAATVRSCKPPEPYKGKGIMYTDEVVKKKQGKKSK 102

[Close]
BLAST of CsGy7G003410 vs. Swiss-Prot
Match: sp|P82193|RK6_SPIOL (50S ribosomal protein L6, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL6 PE=1 SV=2)

HSP 1 Score: 198.7 bits (504), Expect = 3.9e-50
Identity = 93/112 (83.04%), Postives = 105/112 (93.75%), Query Frame = 0 

Query: 19  KTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEEN 78
           +TLTDNMVVGVSKGFEKKLQL+GVGYRA VEGKDL+L+LGFSHPVRMAIPD +Q+KVEEN
Sbjct: 109 RTLTDNMVVGVSKGFEKKLQLVGVGYRATVEGKDLILSLGFSHPVRMAIPDELQVKVEEN 168

Query: 79  TRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 131
           T++TVSG DK  +GQFAA+IR WRPPEPYKGKGV+Y DE+VRRKEGKAGKKK
Sbjct: 169 TKVTVSGRDKSVVGQFAATIRSWRPPEPYKGKGVRYVDEVVRRKEGKAGKKK 220

[Close]
BLAST of CsGy7G003410 vs. Swiss-Prot
Match: sp|O23049|RK6_ARATH (50S ribosomal protein L6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL6 PE=2 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 5.0e-50
Identity = 94/112 (83.93%), Postives = 106/112 (94.64%), Query Frame = 0 

Query: 19  KTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEEN 78
           +TLTDNMVVGVSKGFEKKL L+GVGYRA V+GK+LVLNLGFSHPV+M IPD +++KVEEN
Sbjct: 112 RTLTDNMVVGVSKGFEKKLILVGVGYRATVDGKELVLNLGFSHPVKMQIPDSLKVKVEEN 171

Query: 79  TRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 131
           TRITVSGYDK  IGQFAA++R+WRPPEPYKGKGVKY+DEIVRRKEGKAGKKK
Sbjct: 172 TRITVSGYDKSEIGQFAATVRKWRPPEPYKGKGVKYSDEIVRRKEGKAGKKK 223

[Close]
BLAST of CsGy7G003410 vs. Swiss-Prot
Match: sp|Q18CH5|RL6_PEPD6 (50S ribosomal protein L6 OS=Peptoclostridium difficile (strain 630) OX=272563 GN=rplF PE=3 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.1e-36
Identity = 73/117 (62.39%), Postives = 88/117 (75.21%), Query Frame = 0 

Query: 14  SIHS-PKTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQ 73
           S+H   +TL DNMVVGV+ GFEKKL+L GVGYRA  +GK LV+NLGFSHPV M  P+GI 
Sbjct: 64  SLHGLTRTLLDNMVVGVNTGFEKKLELKGVGYRAQKQGKKLVMNLGFSHPVEMEDPEGIT 123

Query: 74  IKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKK 130
           ++    T + V G DK  +G +AA IR WR PEPYKGKG+KY DE++RRKEGK GKK
Sbjct: 124 VEAPNQTELIVKGIDKQLVGNYAAKIRAWRKPEPYKGKGIKYVDEVIRRKEGKTGKK 180

[Close]
BLAST of CsGy7G003410 vs. Swiss-Prot
Match: sp|A6TWG7|RL6_ALKMQ (50S ribosomal protein L6 OS=Alkaliphilus metalliredigens (strain QYMF) OX=293826 GN=rplF PE=3 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.2e-35
Identity = 72/116 (62.07%), Postives = 92/116 (79.31%), Query Frame = 0 

Query: 14  SIHS-PKTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQ 73
           S+H   +TL  NMV GV+KG+EKKL+L+GVGYRA ++GK LVL+LGFSHPV +  P+G+ 
Sbjct: 64  SLHGLSRTLVANMVEGVTKGYEKKLELVGVGYRATMQGKKLVLSLGFSHPVEIDQPEGLT 123

Query: 74  IKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGK 129
           I+V   T++TV G DK  +G FAA IR++R PEPYKGKGV+YA E+VRRKEGK GK
Sbjct: 124 IEVPSQTQVTVKGIDKQQVGNFAAKIREYRKPEPYKGKGVRYAGEVVRRKEGKTGK 179

