Carg19174 (gene) Silver-seed gourd

Overview
NameCarg19174
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Description50S ribosomal protein L6
LocationCucurbita_argyrosperma_scaffold_099 : 112777 .. 114284 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTAATCCATAGAATTCTTGCGATCGCATTGATGGCTCATGCTATAGTTCCTCAGGATCTCATGCATTTTTGAAATGGAGAGAAAAATAGATATCTAGCACATTTTTTCTACATTGACTGTATGAGTCATAACTGGTATATTGTGAGGAAGACTGATAGAAGTGCAAGGAATCACAGAATTGCTAAGCCAAATCCAATCACCGTGCCCATCTCATGGTAAAACATCACATGGCAAGGGTCAGGATTGAAAGTTAAGGTGTCCTTTGAGACTTCATATTCCTTATCCGACGAGAAGTGAAGATTGAGAGGGAAGATTCTGGGATCCTAAGGGTTAAGAAGGCACTGGAGACAAGAAGAGCCAACCAAATGCATGGCCTTTTCAGGTAAGCTCATCATGGATTTTATTTTATAATCACAGAAACCAATCAGTTTAATCTCAGTTTACTCTTCTAAAACATTTACATTTTGTTTCTCTTCCTCTTAAGTTTTAGTTTACATGGGTTACTTGTTTTTATGTGGCTCTTCAAATTCTGAACCCCAAGATGTTGAATGCAAACAACCAGCAATTGTCCTTCTTTTGAAATCCAGATGAATGGTCCCTGATCGAAAAAGGGTTAACGTAGTTGTGTCATATATGAGTATTTAAATTGATTTCCTCAGGACCCTTACGGACAATATGGTGGTAGGAGTGTCAAAGGGGTTTGAAAAGAAACTTCAATTGGTCGGTGTTGGTTATCGAGCGATGCTAGAAGGAAAAGACTTGGTATTAAATCTTGGGTTCTCTCATCCTGTTAGAATGGCCATTCCGGAAGGACTTCAAGTAAAGGTGGAAGAAAACACCAGAATTACAGTCAGTGGATATGATAAATGTGCCATTGGTCAGTTTGCTGCTTCCATTAGACAATGGAGGCCCCCAGAACCGTATAAGGGTAAGGGAGTGAAATATGCTGATGAAGTTGTTAGAAGAAAGGAGGGGAAGGCAGGGAAGAAGAAGTGATGGTTCATAATGCATTGTTGGTTTTTCTCTGTTTTTGAAACATTTGCTTGTTTCTTTTAGTATCAGAAAGGATTATTGGCAACATACTTTATGATAGTTCTTTTTTTAACCTCCTTCCTCTTCTGGATAATGTTTTGGTTCACTATCATCATTACTTTCCCAGTTCCACCACATTTTTATCAGTTGGGTAAATGGCACTAACTCCAAAAAGATACCAAATAAGGTGAAAGATGGATGACAAGATTCTTGTTTAGATTTAAAGAGCTTTTGTTGTATTTTTTAAGTTTTAGAGAATTGTCTTTGAACTAGTGGCTATTATGGTATTGATGACCACAAAGATATTAGATAGGTTAATGAAAGTTGCATATAAAGCTGGTTTGTTCCTGGATATTTTTTGTGTTTAGATTTGCGTGTTAGAGTCATTCAAGTAGTCTTAATTACGAGTTTTCTTTACTCTTGATCATCAAGGTAATCTGTTTCTAAACTTTCCCTTGGGTTGATTCCTTGTCG

