CsGy6G028340 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy6G028340
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	protein SHORT-ROOT
Location	Chr6 : 27271799 .. 27273271 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATACCTTGTTTCGGCTTGTTAATCTTCAATCTGATCAACAATCTTACAATTCCAGTAGGAGTACTAATTCAAGCAGTTCTAGATCTTCTAGACAAAACCAATACCATCATTACCATCAACAAGAAGACGAAGAATGCTACAATCTTCTCATGGATGACGAAGATTTCTCATCGTCTAGTAATTCTAGACAATATTATAATAGTAATCCATACCATCCTCCTCACCCATCCTCTACCACCACCCCAACTCCTCCGCTCGATCAATTCTCATTCCTTTCACCTTCACCGGATTTCAACTTCGAATTTTCCGGCAGGTGGGCCCCTGATATTCTCCTTGAAACTGCCAGGGCTATTTCTGACAGGAACAGCGCTCGCGTTCAGCAACTCATGTGGATGCTAAACGAACTCAGCTCTCCCTATGGAGATACGGATCAAAAGCTAGCTGCCTATTTTCTGCAAGCCTTGTTTAGCCGTATGACTGATTCCGGCGACCGTAATTACCGCGCTTTGGCATCTGCTTCTGAGAAAACGTGCTCATTCGAATCCACTAGGAAAGTGATGCTCAAGTTTCAGGAGGTTAGCCCTTGGACCACTTTTGGCCATGTTTCTTGCAATGGCGCATTAATTGAAGCTTTAGAAGGCGAATCGAAGCTACATATAGTCGATATTAGCAATACATATTGTACGCAGTGGCCTACTTTGCTTGAAGCTCTAGCTACTCGCACCGACGATACGCCACACCTCCGTCTCACGACGGTGGTTACTACCAAGCCGAGCGGTGGGACCGGAGCTGCGGCTTCCCAGAAAGTAATGAAGGAAATTGGTACAAGAATGGAAAAGTTCGCTAGGCTTATGGGCGTACCTTTTAAATTCAATGCGCTTTACCATTCCGGTGATCTTTCGGAATTGGACATGGCGAAATTAGATATTAAAGAAGACGAGGCACTTGCGATTAACTGCGTCGGAGCTTTACGTTCCGTGGCGGCGATTAACAACCGTCGAGATTTCTTGATTTCGTCTTTTCGTAGTTTACGGCCGCGGATCATCACGGTGATTGAAGAGGAAGCGGATCTCGACGTTGGCGTTGATGGAATTGAATTTATGAGAGGGTTTCAAGAATGTTTGCGGTGGTTTAGGGTTTACTTCGAGACATTGGACGAGAGTTTCTCAAGGACGAGTAATGAGCGATTGATGCTGGAGAGAGCAGCCGGTAGGGCAATCGTCGACCTAGTGGCTTGTTCGGCGGCGGAATCAGTTGAGAGGCGGGAAACAGCGTCGCGGTGGGCTCAGCGGCTGCATGGAAATGGATTTGGTCCAGTGACGTTCAGCGACGAAGTGTGCGACGACGTTAGGGCGTTGTTGAGGAGATACAAGGAAGGATGGGCAATGACACAGAGCTCGGACGTCGCCGGAATATTCTTGACGTGGAAAGAGCAGCCGGTGGTGTGGGCCAGTGCATGGAGACCTTGA

mRNA sequence

ATGGATACCTTGTTTCGGCTTGTTAATCTTCAATCTGATCAACAATCTTACAATTCCAGTAGGAGTACTAATTCAAGCAGTTCTAGATCTTCTAGACAAAACCAATACCATCATTACCATCAACAAGAAGACGAAGAATGCTACAATCTTCTCATGGATGACGAAGATTTCTCATCGTCTAGTAATTCTAGACAATATTATAATAGTAATCCATACCATCCTCCTCACCCATCCTCTACCACCACCCCAACTCCTCCGCTCGATCAATTCTCATTCCTTTCACCTTCACCGGATTTCAACTTCGAATTTTCCGGCAGGTGGGCCCCTGATATTCTCCTTGAAACTGCCAGGGCTATTTCTGACAGGAACAGCGCTCGCGTTCAGCAACTCATGTGGATGCTAAACGAACTCAGCTCTCCCTATGGAGATACGGATCAAAAGCTAGCTGCCTATTTTCTGCAAGCCTTGTTTAGCCGTATGACTGATTCCGGCGACCGTAATTACCGCGCTTTGGCATCTGCTTCTGAGAAAACGTGCTCATTCGAATCCACTAGGAAAGTGATGCTCAAGTTTCAGGAGGTTAGCCCTTGGACCACTTTTGGCCATGTTTCTTGCAATGGCGCATTAATTGAAGCTTTAGAAGGCGAATCGAAGCTACATATAGTCGATATTAGCAATACATATTGTACGCAGTGGCCTACTTTGCTTGAAGCTCTAGCTACTCGCACCGACGATACGCCACACCTCCGTCTCACGACGGTGGTTACTACCAAGCCGAGCGGTGGGACCGGAGCTGCGGCTTCCCAGAAAGTAATGAAGGAAATTGGTACAAGAATGGAAAAGTTCGCTAGGCTTATGGGCGTACCTTTTAAATTCAATGCGCTTTACCATTCCGGTGATCTTTCGGAATTGGACATGGCGAAATTAGATATTAAAGAAGACGAGGCACTTGCGATTAACTGCGTCGGAGCTTTACGTTCCGTGGCGGCGATTAACAACCGTCGAGATTTCTTGATTTCGTCTTTTCGTAGTTTACGGCCGCGGATCATCACGGTGATTGAAGAGGAAGCGGATCTCGACGTTGGCGTTGATGGAATTGAATTTATGAGAGGGTTTCAAGAATGTTTGCGGTGGTTTAGGGTTTACTTCGAGACATTGGACGAGAGTTTCTCAAGGACGAGTAATGAGCGATTGATGCTGGAGAGAGCAGCCGGTAGGGCAATCGTCGACCTAGTGGCTTGTTCGGCGGCGGAATCAGTTGAGAGGCGGGAAACAGCGTCGCGGTGGGCTCAGCGGCTGCATGGAAATGGATTTGGTCCAGTGACGTTCAGCGACGAAGTGTGCGACGACGTTAGGGCGTTGTTGAGGAGATACAAGGAAGGATGGGCAATGACACAGAGCTCGGACGTCGCCGGAATATTCTTGACGTGGAAAGAGCAGCCGGTGGTGTGGGCCAGTGCATGGAGACCTTGA

Coding sequence (CDS)

ATGGATACCTTGTTTCGGCTTGTTAATCTTCAATCTGATCAACAATCTTACAATTCCAGTAGGAGTACTAATTCAAGCAGTTCTAGATCTTCTAGACAAAACCAATACCATCATTACCATCAACAAGAAGACGAAGAATGCTACAATCTTCTCATGGATGACGAAGATTTCTCATCGTCTAGTAATTCTAGACAATATTATAATAGTAATCCATACCATCCTCCTCACCCATCCTCTACCACCACCCCAACTCCTCCGCTCGATCAATTCTCATTCCTTTCACCTTCACCGGATTTCAACTTCGAATTTTCCGGCAGGTGGGCCCCTGATATTCTCCTTGAAACTGCCAGGGCTATTTCTGACAGGAACAGCGCTCGCGTTCAGCAACTCATGTGGATGCTAAACGAACTCAGCTCTCCCTATGGAGATACGGATCAAAAGCTAGCTGCCTATTTTCTGCAAGCCTTGTTTAGCCGTATGACTGATTCCGGCGACCGTAATTACCGCGCTTTGGCATCTGCTTCTGAGAAAACGTGCTCATTCGAATCCACTAGGAAAGTGATGCTCAAGTTTCAGGAGGTTAGCCCTTGGACCACTTTTGGCCATGTTTCTTGCAATGGCGCATTAATTGAAGCTTTAGAAGGCGAATCGAAGCTACATATAGTCGATATTAGCAATACATATTGTACGCAGTGGCCTACTTTGCTTGAAGCTCTAGCTACTCGCACCGACGATACGCCACACCTCCGTCTCACGACGGTGGTTACTACCAAGCCGAGCGGTGGGACCGGAGCTGCGGCTTCCCAGAAAGTAATGAAGGAAATTGGTACAAGAATGGAAAAGTTCGCTAGGCTTATGGGCGTACCTTTTAAATTCAATGCGCTTTACCATTCCGGTGATCTTTCGGAATTGGACATGGCGAAATTAGATATTAAAGAAGACGAGGCACTTGCGATTAACTGCGTCGGAGCTTTACGTTCCGTGGCGGCGATTAACAACCGTCGAGATTTCTTGATTTCGTCTTTTCGTAGTTTACGGCCGCGGATCATCACGGTGATTGAAGAGGAAGCGGATCTCGACGTTGGCGTTGATGGAATTGAATTTATGAGAGGGTTTCAAGAATGTTTGCGGTGGTTTAGGGTTTACTTCGAGACATTGGACGAGAGTTTCTCAAGGACGAGTAATGAGCGATTGATGCTGGAGAGAGCAGCCGGTAGGGCAATCGTCGACCTAGTGGCTTGTTCGGCGGCGGAATCAGTTGAGAGGCGGGAAACAGCGTCGCGGTGGGCTCAGCGGCTGCATGGAAATGGATTTGGTCCAGTGACGTTCAGCGACGAAGTGTGCGACGACGTTAGGGCGTTGTTGAGGAGATACAAGGAAGGATGGGCAATGACACAGAGCTCGGACGTCGCCGGAATATTCTTGACGTGGAAAGAGCAGCCGGTGGTGTGGGCCAGTGCATGGAGACCTTGA