[Close]
BLAST of CsGy7G003410 vs. Swiss-Prot
Match: sp|B0C1E7|RL6_ACAM1 (50S ribosomal protein L6 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 GN=rplF PE=3 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 4.6e-35
Identity = 71/111 (63.96%), Postives = 89/111 (80.18%), Query Frame = 0 

Query: 19  KTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEEN 78
           +TL  NMV GVSKGFEKKLQ+ GVGYRA V+G++L+LN+G+S+PV +  P+G+Q+ VE N
Sbjct: 69  RTLIANMVEGVSKGFEKKLQIQGVGYRAQVQGRNLILNVGYSNPVTIEPPEGVQVAVESN 128

Query: 79  TRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKK 130
           T + VSG +K  +G  AA IR  RPPEPYKGKG++YADE VRRK GKAGKK
Sbjct: 129 TNVIVSGINKEVVGNTAARIRAVRPPEPYKGKGIRYADEYVRRKVGKAGKK 179

[Close]
BLAST of CsGy7G003410 vs. TrEMBL
Match: tr|A0A1S3C0W5|A0A1S3C0W5_CUCME (50S ribosomal protein L6, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495590 PE=3 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 1.0e-55
Identity = 111/112 (99.11%), Postives = 112/112 (100.00%), Query Frame = 0 

Query: 19  KTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEEN 78
           +TLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEEN
Sbjct: 122 RTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEEN 181

Query: 79  TRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 131
           TRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK
Sbjct: 182 TRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 233

[Close]
BLAST of CsGy7G003410 vs. TrEMBL
Match: tr|A0A0A0K3K9|A0A0A0K3K9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G044200 PE=3 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 1.0e-55
Identity = 111/112 (99.11%), Postives = 112/112 (100.00%), Query Frame = 0 

Query: 19  KTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEEN 78
           +TLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEEN
Sbjct: 122 RTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEEN 181

Query: 79  TRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 131
           TRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK
Sbjct: 182 TRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 233

[Close]
BLAST of CsGy7G003410 vs. TrEMBL
Match: tr|A0A200QJK3|A0A200QJK3_9MAGN (Ribosomal protein L6 OS=Macleaya cordata OX=56857 GN=BVC80_8987g44 PE=3 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 1.9e-54
Identity = 107/112 (95.54%), Postives = 112/112 (100.00%), Query Frame = 0 

Query: 19  KTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEEN 78
           +TLTDNMVVGVSKGF+KKLQLIGVGYRAM+EGKDLVLNLGFSHPVRMAIPDGIQ+KVEEN
Sbjct: 115 RTLTDNMVVGVSKGFDKKLQLIGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGIQVKVEEN 174

Query: 79  TRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 131
           TRITVSGYDKCAIGQFAASIR+WRPPEPYKGKGVKYADEIVRRKEGKAGKKK
Sbjct: 175 TRITVSGYDKCAIGQFAASIRKWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 226

[Close]
BLAST of CsGy7G003410 vs. TrEMBL
Match: tr|A0A2P5EEA6|A0A2P5EEA6_9ROSA (Ribosomal protein OS=Trema orientalis OX=63057 GN=TorRG33x02_203970 PE=3 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 2.8e-53
Identity = 104/112 (92.86%), Postives = 111/112 (99.11%), Query Frame = 0 

Query: 19  KTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEEN 78
           +TLTDNMVVGVSKGFEKKLQL+GVGYRAM+EGKDLVLNLGFSHPVRMAIPDGIQ+KVEEN
Sbjct: 115 RTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGIQVKVEEN 174

Query: 79  TRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 131
           TRITVSGYDK AIGQFAASIR+WRPPEPYKGKGVKYADE++RRKEGKAGKKK
Sbjct: 175 TRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYADEVIRRKEGKAGKKK 226

[Close]
BLAST of CsGy7G003410 vs. TrEMBL
Match: tr|A0A1R3HPZ0|A0A1R3HPZ0_9ROSI (Ribosomal protein L6 OS=Corchorus olitorius OX=93759 GN=COLO4_27703 PE=3 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 1.1e-52
Identity = 103/112 (91.96%), Postives = 111/112 (99.11%), Query Frame = 0 

Query: 19  KTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEEN 78
           +TLTDNMVVGVSKGFEK+LQLIGVGYRAM+EGKDLVL+LGFSHPVRMAIP+GIQ+KVEEN
Sbjct: 115 RTLTDNMVVGVSKGFEKRLQLIGVGYRAMLEGKDLVLSLGFSHPVRMAIPEGIQVKVEEN 174