mRNA sequence

TTTTAATCCATAGAATTCTTGCGATCGCATTGATGGCTCATGCTATAGTTCCTCAGGATCTCATGCATTTTTGAAATGGAGAGAAAAATAGATATCTAGCACATTTTTTCTACATTGACTGTATGAGTCATAACTGGTATATTGTGAGGAAGACTGATAGAAGTGCAAGGAATCACAGAATTGCTAAGCCAAATCCAATCACCGTGCCCATCTCATGGTAAAACATCACATGGCAAGGGTCAGGATTGAAAGTTAAGGTGTCCTTTGAGACTTCATATTCCTTATCCGACGAGAAGTGAAGATTGAGAGGGAAGATTCTGGGATCCTAAGGGTTAAGAAGGCACTGGAGACAAGAAGAGCCAACCAAATGCATGGCCTTTTCAGGACCCTTACGGACAATATGGTGGTAGGAGTGTCAAAGGGGTTTGAAAAGAAACTTCAATTGGTCGGTGTTGGTTATCGAGCGATGCTAGAAGGAAAAGACTTGGTATTAAATCTTGGGTTCTCTCATCCTGTTAGAATGGCCATTCCGGAAGGACTTCAAGTAAAGGTGGAAGAAAACACCAGAATTACAGTCAGTGGATATGATAAATGTGCCATTGGTCAGTTTGCTGCTTCCATTAGACAATGGAGGCCCCCAGAACCGTATAAGGGTAAGGGAGTGAAATATGCTGATGAAGTTGTTAGAAGAAAGGAGGGGAAGGCAGGGAAGAAGAAGTGATGGTTCATAATGCATTGTTGGTTTTTCTCTGTTTTTGAAACATTTGCTTGTTTCTTTTAGTATCAGAAAGGATTATTGGCAACATACTTTATGATAGTTCTTTTTTTAACCTCCTTCCTCTTCTGGATAATGTTTTGGTTCACTATCATCATTACTTTCCCAGTTCCACCACATTTTTATCAGTTGGGTAAATGGCACTAACTCCAAAAAGATACCAAATAAGGTGAAAGATGGATGACAAGATTCTTGTTTAGATTTAAAGAGCTTTTGTTGTATTTTTTAAGTTTTAGAGAATTGTCTTTGAACTAGTGGCTATTATGGTATTGATGACCACAAAGATATTAGATAGGTTAATGAAAGTTGCATATAAAGCTGGTTTGTTCCTGGATATTTTTTGTGTTTAGATTTGCGTGTTAGAGTCATTCAAGTAGTCTTAATTACGAGTTTTCTTTACTCTTGATCATCAAGGTAATCTGTTTCTAAACTTTCCCTTGGGTTGATTCCTTGTCG

Coding sequence (CDS)

ATGCATGGCCTTTTCAGGACCCTTACGGACAATATGGTGGTAGGAGTGTCAAAGGGGTTTGAAAAGAAACTTCAATTGGTCGGTGTTGGTTATCGAGCGATGCTAGAAGGAAAAGACTTGGTATTAAATCTTGGGTTCTCTCATCCTGTTAGAATGGCCATTCCGGAAGGACTTCAAGTAAAGGTGGAAGAAAACACCAGAATTACAGTCAGTGGATATGATAAATGTGCCATTGGTCAGTTTGCTGCTTCCATTAGACAATGGAGGCCCCCAGAACCGTATAAGGGTAAGGGAGTGAAATATGCTGATGAAGTTGTTAGAAGAAAGGAGGGGAAGGCAGGGAAGAAGAAGTGA

Protein sequence

MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK
Homology
[Close]
BLAST of Carg19174 vs. NCBI nr
Match: XP_022952947.1 (50S ribosomal protein L6, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 236.5 bits (602), Expect = 4.6e-59
Identity = 116/117 (99.15%), Postives = 117/117 (100.00%), Query Frame = 0 

Query: 1   MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQV 60
           MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQV
Sbjct: 115 MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQV 174

Query: 61  KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 118
           KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADE+VRRKEGKAGKKK
Sbjct: 175 KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 231

[Close]
BLAST of Carg19174 vs. NCBI nr
Match: XP_023554603.1 (50S ribosomal protein L6, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 236.5 bits (602), Expect = 4.6e-59
Identity = 116/117 (99.15%), Postives = 117/117 (100.00%), Query Frame = 0 

Query: 1   MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQV 60
           MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQV
Sbjct: 115 MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQV 174

Query: 61  KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 118
           KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADE+VRRKEGKAGKKK
Sbjct: 175 KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 231

[Close]
BLAST of Carg19174 vs. NCBI nr
Match: XP_022930652.1 (50S ribosomal protein L6, chloroplastic isoform X2 [Cucurbita moschata])

HSP 1 Score: 235.7 bits (600), Expect = 7.8e-59
Identity = 116/117 (99.15%), Postives = 117/117 (100.00%), Query Frame = 0 

Query: 1   MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQV 60
           MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIP+GLQV
Sbjct: 110 MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQV 169