Protein sequence

MDTLFRLVNLQSDQQSYNSSRSTNSSSSRSSRQNQYHHYHQQEDEECYNLLMDDEDFSSSSNSRQYYNSNPYHPPHPSSTTTPTPPLDQFSFLSPSPDFNFEFSGRWAPDILLETARAISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFSRMTDSGDRNYRALASASEKTCSFESTRKVMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTTKPSGGTGAAASQKVMKEIGTRMEKFARLMGVPFKFNALYHSGDLSELDMAKLDIKEDEALAINCVGALRSVAAINNRRDFLISSFRSLRPRIITVIEEEADLDVGVDGIEFMRGFQECLRWFRVYFETLDESFSRTSNERLMLERAAGRAIVDLVACSAAESVERRETASRWAQRLHGNGFGPVTFSDEVCDDVRALLRRYKEGWAMTQSSDVAGIFLTWKEQPVVWASAWRP

Homology

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BLAST of CsGy6G028340 vs. NCBI nr
Match: XP_004141867.1 (PREDICTED: protein SHORT-ROOT-like [Cucumis sativus] >KGN48608.1 hypothetical protein Csa_6G495620 [Cucumis sativus])

HSP 1 Score: 815.5 bits (2105), Expect = 1.0e-232
Identity = 490/490 (100.00%), Postives = 490/490 (100.00%), Query Frame = 0


Query: 1   MDTLFRLVNLQSDQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MDTLFRLVNLQSDQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MDTLFRLVNLQSDQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXLDQFSFLSPSPDFNFEFSGRWAPDILLETARAIS 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXLDQFSFLSPSPDFNFEFSGRWAPDILLETARAIS
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXLDQFSFLSPSPDFNFEFSGRWAPDILLETARAIS 120

Query: 121 DRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFSRMTDSGDRNYRALASASEKTCS 180
           DRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFSRMTDSGDRNYRALASASEKTCS
Sbjct: 121 DRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFSRMTDSGDRNYRALASASEKTCS 180

Query: 181 FESTRKVMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIVDISNTYCTQWPTLLEALA 240
           FESTRKVMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIVDISNTYCTQWPTLLEALA
Sbjct: 181 FESTRKVMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIVDISNTYCTQWPTLLEALA 240

Query: 241 TRTDDTPHLRLTTVVTTKPSGGTGAAASQKVMKEIGTRMEKFARLMGVPFKFNALYHSGD 300
           TRTDDTPHLRLTTVVTTKPSGGTGAAASQKVMKEIGTRMEKFARLMGVPFKFNALYHSGD
Sbjct: 241 TRTDDTPHLRLTTVVTTKPSGGTGAAASQKVMKEIGTRMEKFARLMGVPFKFNALYHSGD 300

Query: 301 LSELDMAKLDIKEDEALAINCVGALRSVAAINNRRDFLISSFRSLRPRIITVIEEEADLD 360
           LSELDMAKLDIKEDEALAINCVGALRSVAAINNRRDFLISSFRSLRPRIITVIEEEADLD
Sbjct: 301 LSELDMAKLDIKEDEALAINCVGALRSVAAINNRRDFLISSFRSLRPRIITVIEEEADLD 360

Query: 361 VGVDGIEFMRGFQECLRWFRVYFETLDESFSRTSNERLMLERAAGRAIVDLVACSAAESV 420
           VGVDGIEFMRGFQECLRWFRVYFETLDESFSRTSNERLMLERAAGRAIVDLVACSAAESV
Sbjct: 361 VGVDGIEFMRGFQECLRWFRVYFETLDESFSRTSNERLMLERAAGRAIVDLVACSAAESV 420

Query: 421 ERRETASRWAQRLHGNGFGPVTFSDEVCDDVRALLRRYKEGWAMTQSSDVAGIFLTWKEQ 480
           ERRETASRWAQRLHGNGFGPVTFSDEVCDDVRALLRRYKEGWAMTQSSDVAGIFLTWKEQ
Sbjct: 421 ERRETASRWAQRLHGNGFGPVTFSDEVCDDVRALLRRYKEGWAMTQSSDVAGIFLTWKEQ 480

Query: 481 PVVWASAWRP 491
           PVVWASAWRP
Sbjct: 481 PVVWASAWRP 490

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BLAST of CsGy6G028340 vs. NCBI nr
Match: XP_008440387.1 (PREDICTED: protein SHORT-ROOT [Cucumis melo])

HSP 1 Score: 813.5 bits (2100), Expect = 3.8e-232
Identity = 488/490 (99.59%), Postives = 489/490 (99.80%), Query Frame = 0


Query: 1   MDTLFRLVNLQSDQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MDTLFRLVNLQSDQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MDTLFRLVNLQSDQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXLDQFSFLSPSPDFNFEFSGRWAPDILLETARAIS 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXLDQFSFLSPSPDFNFEFSGRWAPDILLETARAIS
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXLDQFSFLSPSPDFNFEFSGRWAPDILLETARAIS 120

Query: 121 DRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFSRMTDSGDRNYRALASASEKTCS 180
           DRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFSRMTDSGDRNYRALASASEKTCS
Sbjct: 121 DRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFSRMTDSGDRNYRALASASEKTCS 180

Query: 181 FESTRKVMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIVDISNTYCTQWPTLLEALA 240
           FESTRKVMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHI+DISNTYCTQWPTLLEALA
Sbjct: 181 FESTRKVMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDISNTYCTQWPTLLEALA 240

Query: 241 TRTDDTPHLRLTTVVTTKPSGGTGAAASQKVMKEIGTRMEKFARLMGVPFKFNALYHSGD 300
           TRTDDTPHLRLTTVVTTKPSGGTG AASQKVMKEIGTRMEKFARLMGVPFKFNALYHSGD
Sbjct: 241 TRTDDTPHLRLTTVVTTKPSGGTGTAASQKVMKEIGTRMEKFARLMGVPFKFNALYHSGD 300

Query: 301 LSELDMAKLDIKEDEALAINCVGALRSVAAINNRRDFLISSFRSLRPRIITVIEEEADLD 360
           LSELDMAKLDIKEDEALAINCVGALRSVAAINNRRDFLISSFRSLRPRIITVIEEEADLD
Sbjct: 301 LSELDMAKLDIKEDEALAINCVGALRSVAAINNRRDFLISSFRSLRPRIITVIEEEADLD 360

Query: 361 VGVDGIEFMRGFQECLRWFRVYFETLDESFSRTSNERLMLERAAGRAIVDLVACSAAESV 420
           VGVDGIEFMRGFQECLRWFRVYFETLDESFSRTSNERLMLERAAGRAIVDLVACSAAESV
Sbjct: 361 VGVDGIEFMRGFQECLRWFRVYFETLDESFSRTSNERLMLERAAGRAIVDLVACSAAESV 420

Query: 421 ERRETASRWAQRLHGNGFGPVTFSDEVCDDVRALLRRYKEGWAMTQSSDVAGIFLTWKEQ 480
           ERRETASRWAQRLHGNGFGPVTFSDEVCDDVRALLRRYKEGWAMTQSSDVAGIFLTWKEQ
Sbjct: 421 ERRETASRWAQRLHGNGFGPVTFSDEVCDDVRALLRRYKEGWAMTQSSDVAGIFLTWKEQ 480

Query: 481 PVVWASAWRP 491
           PVVWASAWRP
Sbjct: 481 PVVWASAWRP 490

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BLAST of CsGy6G028340 vs. NCBI nr
Match: XP_022979035.1 (protein SHORT-ROOT-like [Cucurbita maxima])

HSP 1 Score: 772.7 bits (1994), Expect = 7.5e-220
Identity = 376/404 (93.07%), Postives = 395/404 (97.77%), Query Frame = 0


Query: 87  LDQFSFLSPSPDFNFEFSGRWAPDILLETARAISDRNSARVQQLMWMLNELSSPYGDTDQ 146
           +DQFS++SPSPD NFEFSGRWA DILLETARAISDRNS+RV QLMWMLNELSSPYGDTDQ
Sbjct: 81  IDQFSYVSPSPDINFEFSGRWAVDILLETARAISDRNSSRVHQLMWMLNELSSPYGDTDQ 140