Query: 79  TRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 131
           TRI VSGYDKCAIGQFAASIR+WRPPEPYKGKGVKYADE+VRRKEGKAGKKK
Sbjct: 175 TRIVVSGYDKCAIGQFAASIRKWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 226

The following BLAST results are available for this feature:
BLAST of CsGy7G003410 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004144493.11.5e-5599.11PREDICTED: 50S ribosomal protein L6, chloroplastic [Cucumis sativus] >KGN43529.1... [more]
XP_008455431.11.5e-5599.11PREDICTED: 50S ribosomal protein L6, chloroplastic [Cucumis melo][more]
XP_022930652.11.3e-5494.6450S ribosomal protein L6, chloroplastic isoform X2 [Cucurbita moschata][more]
XP_022930651.11.3e-5494.6450S ribosomal protein L6, chloroplastic isoform X1 [Cucurbita moschata][more]
XP_023530191.11.3e-5494.6450S ribosomal protein L6, chloroplastic [Cucurbita pepo subsp. pepo][more]
BLAST of CsGy7G003410 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G05190.12.8e-5183.93Ribosomal protein L6 family[more]
AT2G18400.15.1e-2144.90ribosomal protein L6 family protein[more]
BLAST of CsGy7G003410 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P82193|RK6_SPIOL3.9e-5083.0450S ribosomal protein L6, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL6 PE=... [more]
sp|O23049|RK6_ARATH5.0e-5083.9350S ribosomal protein L6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL6 ... [more]
sp|Q18CH5|RL6_PEPD61.1e-3662.3950S ribosomal protein L6 OS=Peptoclostridium difficile (strain 630) OX=272563 GN... [more]
sp|A6TWG7|RL6_ALKMQ1.2e-3562.0750S ribosomal protein L6 OS=Alkaliphilus metalliredigens (strain QYMF) OX=293826... [more]
sp|B0C1E7|RL6_ACAM14.6e-3563.9650S ribosomal protein L6 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 G... [more]
BLAST of CsGy7G003410 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3C0W5|A0A1S3C0W5_CUCME1.0e-5599.1150S ribosomal protein L6, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495590 ... [more]
tr|A0A0A0K3K9|A0A0A0K3K9_CUCSA1.0e-5599.11Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G044200 PE=3 SV=1[more]
tr|A0A200QJK3|A0A200QJK3_9MAGN1.9e-5495.54Ribosomal protein L6 OS=Macleaya cordata OX=56857 GN=BVC80_8987g44 PE=3 SV=1[more]
tr|A0A2P5EEA6|A0A2P5EEA6_9ROSA2.8e-5392.86Ribosomal protein OS=Trema orientalis OX=63057 GN=TorRG33x02_203970 PE=3 SV=1[more]
tr|A0A1R3HPZ0|A0A1R3HPZ0_9ROSI1.1e-5291.96Ribosomal protein L6 OS=Corchorus olitorius OX=93759 GN=COLO4_27703 PE=3 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0019843rRNA binding
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR002358Ribosomal_L6_CS
IPR000702Ribosomal_L6
IPR020040Ribosomal_L6_a/b-dom
IPR036789Ribosomal_L6_a/b-dom_sf
IPR019906Ribosomal_L6_bac-type
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
biological_process GO:0042254 ribosome biogenesis
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy7G003410.1CsGy7G003410.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019906Ribosomal protein L6, bacterial-typePRINTSPR00059RIBOSOMALL6coord: 21..46
score: 60.3
coord: 49..65
score: 49.15
coord: 91..112
score: 66.42
IPR019906Ribosomal protein L6, bacterial-typeTIGRFAMTIGR03654TIGR03654coord: 19..126
e-value: 4.8E-51
score: 170.9
IPR019906Ribosomal protein L6, bacterial-typePANTHERPTHR11655:SF1454S RIBOSOMAL PROTEIN L6, MITOCHONDRIALcoord: 19..126
IPR036789Ribosomal protein L6, alpha-beta domain superfamilyGENE3DG3DSA:3.90.930.12coord: 33..130
e-value: 1.3E-42
score: 145.8
IPR036789Ribosomal protein L6, alpha-beta domain superfamilySUPERFAMILYSSF56053Ribosomal protein L6coord: 33..126
IPR020040Ribosomal protein L6, alpha-beta domainPFAMPF00347Ribosomal_L6coord: 40..114
e-value: 2.0E-20
score: 73.2
IPR000702Ribosomal protein L6PANTHERPTHR1165560S/50S RIBOSOMAL PROTEIN L6/L9coord: 19..126
IPR002358Ribosomal protein L6, conserved sitePROSITEPS00525RIBOSOMAL_L6_1coord: 104..112