Query: 61  KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 118
           KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK
Sbjct: 170 KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 226

[Close]
BLAST of Carg19174 vs. NCBI nr
Match: XP_022930651.1 (50S ribosomal protein L6, chloroplastic isoform X1 [Cucurbita moschata])

HSP 1 Score: 235.7 bits (600), Expect = 7.8e-59
Identity = 116/117 (99.15%), Postives = 117/117 (100.00%), Query Frame = 0 

Query: 1   MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQV 60
           MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIP+GLQV
Sbjct: 129 MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQV 188

Query: 61  KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 118
           KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK
Sbjct: 189 KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 245

[Close]
BLAST of Carg19174 vs. NCBI nr
Match: XP_023530191.1 (50S ribosomal protein L6, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 235.7 bits (600), Expect = 7.8e-59
Identity = 116/117 (99.15%), Postives = 117/117 (100.00%), Query Frame = 0 

Query: 1   MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQV 60
           MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIP+GLQV
Sbjct: 110 MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQV 169

Query: 61  KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 118
           KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK
Sbjct: 170 KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 226

[Close]
BLAST of Carg19174 vs. TAIR10
Match: AT1G05190.1 (Ribosomal protein L6 family)

HSP 1 Score: 209.1 bits (531), Expect = 1.4e-54
Identity = 100/117 (85.47%), Postives = 111/117 (94.87%), Query Frame = 0 

Query: 1   MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQV 60
           MHGLFRTLTDNMVVGVSKGFEKKL LVGVGYRA ++GK+LVLNLGFSHPV+M IP+ L+V
Sbjct: 107 MHGLFRTLTDNMVVGVSKGFEKKLILVGVGYRATVDGKELVLNLGFSHPVKMQIPDSLKV 166

Query: 61  KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 118
           KVEENTRITVSGYDK  IGQFAA++R+WRPPEPYKGKGVKY+DE+VRRKEGKAGKKK
Sbjct: 167 KVEENTRITVSGYDKSEIGQFAATVRKWRPPEPYKGKGVKYSDEIVRRKEGKAGKKK 223

[Close]
BLAST of Carg19174 vs. TAIR10
Match: AT2G18400.1 (ribosomal protein L6 family protein)

HSP 1 Score: 97.1 bits (240), Expect = 7.9e-21
Identity = 47/98 (47.96%), Postives = 68/98 (69.39%), Query Frame = 0 

Query: 20  FEKKLQLVGVGYRAMLE--GKDLVLNLGFSHPVRMAIPEGLQVKVEENTRITVSGYDKCA 79
           F + L++VGVGY+A  E  G+ L L LG+SH V +A+P  ++V   +N  +  +G DK  
Sbjct: 5   FFRFLKIVGVGYKARAEEAGRFLYLKLGYSHEVELAVPPAVRVFCFKNNVVCCTGIDKQR 64

Query: 80  IGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGK 116
           + QFAA++R  +PPEPYKGKG+ Y DEVV++K+GK  K
Sbjct: 65  VHQFAATVRSCKPPEPYKGKGIMYTDEVVKKKQGKKSK 102

[Close]
BLAST of Carg19174 vs. Swiss-Prot
Match: sp|P82193|RK6_SPIOL (50S ribosomal protein L6, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL6 PE=1 SV=2)

HSP 1 Score: 210.3 bits (534), Expect = 1.2e-53
Identity = 101/117 (86.32%), Postives = 110/117 (94.02%), Query Frame = 0 

Query: 1   MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQV 60
           MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRA +EGKDL+L+LGFSHPVRMAIP+ LQV
Sbjct: 104 MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRATVEGKDLILSLGFSHPVRMAIPDELQV 163

Query: 61  KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 118
           KVEENT++TVSG DK  +GQFAA+IR WRPPEPYKGKGV+Y DEVVRRKEGKAGKKK
Sbjct: 164 KVEENTKVTVSGRDKSVVGQFAATIRSWRPPEPYKGKGVRYVDEVVRRKEGKAGKKK 220

[Close]
BLAST of Carg19174 vs. Swiss-Prot
Match: sp|O23049|RK6_ARATH (50S ribosomal protein L6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL6 PE=2 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 2.6e-53
Identity = 100/117 (85.47%), Postives = 111/117 (94.87%), Query Frame = 0 