Query: 147 KLAAYFLQALFSRMTDSGDRNYRALASASEKTCSFESTRKVMLKFQEVSPWTTFGHVSCN 206
           KLAAYFLQALFSRMTDSGDRNY ALASASEKTCSF+STRKVMLKFQEVSPWTTFGHVSCN
Sbjct: 141 KLAAYFLQALFSRMTDSGDRNYCALASASEKTCSFDSTRKVMLKFQEVSPWTTFGHVSCN 200

Query: 207 GALIEALEGESKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTTKPSGGTGAA 266
           GALIEALEGESKLHI+DIS+TYCTQWPTLLEALATRTDDTPHLRLTT++TTKP  GTG +
Sbjct: 201 GALIEALEGESKLHIIDISSTYCTQWPTLLEALATRTDDTPHLRLTTIITTKPGTGTGIS 260

Query: 267 ASQKVMKEIGTRMEKFARLMGVPFKFNALYHSGDLSELDMAKLDIKEDEALAINCVGALR 326
           ASQKVMKEIGTRMEKFARLMGVPFKFNALYHSGDLSELD+AKLDIKEDEALAINCVGALR
Sbjct: 261 ASQKVMKEIGTRMEKFARLMGVPFKFNALYHSGDLSELDLAKLDIKEDEALAINCVGALR 320

Query: 327 SVAAINNRRDFLISSFRSLRPRIITVIEEEADLDVGVDGIEFMRGFQECLRWFRVYFETL 386
           S+AAINNRRDFLISSFRSLRPRIITVIEEEADLDVGVDG +F+RGFQECLRWFRVYFETL
Sbjct: 321 SIAAINNRRDFLISSFRSLRPRIITVIEEEADLDVGVDGTDFLRGFQECLRWFRVYFETL 380

Query: 387 DESFSRTSNERLMLERAAGRAIVDLVACSAAESVERRETASRWAQRLHGNGFGPVTFSDE 446
           DESF+RTSNERLMLERAAGR+IVDLVACSAA+SVERRE+A RWAQRLHGNGFGPVTFSDE
Sbjct: 381 DESFTRTSNERLMLERAAGRSIVDLVACSAADSVERRESAVRWAQRLHGNGFGPVTFSDE 440

Query: 447 VCDDVRALLRRYKEGWAMTQSSDVAGIFLTWKEQPVVWASAWRP 491
           VCDDVRALLRRYKEGWAMTQ+SDVAGIFLTWKEQPVVWASAWRP
Sbjct: 441 VCDDVRALLRRYKEGWAMTQNSDVAGIFLTWKEQPVVWASAWRP 484

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BLAST of CsGy6G028340 vs. NCBI nr
Match: XP_023543503.1 (protein SHORT-ROOT-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 771.5 bits (1991), Expect = 1.7e-219
Identity = 377/404 (93.32%), Postives = 392/404 (97.03%), Query Frame = 0


Query: 87  LDQFSFLSPSPDFNFEFSGRWAPDILLETARAISDRNSARVQQLMWMLNELSSPYGDTDQ 146
           +DQFS++SPSPD NFEFSGRWA DILLETARAIS+RNSARV QLMWMLNELSSPYGDTDQ
Sbjct: 81  IDQFSYVSPSPDINFEFSGRWAVDILLETARAISERNSARVHQLMWMLNELSSPYGDTDQ 140

Query: 147 KLAAYFLQALFSRMTDSGDRNYRALASASEKTCSFESTRKVMLKFQEVSPWTTFGHVSCN 206
           KLAAYFLQALFSRMTDSGDRNY ALASASEKTCSF+STRKVMLKFQEVSPWTTFGHVSCN
Sbjct: 141 KLAAYFLQALFSRMTDSGDRNYCALASASEKTCSFDSTRKVMLKFQEVSPWTTFGHVSCN 200

Query: 207 GALIEALEGESKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTTKPSGGTGAA 266
           GALIEALEGESKLHI+DIS+TYCTQWPTLLEALATRTDDTPHLRLTT+VTTKP  GTG +
Sbjct: 201 GALIEALEGESKLHIIDISSTYCTQWPTLLEALATRTDDTPHLRLTTIVTTKPGNGTGVS 260

Query: 267 ASQKVMKEIGTRMEKFARLMGVPFKFNALYHSGDLSELDMAKLDIKEDEALAINCVGALR 326
           ASQKVMKEIGTRMEKFARLMGVPFKFNALYHSGDLSELD AKLDIKEDEALAINCVGALR
Sbjct: 261 ASQKVMKEIGTRMEKFARLMGVPFKFNALYHSGDLSELDFAKLDIKEDEALAINCVGALR 320

Query: 327 SVAAINNRRDFLISSFRSLRPRIITVIEEEADLDVGVDGIEFMRGFQECLRWFRVYFETL 386
           S+ AINNRRDFLISSFRSLRPRIITVIEEEADLDVGVDG EF+RGFQECLRWFRVYFETL
Sbjct: 321 SITAINNRRDFLISSFRSLRPRIITVIEEEADLDVGVDGTEFLRGFQECLRWFRVYFETL 380

Query: 387 DESFSRTSNERLMLERAAGRAIVDLVACSAAESVERRETASRWAQRLHGNGFGPVTFSDE 446
           DESF+RTSNERLMLERAAGRAIVDLVACSAA+SVERRE+A RWAQRLHGNGF PVTFSDE
Sbjct: 381 DESFTRTSNERLMLERAAGRAIVDLVACSAADSVERRESAVRWAQRLHGNGFSPVTFSDE 440

Query: 447 VCDDVRALLRRYKEGWAMTQSSDVAGIFLTWKEQPVVWASAWRP 491
           VCDDVRALLRRYKEGWAMTQ+SDVAGIFLTWKEQPVVWASAWRP
Sbjct: 441 VCDDVRALLRRYKEGWAMTQNSDVAGIFLTWKEQPVVWASAWRP 484

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BLAST of CsGy6G028340 vs. NCBI nr
Match: XP_022949653.1 (protein SHORT-ROOT-like [Cucurbita moschata])

HSP 1 Score: 771.2 bits (1990), Expect = 2.2e-219
Identity = 377/404 (93.32%), Postives = 393/404 (97.28%), Query Frame = 0


Query: 87  LDQFSFLSPSPDFNFEFSGRWAPDILLETARAISDRNSARVQQLMWMLNELSSPYGDTDQ 146
           +DQFS++SPSPD NFEFSGRWA DILLETARAIS+RNSARV QLMWMLNELSSPYGDTDQ
Sbjct: 81  IDQFSYVSPSPDINFEFSGRWAVDILLETARAISERNSARVHQLMWMLNELSSPYGDTDQ 140

Query: 147 KLAAYFLQALFSRMTDSGDRNYRALASASEKTCSFESTRKVMLKFQEVSPWTTFGHVSCN 206
           KLAAYFLQALFSRMTDSGDRNY ALASASEKTCSF+STRKVMLKFQEVSPWTTFGHVSCN
Sbjct: 141 KLAAYFLQALFSRMTDSGDRNYCALASASEKTCSFDSTRKVMLKFQEVSPWTTFGHVSCN 200

Query: 207 GALIEALEGESKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTTKPSGGTGAA 266
           GALIEALEGESKLHI+DIS+TYCTQWPTLLEALATRTDDTPHLRLTT+VTTKP  GTG +
Sbjct: 201 GALIEALEGESKLHIIDISSTYCTQWPTLLEALATRTDDTPHLRLTTIVTTKPGNGTGVS 260

Query: 267 ASQKVMKEIGTRMEKFARLMGVPFKFNALYHSGDLSELDMAKLDIKEDEALAINCVGALR 326
           ASQKVMKEIGTRMEKFARLMGVPFKF+ALYHSGDLSELD AKLDIKEDEALAINCVGALR
Sbjct: 261 ASQKVMKEIGTRMEKFARLMGVPFKFSALYHSGDLSELDFAKLDIKEDEALAINCVGALR 320

Query: 327 SVAAINNRRDFLISSFRSLRPRIITVIEEEADLDVGVDGIEFMRGFQECLRWFRVYFETL 386
           S+AAINNRRDFLISSFRSLRPRIITVIEEEADLDVGVDG EF+RGFQECLRWFRVYFETL
Sbjct: 321 SIAAINNRRDFLISSFRSLRPRIITVIEEEADLDVGVDGTEFLRGFQECLRWFRVYFETL 380

Query: 387 DESFSRTSNERLMLERAAGRAIVDLVACSAAESVERRETASRWAQRLHGNGFGPVTFSDE 446
           DESF+RTSNERLMLERAAGRAIVDLVACSAA+SVERRE+A RWAQRLHGNGF PVTFSDE
Sbjct: 381 DESFTRTSNERLMLERAAGRAIVDLVACSAADSVERRESAVRWAQRLHGNGFSPVTFSDE 440

Query: 447 VCDDVRALLRRYKEGWAMTQSSDVAGIFLTWKEQPVVWASAWRP 491
           VCDDVRALLRRYKEGWAMTQ+SDVAGIFLTWKEQPVVWASAWRP
Sbjct: 441 VCDDVRALLRRYKEGWAMTQNSDVAGIFLTWKEQPVVWASAWRP 484