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy7G003410Cla007673Watermelon (97103) v1cgybwmB558
CsGy7G003410Csa7G044200Cucumber (Chinese Long) v2cgybcuB324
CsGy7G003410MELO3C018813Melon (DHL92) v3.5.1cgybmeB468
CsGy7G003410ClCG02G001880Watermelon (Charleston Gray)cgybwcgB506
CsGy7G003410CSPI07G03780Wild cucumber (PI 183967)cgybcpiB332
CsGy7G003410CmaCh11G018280Cucurbita maxima (Rimu)cgybcmaB896
CsGy7G003410CmaCh19G009270Cucurbita maxima (Rimu)cgybcmaB944
CsGy7G003410CmoCh19G009520Cucurbita moschata (Rifu)cgybcmoB927
CsGy7G003410CmoCh11G019030Cucurbita moschata (Rifu)cgybcmoB877
CsGy7G003410Cp4.1LG04g03410Cucurbita pepo (Zucchini)cgybcpeB964
CsGy7G003410Cp4.1LG15g07620Cucurbita pepo (Zucchini)cgybcpeB910
CsGy7G003410MELO3C018813.2Melon (DHL92) v3.6.1cgybmedB465
CsGy7G003410CsaV3_7G003660Cucumber (Chinese Long) v3cgybcucB348
CsGy7G003410Cla97C02G028300Watermelon (97103) v2cgybwmbB502
CsGy7G003410Bhi05G001170Wax gourdcgybwgoB641
CsGy7G003410Carg19072Silver-seed gourdcarcgybB0717
CsGy7G003410Carg19174Silver-seed gourdcarcgybB0864
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy7G003410Wild cucumber (PI 183967)cgybcpiB299
CsGy7G003410Wild cucumber (PI 183967)cgybcpiB304
CsGy7G003410Wild cucumber (PI 183967)cgybcpiB327
CsGy7G003410Silver-seed gourdcarcgybB0032
CsGy7G003410Silver-seed gourdcarcgybB0354
CsGy7G003410Silver-seed gourdcarcgybB0641
CsGy7G003410Cucumber (Chinese Long) v3cgybcucB316
CsGy7G003410Cucumber (Chinese Long) v3cgybcucB343
CsGy7G003410Watermelon (97103) v2cgybwmbB505
CsGy7G003410Wax gourdcgybwgoB650
CsGy7G003410Wax gourdcgybwgoB658
CsGy7G003410Cucurbita moschata (Rifu)cgybcmoB947
CsGy7G003410Cucumber (Gy14) v2cgybcgybB072
CsGy7G003410Cucumber (Gy14) v2cgybcgybB153
CsGy7G003410Cucurbita maxima (Rimu)cgybcmaB909
CsGy7G003410Cucurbita maxima (Rimu)cgybcmaB953
CsGy7G003410Cucurbita maxima (Rimu)cgybcmaB960
CsGy7G003410Cucurbita moschata (Rifu)cgybcmoB937
CsGy7G003410Cucurbita moschata (Rifu)cgybcmoB943
CsGy7G003410Cucurbita pepo (Zucchini)cgybcpeB919
CsGy7G003410Cucurbita pepo (Zucchini)cgybcpeB973
CsGy7G003410Cucumber (Chinese Long) v2cgybcuB296
CsGy7G003410Cucumber (Chinese Long) v2cgybcuB320
CsGy7G003410Bottle gourd (USVL1VR-Ls)cgyblsiB455
CsGy7G003410Bottle gourd (USVL1VR-Ls)cgyblsiB462
CsGy7G003410Melon (DHL92) v3.5.1cgybmeB452
CsGy7G003410Melon (DHL92) v3.5.1cgybmeB505
CsGy7G003410Melon (DHL92) v3.6.1cgybmedB452
CsGy7G003410Melon (DHL92) v3.6.1cgybmedB501
CsGy7G003410Watermelon (Charleston Gray)cgybwcgB497
CsGy7G003410Watermelon (Charleston Gray)cgybwcgB509
CsGy7G003410Watermelon (97103) v1cgybwmB559