Query: 1   MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQV 60
           MHGLFRTLTDNMVVGVSKGFEKKL LVGVGYRA ++GK+LVLNLGFSHPV+M IP+ L+V
Sbjct: 107 MHGLFRTLTDNMVVGVSKGFEKKLILVGVGYRATVDGKELVLNLGFSHPVKMQIPDSLKV 166

Query: 61  KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 118
           KVEENTRITVSGYDK  IGQFAA++R+WRPPEPYKGKGVKY+DE+VRRKEGKAGKKK
Sbjct: 167 KVEENTRITVSGYDKSEIGQFAATVRKWRPPEPYKGKGVKYSDEIVRRKEGKAGKKK 223

[Close]
BLAST of Carg19174 vs. Swiss-Prot
Match: sp|Q18CH5|RL6_PEPD6 (50S ribosomal protein L6 OS=Peptoclostridium difficile (strain 630) OX=272563 GN=rplF PE=3 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.2e-39
Identity = 77/116 (66.38%), Postives = 89/116 (76.72%), Query Frame = 0 

Query: 1   MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQV 60
           +HGL RTL DNMVVGV+ GFEKKL+L GVGYRA  +GK LV+NLGFSHPV M  PEG+ V
Sbjct: 65  LHGLTRTLLDNMVVGVNTGFEKKLELKGVGYRAQKQGKKLVMNLGFSHPVEMEDPEGITV 124

Query: 61  KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKK 117
           +    T + V G DK  +G +AA IR WR PEPYKGKG+KY DEV+RRKEGK GKK
Sbjct: 125 EAPNQTELIVKGIDKQLVGNYAAKIRAWRKPEPYKGKGIKYVDEVIRRKEGKTGKK 180

[Close]
BLAST of Carg19174 vs. Swiss-Prot
Match: sp|A6TWG7|RL6_ALKMQ (50S ribosomal protein L6 OS=Alkaliphilus metalliredigens (strain QYMF) OX=293826 GN=rplF PE=3 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 8.0e-39
Identity = 77/115 (66.96%), Postives = 93/115 (80.87%), Query Frame = 0 

Query: 1   MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQV 60
           +HGL RTL  NMV GV+KG+EKKL+LVGVGYRA ++GK LVL+LGFSHPV +  PEGL +
Sbjct: 65  LHGLSRTLVANMVEGVTKGYEKKLELVGVGYRATMQGKKLVLSLGFSHPVEIDQPEGLTI 124

Query: 61  KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGK 116
           +V   T++TV G DK  +G FAA IR++R PEPYKGKGV+YA EVVRRKEGK GK
Sbjct: 125 EVPSQTQVTVKGIDKQQVGNFAAKIREYRKPEPYKGKGVRYAGEVVRRKEGKTGK 179

[Close]
BLAST of Carg19174 vs. Swiss-Prot
Match: sp|A0PXW1|RL6_CLONN (50S ribosomal protein L6 OS=Clostridium novyi (strain NT) OX=386415 GN=rplF PE=3 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 6.8e-38
Identity = 74/115 (64.35%), Postives = 92/115 (80.00%), Query Frame = 0 

Query: 1   MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQV 60
           +HGL R L +NMVVGV++G+EK L+LVGVGYRA L+GKDL LNLG+SHPV +   +G++ 
Sbjct: 65  LHGLTRALINNMVVGVTQGYEKTLELVGVGYRAQLKGKDLTLNLGYSHPVEIKAVKGVEY 124

Query: 61  KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGK 116
           KV E T++ VSG DK  +G  AA+IR WR PEPYKGKG+KYA EV+RRKEGK GK
Sbjct: 125 KVPEPTKVVVSGIDKELVGSVAANIRVWRKPEPYKGKGIKYAGEVIRRKEGKTGK 179

[Close]
BLAST of Carg19174 vs. TrEMBL
Match: tr|A0A1S3C0W5|A0A1S3C0W5_CUCME (50S ribosomal protein L6, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495590 PE=3 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 4.4e-58
Identity = 111/117 (94.87%), Postives = 117/117 (100.00%), Query Frame = 0 