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BLAST of CsGy6G028340 vs. TAIR10
Match: AT4G37650.1 (GRAS family transcription factor)

HSP 1 Score: 560.8 bits (1444), Expect = 8.1e-160
Identity = 275/407 (67.57%), Postives = 331/407 (81.33%), Query Frame = 0


Query: 90  FSFLSPSPDFNFEFSGRWAPDILLETARAISDRNSARVQQLMWMLNELSSPYGDTDQKLA 149
           FS     P F+F  + +WA  +LLE ARA SD+++AR QQ++W LNELSSPYGDT+QKLA
Sbjct: 125 FSIPQTPPSFDFSANAKWADSVLLEAARAFSDKDTARAQQILWTLNELSSPYGDTEQKLA 184

Query: 150 AYFLQALFSRMTDSGDRNYRAL--ASASEKTCSFESTRKVMLKFQEVSPWTTFGHVSCNG 209
           +YFLQALF+RMT SG+R YR +  A+A+EKTCSFESTRK +LKFQEVSPW TFGHV+ NG
Sbjct: 185 SYFLQALFNRMTGSGERCYRTMVTAAATEKTCSFESTRKTVLKFQEVSPWATFGHVAANG 244

Query: 210 ALIEALEGESKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTTKPSGGTGAAA 269
           A++EA++GE+K+HIVDIS+T+CTQWPTLLEALATR+DDTPHLRLTTVV           A
Sbjct: 245 AILEAVDGEAKIHIVDISSTFCTQWPTLLEALATRSDDTPHLRLTTVVVAN-KFVNDQTA 304

Query: 270 SQKVMKEIGTRMEKFARLMGVPFKFNALYHSGDLSELDMAKLDIKEDEALAINCVGALRS 329
           S ++MKEIG RMEKFARLMGVPFKFN ++H GDLSE D+ +LD+K DE LAINCVGA+  
Sbjct: 305 SHRMMKEIGNRMEKFARLMGVPFKFNIIHHVGDLSEFDLNELDVKPDEVLAINCVGAMHG 364

Query: 330 VAAINNRRDFLISSFRSLRPRIITVIEEEADL---DVGVDGIEFMRGFQECLRWFRVYFE 389
           +A+  + RD +ISSFR LRPRI+TV+EEEADL   + G    EF+RGF ECLRWFRV FE
Sbjct: 365 IASRGSPRDAVISSFRRLRPRIVTVVEEEADLVGEEEGGFDDEFLRGFGECLRWFRVCFE 424

Query: 390 TLDESFSRTSNERLMLERAAGRAIVDLVACSAAESVERRETASRWAQRLHGNGFGPVTFS 449
           + +ESF RTSNERLMLERAAGRAIVDLVAC  ++S ERRETA +W++R+  +GFG V +S
Sbjct: 425 SWEESFPRTSNERLMLERAAGRAIVDLVACEPSDSTERRETARKWSRRMRNSGFGAVGYS 484

Query: 450 DEVCDDVRALLRRYKEG-WAMTQSSDVAGIFLTWKEQPVVWASAWRP 491
           DEV DDVRALLRRYKEG W+M Q  D AGIFL W++QPVVWASAWRP
Sbjct: 485 DEVADDVRALLRRYKEGVWSMVQCPDAAGIFLCWRDQPVVWASAWRP 530

[Close]

BLAST of CsGy6G028340 vs. TAIR10
Match: AT2G04890.1 (SCARECROW-like 21)

HSP 1 Score: 203.8 bits (517), Expect = 2.5e-52
Identity = 120/384 (31.25%), Postives = 205/384 (53.39%), Query Frame = 0


Query: 111 ILLETARAISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFSRMTDSGDRNYRA 170
           +L+  A+A+S+ N    +  M  L  + S  G+  Q+L AY L+ L +R+  SG   Y++
Sbjct: 53  VLVACAKAVSENNLLMARWCMGELRGMVSISGEPIQRLGAYMLEGLVARLAASGSSIYKS 112

Query: 171 LASASEKTCSFESTRKVMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIVDISNTYCT 230
           L S   ++  F S   V+    EV P+  FG++S NGA+ EA++ E ++HI+D      +
Sbjct: 113 LQSREPESYEFLSYVYVL---HEVCPYFKFGYMSANGAIAEAMKDEERIHIIDFQIGQGS 172

Query: 231 QWPTLLEALATRTDDTPHLRLTTVVTTKPSGGTGAAASQKVMKEIGTRMEKFARLMGVPF 290
           QW  L++A A R    P++R+T V       G G+     V+  +  R+EK A+   VPF
Sbjct: 173 QWIALIQAFAARPGGAPNIRITGV-------GDGS-----VLVTVKKRLEKLAKKFDVPF 232

Query: 291 KFNALYHSGDLSELDMAKLDIKEDEALAINCVGALRSV----AAINNRRDFLISSFRSLR 350
           +FNA+  S    E+++  LD+++ EAL +N    L  +     ++ N RD L+   +SL 
Sbjct: 233 RFNAV--SRPSCEVEVENLDVRDGEALGVNFAYMLHHLPDESVSMENHRDRLLRMVKSLS 292

Query: 351 PRIITVIEEEADLDVGVDGIEFMRGFQECLRWFRVYFETLDESFSRTSNERLMLER-AAG 410
           P+++T++E+E + +       F+  F E L ++   FE++D    R   ER+ +E+    
Sbjct: 293 PKVVTLVEQECNTNTS----PFLPRFLETLSYYTAMFESIDVMLPRNHKERINIEQHCMA 352

Query: 411 RAIVDLVACSAAESVERRETASRWAQRLHGNGFGPVTFSDEVCDDVRALLRRYKEGWAMT 470
           R +V+++AC  AE +ER E   +W  R    GF P   S  +   +RALLR Y  G+A+ 
Sbjct: 353 RDVVNIIACEGAERIERHELLGKWKSRFSMAGFEPYPLSSIISATIRALLRDYSNGYAIE 412

Query: 471 QSSDVAGIFLTWKEQPVVWASAWR 490
           +      ++L W ++ +V + AW+
Sbjct: 413 ERD--GALYLGWMDRILVSSCAWK 413

[Close]

BLAST of CsGy6G028340 vs. TAIR10
Match: AT3G49950.1 (GRAS family transcription factor)

HSP 1 Score: 195.3 bits (495), Expect = 8.9e-50
Identity = 129/419 (30.79%), Postives = 206/419 (49.16%), Query Frame = 0


Query: 87  LDQFSFLSPSP-----DFNFEFSGRWAPDILLETARAISDRNSARVQQLMWMLNELSSPY 146
           L+   F SP P     D NF         +LL  A AI   ++A   Q++W+LN ++ P 
Sbjct: 7   LNPTRFPSPKPLRGCGDANF------MEQLLLHCATAIDSNDAALTHQILWVLNNIAPPD 66

Query: 147 GDTDQKLAAYFLQALFSRMTDSGDRNYRALASASEKTCSFESTRKVMLKFQEVSPWTTFG 206
           GD+ Q+L + FL+AL SR           ++   +       +   +  F +++PW  FG
Sbjct: 67  GDSTQRLTSAFLRALLSRAVSKTPTLSSTISFLPQADELHRFSVVELAAFVDLTPWHRFG 126

Query: 207 HVSCNGALIEALEGESKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTTKPSG 266
            ++ N A++ A+EG S +HIVD+S T+C Q PTL++A+A+R +  P L   TVV++    
Sbjct: 127 FIAANAAILTAVEGYSTVHIVDLSLTHCMQIPTLIDAMASRLNKPPPLLKLTVVSSSDHF 186

Query: 267 GTGAAASQKVMKEIGTRMEKFARLMGVPFKFN---ALYHSGDLSELDMAKL-DIKEDEAL 326
                 S    +E+G+++  FA    +  +F    + Y  G  S L   ++     +EAL
Sbjct: 187 PPFINIS---YEELGSKLVNFATTRNITMEFTIVPSTYSDGFSSLLQQLRIYPSSFNEAL 246

Query: 327 AINCVGALRSV------AAINNRRDFLISSFRSLRPRIITVIEEEADLDVGVDGIEFMRG 386
            +NC   LR +      ++ ++ R   +   RSL PRI+T+IEE+ DL         +  
Sbjct: 247 VVNCHMMLRYIPEEPLTSSSSSLRTVFLKQLRSLNPRIVTLIEEDVDL----TSENLVNR 306

Query: 387 FQECLRWFRVYFETLDESFSRTSNERLMLERAAGRAIVDLVACSAAESVERRETASRWAQ 446
            +    +F + F+T D   +  S +R   E      I ++VA   AE VER ET  RW +
Sbjct: 307 LKSAFNYFWIPFDTTD---TFMSEQRRWYEAEISWKIENVVAKEGAERVERTETKRRWIE 366

Query: 447 RLHGNGFGPVTFSDEVCDDVRALLRRYKEGWAMTQSSDVAGIFLTWKEQPVVWASAWRP 491
           R+    FG V   ++   DV+A+L  +  GW M +  D   + LTWK   VV+A+ W P
Sbjct: 367 RMREAEFGGVRVKEDAVADVKAMLEEHAVGWGMKKEDDDESLVLTWKGHSVVFATVWVP 409

[Close]

BLAST of CsGy6G028340 vs. TAIR10
Match: AT1G50600.1 (scarecrow-like 5)

HSP 1 Score: 191.4 bits (485), Expect = 1.3e-48
Identity = 118/386 (30.57%), Postives = 195/386 (50.52%), Query Frame = 0


Query: 111 ILLETARAISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFSRMTDSGDRNYRA 170
           +L E A+A+ + +      L+  L ++ S  G+  Q+L AY L+ L +R+  SG   Y+A
Sbjct: 230 VLYECAKAVENYDLEMTDWLISQLQQMVSVSGEPVQRLGAYMLEGLVARLASSGSSIYKA 289

Query: 171 LASASEKTCSFESTRKVMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIVDISNTYCT 230
           L     K  +       M    E  P+  FG+ S NGA+ EA++ ES +HI+D   +   
Sbjct: 290 LRC---KDPTGPELLTYMHILYEACPYFKFGYESANGAIAEAVKNESFVHIIDFQISQGG 349

Query: 231 QWPTLLEALATRTDDTPHLRLTTVVTTKPSGGTGAAASQKVMKEIGTRMEKFARLMGVPF 290
           QW +L+ AL  R    P++R+T +   + S      A Q  ++ +G R+ K A + GVPF
Sbjct: 350 QWVSLIRALGARPGGPPNVRITGIDDPRSS-----FARQGGLELVGQRLGKLAEMCGVPF 409

Query: 291 KFNALYHSGDL--SELDMAKLDIKEDEALAINCVGALRSV----AAINNRRDFLISSFRS 350
           +F    H   L  +E+++ KL ++  EALA+N    L  +      + N RD L+   + 
Sbjct: 410 EF----HGAALCCTEVEIEKLGVRNGEALAVNFPLVLHHMPDESVTVENHRDRLLRLVKH 469

Query: 351 LRPRIITVIEEEADLDVGVDGIEFMRGFQECLRWFRVYFETLDESFSRTSNERLMLER-A 410
           L P ++T++E+EA+ +       F+  F E +  +   FE++D   +R   ER+ +E+  
Sbjct: 470 LSPNVVTLVEQEANTNTA----PFLPRFVETMNHYLAVFESIDVKLARDHKERINVEQHC 529

Query: 411 AGRAIVDLVACSAAESVERRETASRWAQRLHGNGFGPVTFSDEVCDDVRALLRRYKEGWA 470
             R +V+L+AC   E  ER E   +W  R H  GF P   S  V   ++ LL  Y E + 
Sbjct: 530 LAREVVNLIACEGVEREERHEPLGKWRSRFHMAGFKPYPLSSYVNATIKGLLESYSEKYT 589

Query: 471 MTQSSDVAGIFLTWKEQPVVWASAWR 490
           + +      ++L WK QP++ + AWR
Sbjct: 590 LEERD--GALYLGWKNQPLITSCAWR 597

[Close]

BLAST of CsGy6G028340 vs. TAIR10
Match: AT5G48150.1 (GRAS family transcription factor)

HSP 1 Score: 191.4 bits (485), Expect = 1.3e-48
Identity = 112/383 (29.24%), Postives = 198/383 (51.70%), Query Frame = 0


Query: 112 LLETARAISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFSRMTDSGDRNYRAL 171
           L+  A+A+S+ +      +M  L ++ S  G+  Q+L AY L+ L +++  SG   Y+AL
Sbjct: 123 LVSCAKAMSENDLMMAHSMMEKLRQMVSVSGEPIQRLGAYLLEGLVAQLASSGSSIYKAL 182

Query: 172 ASASEKTCSFESTRKVMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIVDISNTYCTQ 231
               E   +       M    EV P+  FG++S NGA+ EA++ E+++HI+D      +Q
Sbjct: 183 NRCPEPAST--ELLSYMHILYEVCPYFKFGYMSANGAIAEAMKEENRVHIIDFQIGQGSQ 242

Query: 232 WPTLLEALATRTDDTPHLRLTTVVTTKPSGGTGAAASQKVMKEIGTRMEKFARLMGVPFK 291
           W TL++A A R    P +R+T +        T A A    +  +G R+ K A+   VPF+
Sbjct: 243 WVTLIQAFAARPGGPPRIRITGI-----DDMTSAYARGGGLSIVGNRLAKLAKQFNVPFE 302

Query: 292 FNALYHSGDLSELDMAKLDIKEDEALAINCVGALRSV----AAINNRRDFLISSFRSLRP 351
           FN++  S  +SE+    L ++  EALA+N    L  +     +  N RD L+   +SL P
Sbjct: 303 FNSV--SVSVSEVKPKNLGVRPGEALAVNFAFVLHHMPDESVSTENHRDRLLRMVKSLSP 362

Query: 352 RIITVIEEEADLDVGVDGIEFMRGFQECLRWFRVYFETLDESFSRTSNERLMLER-AAGR 411
           +++T++E+E++ +       F   F E + ++   FE++D +  R   +R+ +E+    R
Sbjct: 363 KVVTLVEQESNTNTAA----FFPRFMETMNYYAAMFESIDVTLPRDHKQRINVEQHCLAR 422

Query: 412 AIVDLVACSAAESVERRETASRWAQRLHGNGFGPVTFSDEVCDDVRALLRRYKEGWAMTQ 471
            +V+++AC  A+ VER E   +W  R    GF P   S  V   +++LLR Y + + + +
Sbjct: 423 DVVNIIACEGADRVERHELLGKWRSRFGMAGFTPYPLSPLVNSTIKSLLRNYSDKYRLEE 482

Query: 472 SSDVAGIFLTWKEQPVVWASAWR 490
                 ++L W  + +V + AW+
Sbjct: 483 RD--GALYLGWMHRDLVASCAWK 490

[Close]

BLAST of CsGy6G028340 vs. Swiss-Prot
Match: sp|Q9SZF7|SHR_ARATH (Protein SHORT-ROOT OS=Arabidopsis thaliana OX=3702 GN=SHR PE=1 SV=1)

HSP 1 Score: 560.8 bits (1444), Expect = 1.5e-158
Identity = 275/407 (67.57%), Postives = 331/407 (81.33%), Query Frame = 0


Query: 90  FSFLSPSPDFNFEFSGRWAPDILLETARAISDRNSARVQQLMWMLNELSSPYGDTDQKLA 149
           FS     P F+F  + +WA  +LLE ARA SD+++AR QQ++W LNELSSPYGDT+QKLA
Sbjct: 125 FSIPQTPPSFDFSANAKWADSVLLEAARAFSDKDTARAQQILWTLNELSSPYGDTEQKLA 184

Query: 150 AYFLQALFSRMTDSGDRNYRAL--ASASEKTCSFESTRKVMLKFQEVSPWTTFGHVSCNG 209
           +YFLQALF+RMT SG+R YR +  A+A+EKTCSFESTRK +LKFQEVSPW TFGHV+ NG
Sbjct: 185 SYFLQALFNRMTGSGERCYRTMVTAAATEKTCSFESTRKTVLKFQEVSPWATFGHVAANG 244

Query: 210 ALIEALEGESKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTTKPSGGTGAAA 269
           A++EA++GE+K+HIVDIS+T+CTQWPTLLEALATR+DDTPHLRLTTVV           A
Sbjct: 245 AILEAVDGEAKIHIVDISSTFCTQWPTLLEALATRSDDTPHLRLTTVVVAN-KFVNDQTA 304

Query: 270 SQKVMKEIGTRMEKFARLMGVPFKFNALYHSGDLSELDMAKLDIKEDEALAINCVGALRS 329
           S ++MKEIG RMEKFARLMGVPFKFN ++H GDLSE D+ +LD+K DE LAINCVGA+  
Sbjct: 305 SHRMMKEIGNRMEKFARLMGVPFKFNIIHHVGDLSEFDLNELDVKPDEVLAINCVGAMHG 364

Query: 330 VAAINNRRDFLISSFRSLRPRIITVIEEEADL---DVGVDGIEFMRGFQECLRWFRVYFE 389
           +A+  + RD +ISSFR LRPRI+TV+EEEADL   + G    EF+RGF ECLRWFRV FE
Sbjct: 365 IASRGSPRDAVISSFRRLRPRIVTVVEEEADLVGEEEGGFDDEFLRGFGECLRWFRVCFE 424

Query: 390 TLDESFSRTSNERLMLERAAGRAIVDLVACSAAESVERRETASRWAQRLHGNGFGPVTFS 449
           + +ESF RTSNERLMLERAAGRAIVDLVAC  ++S ERRETA +W++R+  +GFG V +S
Sbjct: 425 SWEESFPRTSNERLMLERAAGRAIVDLVACEPSDSTERRETARKWSRRMRNSGFGAVGYS 484