Query: 1   MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQV 60
           MHGLFRTLTDNMVVGVSKGFEKKLQL+GVGYRAM+EGKDLVLNLGFSHPVRMAIP+G+Q+
Sbjct: 117 MHGLFRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQI 176

Query: 61  KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 118
           KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADE+VRRKEGKAGKKK
Sbjct: 177 KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 233

[Close]
BLAST of Carg19174 vs. TrEMBL
Match: tr|A0A0A0K3K9|A0A0A0K3K9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G044200 PE=3 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 4.4e-58
Identity = 111/117 (94.87%), Postives = 117/117 (100.00%), Query Frame = 0 

Query: 1   MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQV 60
           MHGLFRTLTDNMVVGVSKGFEKKLQL+GVGYRAM+EGKDLVLNLGFSHPVRMAIP+G+Q+
Sbjct: 117 MHGLFRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQI 176

Query: 61  KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 118
           KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADE+VRRKEGKAGKKK
Sbjct: 177 KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 233

[Close]
BLAST of Carg19174 vs. TrEMBL
Match: tr|A0A200QJK3|A0A200QJK3_9MAGN (Ribosomal protein L6 OS=Macleaya cordata OX=56857 GN=BVC80_8987g44 PE=3 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 9.8e-58
Identity = 111/117 (94.87%), Postives = 117/117 (100.00%), Query Frame = 0 

Query: 1   MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQV 60
           MHGLFRTLTDNMVVGVSKGF+KKLQL+GVGYRAMLEGKDLVLNLGFSHPVRMAIP+G+QV
Sbjct: 110 MHGLFRTLTDNMVVGVSKGFDKKLQLIGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGIQV 169

Query: 61  KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 118
           KVEENTRITVSGYDKCAIGQFAASIR+WRPPEPYKGKGVKYADE+VRRKEGKAGKKK
Sbjct: 170 KVEENTRITVSGYDKCAIGQFAASIRKWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 226

[Close]
BLAST of Carg19174 vs. TrEMBL
Match: tr|A0A2P5EEA6|A0A2P5EEA6_9ROSA (Ribosomal protein OS=Trema orientalis OX=63057 GN=TorRG33x02_203970 PE=3 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 4.9e-57
Identity = 112/117 (95.73%), Postives = 116/117 (99.15%), Query Frame = 0 

Query: 1   MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQV 60
           MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIP+G+QV
Sbjct: 110 MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGIQV 169

Query: 61  KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 118
           KVEENTRITVSGYDK AIGQFAASIR+WRPPEPYKGKGVKYADEV+RRKEGKAGKKK
Sbjct: 170 KVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYADEVIRRKEGKAGKKK 226

[Close]
BLAST of Carg19174 vs. TrEMBL
Match: tr|A0A1R3HPZ0|A0A1R3HPZ0_9ROSI (Ribosomal protein L6 OS=Corchorus olitorius OX=93759 GN=COLO4_27703 PE=3 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 4.9e-57
Identity = 111/117 (94.87%), Postives = 116/117 (99.15%), Query Frame = 0 

Query: 1   MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQV 60
           MHGLFRTLTDNMVVGVSKGFEK+LQL+GVGYRAMLEGKDLVL+LGFSHPVRMAIPEG+QV
Sbjct: 110 MHGLFRTLTDNMVVGVSKGFEKRLQLIGVGYRAMLEGKDLVLSLGFSHPVRMAIPEGIQV 169

Query: 61  KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 118
           KVEENTRI VSGYDKCAIGQFAASIR+WRPPEPYKGKGVKYADEVVRRKEGKAGKKK
Sbjct: 170 KVEENTRIVVSGYDKCAIGQFAASIRKWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 226