Query: 450 DEVCDDVRALLRRYKEG-WAMTQSSDVAGIFLTWKEQPVVWASAWRP 491
           DEV DDVRALLRRYKEG W+M Q  D AGIFL W++QPVVWASAWRP
Sbjct: 485 DEVADDVRALLRRYKEGVWSMVQCPDAAGIFLCWRDQPVVWASAWRP 530

[Close]

BLAST of CsGy6G028340 vs. Swiss-Prot
Match: sp|Q75I13|SHR2_ORYSJ (Protein SHORT-ROOT 2 OS=Oryza sativa subsp. japonica OX=39947 GN=SHR2 PE=1 SV=1)

HSP 1 Score: 466.8 bits (1200), Expect = 2.9e-130
Identity = 241/426 (56.57%), Postives = 305/426 (71.60%), Query Frame = 0


Query: 105 GRWAPDILLETARAISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFSRMTDSG 164
           GRWA  +L+E ARA++ R+S RVQQLMWMLNEL+SPYGD DQKLA+YFLQ LF+R+T SG
Sbjct: 185 GRWAAQLLMECARAVAGRDSQRVQQLMWMLNELASPYGDVDQKLASYFLQGLFARLTTSG 244

Query: 165 DRNYRALASASEKTCSFESTRKVMLKFQEVSPWTTFGHVSCNGALIEAL----------- 224
            R  R LA+AS++  SF+STR+  LKFQE+SPWT FGHV+ NGA++E+            
Sbjct: 245 PRTLRTLATASDRNASFDSTRRTALKFQELSPWTPFGHVAANGAILESFLEXXXXXXXXX 304

Query: 225 --------EGESKLHIVDISNTYCTQWPTLLEALATR-TDDTPHLRLTTVVTTKPSGGTG 284
                       +LHI+D+SNT+CTQWPTLLEALATR +DDTPHL +TTVV T       
Sbjct: 305 XXXXXXXXXXXXRLHILDLSNTFCTQWPTLLEALATRSSDDTPHLSITTVVPT----AAP 364

Query: 285 AAASQKVMKEIGTRMEKFARLMGVPFKFNALYHSGDLSELDMAKLDIKE---DEALAINC 344
           +AA+Q+VM+EIG R+EKFARLMGVPF F A++HSGDL++LD+A LD++E     ALA+NC
Sbjct: 365 SAAAQRVMREIGQRLEKFARLMGVPFSFRAVHHSGDLADLDLAALDLREGGATAALAVNC 424

Query: 345 VGALRSVAAINNRRDFLISSFRSLRPRIITVIEEEADL-----DVGVDG---IEFMRGFQ 404
           V ALR VA     RD  ++S R L PR++TV+EEEADL     D   +      F++ F 
Sbjct: 425 VNALRGVA---RGRDAFVASLRRLEPRVVTVVEEEADLAAPEADASSEADTDAAFVKVFG 484

Query: 405 ECLRWFRVYFETLDESFSRTSNERLMLERAAGRAIVDLVACSAAESVERRETASRWAQRL 464
           E LR+F  Y ++L+ESF +TSNERL LERA GRAIVDLV+C A++S ERRETA+ WA+R+
Sbjct: 485 EGLRFFSAYMDSLEESFPKTSNERLSLERAVGRAIVDLVSCPASQSAERRETAASWARRM 544

Query: 465 HGNGFGPVTFSDEVCDDVRALLRRYKEGWAMTQS---------SDVAGIFLTWKEQPVVW 491
              GF P  FS++V DDVR+LLRRYKEGW+M  +         +  AG FL WKEQPVVW
Sbjct: 545 RSAGFSPAAFSEDVADDVRSLLRRYKEGWSMRDAGGATDDAAGAAAAGAFLAWKEQPVVW 603

[Close]

BLAST of CsGy6G028340 vs. Swiss-Prot
Match: sp|A2XIA8|SHR2_ORYSI (Protein SHORT-ROOT 2 OS=Oryza sativa subsp. indica OX=39946 GN=SHR2 PE=3 SV=1)

HSP 1 Score: 465.7 bits (1197), Expect = 6.4e-130
Identity = 240/426 (56.34%), Postives = 305/426 (71.60%), Query Frame = 0


Query: 105 GRWAPDILLETARAISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFSRMTDSG 164
           GRWA  +L+E ARA++ R+S RVQQLMWMLNEL+SPYGD DQKLA+YFLQ LF+R+T SG
Sbjct: 185 GRWAAQLLMECARAVAGRDSQRVQQLMWMLNELASPYGDVDQKLASYFLQGLFARLTTSG 244

Query: 165 DRNYRALASASEKTCSFESTRKVMLKFQEVSPWTTFGHVSCNGALIEAL----------- 224
            R  R LA+AS++  SF+STR+  LKFQE+SPWT FGHV+ NGA++E+            
Sbjct: 245 PRTLRTLATASDRNASFDSTRRTALKFQELSPWTPFGHVAANGAILESFLEXXXXXXXXX 304

Query: 225 --------EGESKLHIVDISNTYCTQWPTLLEALATR-TDDTPHLRLTTVVTTKPSGGTG 284
                       +LHI+D+SNT+CTQWPTLLEALATR +DDTPHL +TTVV T       
Sbjct: 305 XXXXXXXXXXXXRLHILDLSNTFCTQWPTLLEALATRSSDDTPHLSITTVVPT----AAP 364

Query: 285 AAASQKVMKEIGTRMEKFARLMGVPFKFNALYHSGDLSELDMAKLDIKE---DEALAINC 344
           +AA+Q+VM+EIG R+EKFARLMGVPF F A++H+GDL++LD+A LD++E     ALA+NC
Sbjct: 365 SAAAQRVMREIGQRLEKFARLMGVPFSFRAVHHAGDLADLDLAALDLREGGATAALAVNC 424

Query: 345 VGALRSVAAINNRRDFLISSFRSLRPRIITVIEEEADL-----DVGVDG---IEFMRGFQ 404
           V ALR VA     RD  ++S R L PR++TV+EEEADL     D   +      F++ F 
Sbjct: 425 VNALRGVA---RGRDAFVASLRRLEPRVVTVVEEEADLAAPEADASSEADTDAAFVKVFG 484

Query: 405 ECLRWFRVYFETLDESFSRTSNERLMLERAAGRAIVDLVACSAAESVERRETASRWAQRL 464
           E LR+F  Y ++L+ESF +TSNERL LERA GRAIVDLV+C A++S ERRETA+ WA+R+
Sbjct: 485 EGLRFFSAYMDSLEESFPKTSNERLSLERAVGRAIVDLVSCPASQSAERRETAASWARRM 544

Query: 465 HGNGFGPVTFSDEVCDDVRALLRRYKEGWAMTQS---------SDVAGIFLTWKEQPVVW 491
              GF P  FS++V DDVR+LLRRYKEGW+M  +         +  AG FL WKEQPVVW
Sbjct: 545 RSAGFSPAAFSEDVADDVRSLLRRYKEGWSMRDAGGATDDAAGAAAAGAFLAWKEQPVVW 603

[Close]

BLAST of CsGy6G028340 vs. Swiss-Prot
Match: sp|A2YN56|SHR1_ORYSI (Protein SHORT-ROOT 1 OS=Oryza sativa subsp. indica OX=39946 GN=SHR1 PE=3 SV=1)

HSP 1 Score: 462.6 bits (1189), Expect = 5.4e-129
Identity = 238/413 (57.63%), Postives = 306/413 (74.09%), Query Frame = 0


Query: 108 APDILLETARAISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFSRMTDSGDRN 167
           A  +LLE AR+++ R+S RVQQLMWMLNEL+SPYGD +QKLA+YFLQ LF+R+T SG R 
Sbjct: 192 ASQLLLECARSVAARDSQRVQQLMWMLNELASPYGDVEQKLASYFLQGLFARLTASGQRT 251

Query: 168 YRALASASEKTCSFESTRKVMLKFQEVSPWTTFGHVSCNGALIE--------ALEGESKL 227
            R LA+AS++  SF+STR+  L+FQE+SPW++FGHV+ NGA++E        A     + 
Sbjct: 252 LRTLAAASDRNTSFDSTRRTALRFQELSPWSSFGHVAANGAILESFLEVAAAASSETQRF 311

Query: 228 HIVDISNTYCTQWPTLLEALATRT-DDTPHLRLTTVVTTKPSGGTGAAASQKVMKEIGTR 287
           HI+D+SNT+CTQWPTLLEALATR+ D+TPHL +TTVV+  PS  T  AA Q+VM+EIG R
Sbjct: 312 HILDLSNTFCTQWPTLLEALATRSADETPHLSITTVVSAAPSAPT--AAVQRVMREIGQR 371

Query: 288 MEKFARLMGVPFKFNALYHSGDLSELDMAKLDIKE---DEALAINCVGALRSVA-AINNR 347
           MEKFARLMGVPF+F A++HSGDL+ELD+  LD++E     ALA+NCV +LR V      R
Sbjct: 372 MEKFARLMGVPFRFRAVHHSGDLAELDLDALDLREGGATTALAVNCVNSLRGVVPGRARR 431