The following BLAST results are available for this feature:
BLAST of Carg19174 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022952947.14.6e-5999.1550S ribosomal protein L6, chloroplastic-like [Cucurbita moschata][more]
XP_023554603.14.6e-5999.1550S ribosomal protein L6, chloroplastic-like [Cucurbita pepo subsp. pepo][more]
XP_022930652.17.8e-5999.1550S ribosomal protein L6, chloroplastic isoform X2 [Cucurbita moschata][more]
XP_022930651.17.8e-5999.1550S ribosomal protein L6, chloroplastic isoform X1 [Cucurbita moschata][more]
XP_023530191.17.8e-5999.1550S ribosomal protein L6, chloroplastic [Cucurbita pepo subsp. pepo][more]
BLAST of Carg19174 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G05190.11.4e-5485.47Ribosomal protein L6 family[more]
AT2G18400.17.9e-2147.96ribosomal protein L6 family protein[more]
BLAST of Carg19174 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P82193|RK6_SPIOL1.2e-5386.3250S ribosomal protein L6, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL6 PE=... [more]
sp|O23049|RK6_ARATH2.6e-5385.4750S ribosomal protein L6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL6 ... [more]
sp|Q18CH5|RL6_PEPD61.2e-3966.3850S ribosomal protein L6 OS=Peptoclostridium difficile (strain 630) OX=272563 GN... [more]
sp|A6TWG7|RL6_ALKMQ8.0e-3966.9650S ribosomal protein L6 OS=Alkaliphilus metalliredigens (strain QYMF) OX=293826... [more]
sp|A0PXW1|RL6_CLONN6.8e-3864.3550S ribosomal protein L6 OS=Clostridium novyi (strain NT) OX=386415 GN=rplF PE=3... [more]
BLAST of Carg19174 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3C0W5|A0A1S3C0W5_CUCME4.4e-5894.8750S ribosomal protein L6, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495590 ... [more]
tr|A0A0A0K3K9|A0A0A0K3K9_CUCSA4.4e-5894.87Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G044200 PE=3 SV=1[more]
tr|A0A200QJK3|A0A200QJK3_9MAGN9.8e-5894.87Ribosomal protein L6 OS=Macleaya cordata OX=56857 GN=BVC80_8987g44 PE=3 SV=1[more]
tr|A0A2P5EEA6|A0A2P5EEA6_9ROSA4.9e-5795.73Ribosomal protein OS=Trema orientalis OX=63057 GN=TorRG33x02_203970 PE=3 SV=1[more]
tr|A0A1R3HPZ0|A0A1R3HPZ0_9ROSI4.9e-5794.87Ribosomal protein L6 OS=Corchorus olitorius OX=93759 GN=COLO4_27703 PE=3 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0019843rRNA binding
Vocabulary: INTERPRO
TermDefinition
IPR002358Ribosomal_L6_CS
IPR000702Ribosomal_L6
IPR020040Ribosomal_L6_a/b-dom
IPR036789Ribosomal_L6_a/b-dom_sf
IPR019906Ribosomal_L6_bac-type
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg19174-RACarg19174-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019906Ribosomal protein L6, bacterial-typePRINTSPR00059RIBOSOMALL6coord: 8..33
score: 61.66
coord: 36..52
score: 49.15
coord: 78..99
score: 66.42
IPR019906Ribosomal protein L6, bacterial-typeTIGRFAMTIGR03654TIGR03654coord: 1..113
e-value: 5.0E-54
score: 180.6
IPR019906Ribosomal protein L6, bacterial-typePANTHERPTHR11655:SF1454S RIBOSOMAL PROTEIN L6, MITOCHONDRIALcoord: 1..113
IPR036789Ribosomal protein L6, alpha-beta domain superfamilyGENE3DG3DSA:3.90.930.12coord: 20..117
e-value: 6.5E-43
score: 146.8
IPR036789Ribosomal protein L6, alpha-beta domain superfamilySUPERFAMILYSSF56053Ribosomal protein L6coord: 20..113
IPR020040Ribosomal protein L6, alpha-beta domainPFAMPF00347Ribosomal_L6coord: 27..101
e-value: 5.6E-20
score: 71.7
IPR000702Ribosomal protein L6PANTHERPTHR1165560S/50S RIBOSOMAL PROTEIN L6/L9coord: 1..113
IPR002358Ribosomal protein L6, conserved sitePROSITEPS00525RIBOSOMAL_L6_1coord: 91..99

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg19174Cla007673Watermelon (97103) v1carwmB0880
Carg19174Csa7G044200Cucumber (Chinese Long) v2carcuB0891
Carg19174MELO3C018813Melon (DHL92) v3.5.1carmeB0865
Carg19174ClCG02G001880Watermelon (Charleston Gray)carwcgB0851
Carg19174CSPI07G03780Wild cucumber (PI 183967)carcpiB0911
Carg19174Cucsa.148470Cucumber (Gy14) v1carcgyB0997
Carg19174CmaCh19G009270Cucurbita maxima (Rimu)carcmaB1214
Carg19174CmaCh11G018280Cucurbita maxima (Rimu)carcmaB1211
Carg19174CmoCh19G009520Cucurbita moschata (Rifu)carcmoB1183
Carg19174CmoCh11G019030Cucurbita moschata (Rifu)carcmoB1179
Carg19174Cp4.1LG15g07620Cucurbita pepo (Zucchini)carcpeB1220
Carg19174Cp4.1LG04g03410Cucurbita pepo (Zucchini)carcpeB1223
Carg19174CsGy7G003410Cucumber (Gy14) v2carcgybB0864
Carg19174MELO3C018813.2Melon (DHL92) v3.6.1carmedB0874
Carg19174CsaV3_7G003660Cucumber (Chinese Long) v3carcucB0915
Carg19174Cla97C02G028300Watermelon (97103) v2carwmbB0915
Carg19174Bhi05G001170Wax gourdcarwgoB1022
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg19174Carg19072Silver-seed gourdcarcarB590
The following block(s) are covering this gene:
GeneOrganismBlock
Carg19174Cucurbita pepo (Zucchini)carcpeB1219
Carg19174Silver-seed gourdcarcarB036
Carg19174Silver-seed gourdcarcarB364
Carg19174Silver-seed gourdcarcarB562
Carg19174Silver-seed gourdcarcarB637
Carg19174Cucumber (Gy14) v2carcgybB0862
Carg19174Cucumber (Gy14) v2carcgybB0863
Carg19174Cucumber (Gy14) v1carcgyB0995
Carg19174Cucumber (Gy14) v1carcgyB0996
Carg19174Cucurbita maxima (Rimu)carcmaB1213
Carg19174Cucurbita maxima (Rimu)carcmaB1215
Carg19174Cucurbita maxima (Rimu)carcmaB1216
Carg19174Cucurbita maxima (Rimu)carcmaB1217
Carg19174Cucurbita maxima (Rimu)carcmaB1218
Carg19174Cucurbita moschata (Rifu)carcmoB1181
Carg19174Cucurbita moschata (Rifu)carcmoB1182
Carg19174Cucurbita moschata (Rifu)carcmoB1184
Carg19174Cucurbita moschata (Rifu)carcmoB1185
Carg19174Cucurbita moschata (Rifu)carcmoB1186
Carg19174Cucurbita moschata (Rifu)carcmoB1187
Carg19174Cucurbita pepo (Zucchini)carcpeB1218
Carg19174Cucurbita pepo (Zucchini)carcpeB1221
Carg19174Cucurbita pepo (Zucchini)carcpeB1222
Carg19174Cucurbita pepo (Zucchini)carcpeB1225
Carg19174Wild cucumber (PI 183967)carcpiB0908
Carg19174Wild cucumber (PI 183967)carcpiB0909
Carg19174Wild cucumber (PI 183967)carcpiB0910
Carg19174Cucumber (Chinese Long) v2carcuB0889
Carg19174Cucumber (Chinese Long) v2carcuB0890
Carg19174Cucumber (Chinese Long) v3carcucB0913
Carg19174Cucumber (Chinese Long) v3carcucB0914
Carg19174Bottle gourd (USVL1VR-Ls)carlsiB793
Carg19174Bottle gourd (USVL1VR-Ls)carlsiB795
Carg19174Bottle gourd (USVL1VR-Ls)carlsiB797
Carg19174Melon (DHL92) v3.5.1carmeB0863
Carg19174Melon (DHL92) v3.5.1carmeB0866
Carg19174Melon (DHL92) v3.6.1carmedB0875
Carg19174Watermelon (Charleston Gray)carwcgB0849
Carg19174Watermelon (Charleston Gray)carwcgB0852
Carg19174Watermelon (Charleston Gray)carwcgB0853
Carg19174Watermelon (97103) v1carwmB0876
Carg19174Watermelon (97103) v1carwmB0879
Carg19174Watermelon (97103) v1carwmB0881
Carg19174Watermelon (97103) v2carwmbB0912
Carg19174Watermelon (97103) v2carwmbB0916
Carg19174Wax gourdcarwgoB1024
Carg19174Wax gourdcarwgoB1026