Query: 348 RDFLISSFRSLRPRIITVIEEEADL------------DVGVDGIEFMRGFQECLRWFRVY 407
           RD   +S R L PR++TV+EEEADL            + G     F++ F E LR+F  Y
Sbjct: 432 RDAFAASLRRLDPRVVTVVEEEADLVASDPDASSATEEGGDTEAAFLKVFGEGLRFFSAY 491

Query: 408 FETLDESFSRTSNERLMLERAAGRAIVDLVACSAAESVERRETASRWAQRLHGNGFGPVT 467
            ++L+ESF +TSNERL LER AGRAIVDLV+C A+ES+ERRETA+ WA+R+   GF PV 
Sbjct: 492 MDSLEESFPKTSNERLALERGAGRAIVDLVSCPASESMERRETAASWARRMRSAGFSPVA 551

Query: 468 FSDEVCDDVRALLRRYKEGWAMTQ-----SSDVAGIFLTWKEQPVVWASAWRP 491
           FS++V DDVR+LLRRY+EGW+M +     S+  AG+FL WKEQP+VWASAWRP
Sbjct: 552 FSEDVADDVRSLLRRYREGWSMREAGTDDSAAGAGVFLAWKEQPLVWASAWRP 602

[Close]

BLAST of CsGy6G028340 vs. Swiss-Prot
Match: sp|Q8H2X8|SHR1_ORYSJ (Protein SHORT-ROOT 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SHR1 PE=1 SV=2)

HSP 1 Score: 462.2 bits (1188), Expect = 7.0e-129
Identity = 238/413 (57.63%), Postives = 306/413 (74.09%), Query Frame = 0


Query: 108 APDILLETARAISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFSRMTDSGDRN 167
           A  +LLE AR+++ R+S RVQQLMWMLNEL+SPYGD +QKLA+YFLQ LF+R+T SG R 
Sbjct: 192 ASQLLLECARSVAARDSQRVQQLMWMLNELASPYGDVEQKLASYFLQGLFARLTASGPRT 251

Query: 168 YRALASASEKTCSFESTRKVMLKFQEVSPWTTFGHVSCNGALIE--------ALEGESKL 227
            R LA+AS++  SF+STR+  L+FQE+SPW++FGHV+ NGA++E        A     + 
Sbjct: 252 LRTLAAASDRNTSFDSTRRTALRFQELSPWSSFGHVAANGAILESFLEVAAAASSETQRF 311

Query: 228 HIVDISNTYCTQWPTLLEALATRT-DDTPHLRLTTVVTTKPSGGTGAAASQKVMKEIGTR 287
           HI+D+SNT+CTQWPTLLEALATR+ D+TPHL +TTVV+  PS  T  AA Q+VM+EIG R
Sbjct: 312 HILDLSNTFCTQWPTLLEALATRSADETPHLSITTVVSAAPSAPT--AAVQRVMREIGQR 371

Query: 288 MEKFARLMGVPFKFNALYHSGDLSELDMAKLDIKE---DEALAINCVGALRSVA-AINNR 347
           MEKFARLMGVPF+F A++HSGDL+ELD+  LD++E     ALA+NCV +LR V      R
Sbjct: 372 MEKFARLMGVPFRFRAVHHSGDLAELDLDALDLREGGATTALAVNCVNSLRGVVPGRARR 431

Query: 348 RDFLISSFRSLRPRIITVIEEEADL------------DVGVDGIEFMRGFQECLRWFRVY 407
           RD   +S R L PR++TV+EEEADL            + G     F++ F E LR+F  Y
Sbjct: 432 RDAFAASLRRLDPRVVTVVEEEADLVASDPDASSATEEGGDTEAAFLKVFGEGLRFFSAY 491

Query: 408 FETLDESFSRTSNERLMLERAAGRAIVDLVACSAAESVERRETASRWAQRLHGNGFGPVT 467
            ++L+ESF +TSNERL LER AGRAIVDLV+C A+ES+ERRETA+ WA+R+   GF PV 
Sbjct: 492 MDSLEESFPKTSNERLALERGAGRAIVDLVSCPASESMERRETAASWARRMRSAGFSPVA 551

Query: 468 FSDEVCDDVRALLRRYKEGWAMTQ-----SSDVAGIFLTWKEQPVVWASAWRP 491
           FS++V DDVR+LLRRY+EGW+M +     S+  AG+FL WKEQP+VWASAWRP
Sbjct: 552 FSEDVADDVRSLLRRYREGWSMREAGTDDSAAGAGVFLAWKEQPLVWASAWRP 602

[Close]

BLAST of CsGy6G028340 vs. TrEMBL
Match: tr|A0A0A0KGH6|A0A0A0KGH6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G495620 PE=3 SV=1)

HSP 1 Score: 815.5 bits (2105), Expect = 6.6e-233
Identity = 490/490 (100.00%), Postives = 490/490 (100.00%), Query Frame = 0


Query: 1   MDTLFRLVNLQSDQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MDTLFRLVNLQSDQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MDTLFRLVNLQSDQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXLDQFSFLSPSPDFNFEFSGRWAPDILLETARAIS 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXLDQFSFLSPSPDFNFEFSGRWAPDILLETARAIS
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXLDQFSFLSPSPDFNFEFSGRWAPDILLETARAIS 120

Query: 121 DRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFSRMTDSGDRNYRALASASEKTCS 180
           DRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFSRMTDSGDRNYRALASASEKTCS
Sbjct: 121 DRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFSRMTDSGDRNYRALASASEKTCS 180

Query: 181 FESTRKVMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIVDISNTYCTQWPTLLEALA 240
           FESTRKVMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIVDISNTYCTQWPTLLEALA
Sbjct: 181 FESTRKVMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIVDISNTYCTQWPTLLEALA 240

Query: 241 TRTDDTPHLRLTTVVTTKPSGGTGAAASQKVMKEIGTRMEKFARLMGVPFKFNALYHSGD 300
           TRTDDTPHLRLTTVVTTKPSGGTGAAASQKVMKEIGTRMEKFARLMGVPFKFNALYHSGD
Sbjct: 241 TRTDDTPHLRLTTVVTTKPSGGTGAAASQKVMKEIGTRMEKFARLMGVPFKFNALYHSGD 300

Query: 301 LSELDMAKLDIKEDEALAINCVGALRSVAAINNRRDFLISSFRSLRPRIITVIEEEADLD 360
           LSELDMAKLDIKEDEALAINCVGALRSVAAINNRRDFLISSFRSLRPRIITVIEEEADLD
Sbjct: 301 LSELDMAKLDIKEDEALAINCVGALRSVAAINNRRDFLISSFRSLRPRIITVIEEEADLD 360

Query: 361 VGVDGIEFMRGFQECLRWFRVYFETLDESFSRTSNERLMLERAAGRAIVDLVACSAAESV 420
           VGVDGIEFMRGFQECLRWFRVYFETLDESFSRTSNERLMLERAAGRAIVDLVACSAAESV
Sbjct: 361 VGVDGIEFMRGFQECLRWFRVYFETLDESFSRTSNERLMLERAAGRAIVDLVACSAAESV 420

Query: 421 ERRETASRWAQRLHGNGFGPVTFSDEVCDDVRALLRRYKEGWAMTQSSDVAGIFLTWKEQ 480
           ERRETASRWAQRLHGNGFGPVTFSDEVCDDVRALLRRYKEGWAMTQSSDVAGIFLTWKEQ
Sbjct: 421 ERRETASRWAQRLHGNGFGPVTFSDEVCDDVRALLRRYKEGWAMTQSSDVAGIFLTWKEQ 480

Query: 481 PVVWASAWRP 491
           PVVWASAWRP
Sbjct: 481 PVVWASAWRP 490

[Close]

BLAST of CsGy6G028340 vs. TrEMBL
Match: tr|A0A1S3B100|A0A1S3B100_CUCME (protein SHORT-ROOT OS=Cucumis melo OX=3656 GN=LOC103484850 PE=3 SV=1)

HSP 1 Score: 813.5 bits (2100), Expect = 2.5e-232
Identity = 488/490 (99.59%), Postives = 489/490 (99.80%), Query Frame = 0


Query: 1   MDTLFRLVNLQSDQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MDTLFRLVNLQSDQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MDTLFRLVNLQSDQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXLDQFSFLSPSPDFNFEFSGRWAPDILLETARAIS 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXLDQFSFLSPSPDFNFEFSGRWAPDILLETARAIS
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXLDQFSFLSPSPDFNFEFSGRWAPDILLETARAIS 120

Query: 121 DRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFSRMTDSGDRNYRALASASEKTCS 180
           DRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFSRMTDSGDRNYRALASASEKTCS
Sbjct: 121 DRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFSRMTDSGDRNYRALASASEKTCS 180

Query: 181 FESTRKVMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIVDISNTYCTQWPTLLEALA 240
           FESTRKVMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHI+DISNTYCTQWPTLLEALA
Sbjct: 181 FESTRKVMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDISNTYCTQWPTLLEALA 240

Query: 241 TRTDDTPHLRLTTVVTTKPSGGTGAAASQKVMKEIGTRMEKFARLMGVPFKFNALYHSGD 300
           TRTDDTPHLRLTTVVTTKPSGGTG AASQKVMKEIGTRMEKFARLMGVPFKFNALYHSGD
Sbjct: 241 TRTDDTPHLRLTTVVTTKPSGGTGTAASQKVMKEIGTRMEKFARLMGVPFKFNALYHSGD 300

Query: 301 LSELDMAKLDIKEDEALAINCVGALRSVAAINNRRDFLISSFRSLRPRIITVIEEEADLD 360
           LSELDMAKLDIKEDEALAINCVGALRSVAAINNRRDFLISSFRSLRPRIITVIEEEADLD
Sbjct: 301 LSELDMAKLDIKEDEALAINCVGALRSVAAINNRRDFLISSFRSLRPRIITVIEEEADLD 360

Query: 361 VGVDGIEFMRGFQECLRWFRVYFETLDESFSRTSNERLMLERAAGRAIVDLVACSAAESV 420
           VGVDGIEFMRGFQECLRWFRVYFETLDESFSRTSNERLMLERAAGRAIVDLVACSAAESV
Sbjct: 361 VGVDGIEFMRGFQECLRWFRVYFETLDESFSRTSNERLMLERAAGRAIVDLVACSAAESV 420

Query: 421 ERRETASRWAQRLHGNGFGPVTFSDEVCDDVRALLRRYKEGWAMTQSSDVAGIFLTWKEQ 480
           ERRETASRWAQRLHGNGFGPVTFSDEVCDDVRALLRRYKEGWAMTQSSDVAGIFLTWKEQ
Sbjct: 421 ERRETASRWAQRLHGNGFGPVTFSDEVCDDVRALLRRYKEGWAMTQSSDVAGIFLTWKEQ 480

Query: 481 PVVWASAWRP 491
           PVVWASAWRP
Sbjct: 481 PVVWASAWRP 490

[Close]

BLAST of CsGy6G028340 vs. TrEMBL
Match: tr|M5VXS8|M5VXS8_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G220800 PE=3 SV=1)

HSP 1 Score: 672.2 bits (1733), Expect = 9.1e-190
Identity = 317/393 (80.66%), Postives = 366/393 (93.13%), Query Frame = 0


Query: 100 NFEFS-GRWAPDILLETARAISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFS 159
           NFE S G+WAP++LLETA+AI+D+NS+RVQQLMWMLNEL SPYGDTDQKL +YFLQALFS
Sbjct: 117 NFELSNGKWAPELLLETAKAIADKNSSRVQQLMWMLNELGSPYGDTDQKLTSYFLQALFS 176

Query: 160 RMTDSGDRNYRALASASEKTCSFESTRKVMLKFQEVSPWTTFGHVSCNGALIEALEGESK 219
           RMTDSGDR YR L SASEKTCSFESTRK++LKFQEVSPWTTFGHV+CNGA++EA +GE K
Sbjct: 177 RMTDSGDRCYRTLISASEKTCSFESTRKMVLKFQEVSPWTTFGHVACNGAIMEAFDGEPK 236

Query: 220 LHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTTKPSGGTGAAASQKVMKEIGTR 279
           LHI+DISNTYCTQWPTLLEALATRTD+TPHLRLTTVV T+ S G+G A +QKVMKEIG R
Sbjct: 237 LHIIDISNTYCTQWPTLLEALATRTDETPHLRLTTVVATRASDGSGGAPAQKVMKEIGAR 296

Query: 280 MEKFARLMGVPFKFNALYHSGDLSELDMAKLDIKEDEALAINCVGALRSVAAINNRRDFL 339
           MEKFARLMGVPFKFNA++HSGDLSEL++++LDI++DEALA+NCVG L S+ A+ NRRD+L
Sbjct: 297 MEKFARLMGVPFKFNAVHHSGDLSELNLSELDIRDDEALAVNCVGTLHSIQAVGNRRDYL 356

Query: 340 ISSFRSLRPRIITVIEEEADLDVGVDGIEFMRGFQECLRWFRVYFETLDESFSRTSNERL 399
           +S+FRSLRPRIIT++EEEADLDVGVDG++F+ GFQECLRWFRVYFE LDESF+RTSNERL
Sbjct: 357 VSAFRSLRPRIITLVEEEADLDVGVDGLDFVHGFQECLRWFRVYFEALDESFARTSNERL 416

Query: 400 MLERAAGRAIVDLVACSAAESVERRETASRWAQRLHGNGFGPVTFSDEVCDDVRALLRRY 459
           MLERAAGRA+VDLVAC+ +ESVERRETA+RW++R+HG GF PVTFSDEVCDDVRALLRRY
Sbjct: 417 MLERAAGRAVVDLVACAPSESVERRETATRWSRRMHGAGFSPVTFSDEVCDDVRALLRRY 476

Query: 460 KEGWAMTQSSDV-AGIFLTWKEQPVVWASAWRP 491
           KEGWAMTQ S+  AGIFL+WK+QPVVWASAWRP
Sbjct: 477 KEGWAMTQCSEAGAGIFLSWKDQPVVWASAWRP 509

[Close]

BLAST of CsGy6G028340 vs. TrEMBL
Match: tr|A0A2I4FVU2|A0A2I4FVU2_9ROSI (protein SHORT-ROOT-like OS=Juglans regia OX=51240 GN=LOC109002462 PE=3 SV=1)

HSP 1 Score: 671.8 bits (1732), Expect = 1.2e-189
Identity = 323/403 (80.15%), Postives = 366/403 (90.82%), Query Frame = 0


Query: 89  QFSFLSPSPDFNFEFSGRWAPDILLETARAISDRNSARVQQLMWMLNELSSPYGDTDQKL 148
           +FSF SP+ DFNFEFSG+WA +ILLETARAI+++NS RVQ L WMLNELSSPYGDTDQKL
Sbjct: 90  EFSF-SPALDFNFEFSGKWAHEILLETARAIAEKNSTRVQHLTWMLNELSSPYGDTDQKL 149

Query: 149 AAYFLQALFSRMTDSGDRNYRALASASEKTCSFESTRKVMLKFQEVSPWTTFGHVSCNGA 208
           AA+FLQALFSRMTDSGDR YR LASASEKTCSFESTRK++LKFQEVSPWTTFGHV+CNGA
Sbjct: 150 AAHFLQALFSRMTDSGDRCYRTLASASEKTCSFESTRKMVLKFQEVSPWTTFGHVACNGA 209

Query: 209 LIEALEGESKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTTKPSGGT-GAAA 268
           ++EA EGE KLHIVD SNTYCTQWPTLLEALATR+D+TPHLRLTTVV TK SG T G AA
Sbjct: 210 IMEAFEGEPKLHIVDFSNTYCTQWPTLLEALATRSDETPHLRLTTVVATKSSGSTGGVAA 269

Query: 269 SQKVMKEIGTRMEKFARLMGVPFKFNALYHSGDLSELDMAKLDIKEDEALAINCVGALRS 328
            QKVMKEIG+RMEKFARLMGVPFKFN ++H GDLS+L+  KLD+K+DEALAINCVG L S
Sbjct: 270 VQKVMKEIGSRMEKFARLMGVPFKFNVIHHGGDLSDLNTEKLDLKDDEALAINCVGTLHS 329

Query: 329 VAAINNRRDFLISSFRSLRPRIITVIEEEADLDVGVDGIEFMRGFQECLRWFRVYFETLD 388
           +  + NRRD+LIS+FR L+PRI+TV+EEEADLDVGVDG+EF++GF+ECLRWFRVYFE LD
Sbjct: 330 ITPVRNRRDYLISAFRRLQPRIVTVVEEEADLDVGVDGLEFVKGFEECLRWFRVYFEALD 389

Query: 389 ESFSRTSNERLMLERAAGRAIVDLVACSAAESVERRETASRWAQRLHGNGFGPVTFSDEV 448
           ESF RTSNERLMLER AGRAIVDLVAC  +ESVERRE+A  W++RLH  GFGPV++SDEV
Sbjct: 390 ESFPRTSNERLMLEREAGRAIVDLVACPPSESVERRESAVCWSRRLHACGFGPVSYSDEV 449

Query: 449 CDDVRALLRRYKEGWAMTQSSDVAGIFLTWKEQPVVWASAWRP 491
           CDDVRALLRRYKEGW+MTQ SDVAGIFL+WK+QPVVWAS+WRP
Sbjct: 450 CDDVRALLRRYKEGWSMTQCSDVAGIFLSWKDQPVVWASSWRP 491

[Close]

BLAST of CsGy6G028340 vs. TrEMBL
Match: tr|F6HSS8|F6HSS8_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_07s0129g00030 PE=3 SV=1)

HSP 1 Score: 669.8 bits (1727), Expect = 4.5e-189
Identity = 328/406 (80.79%), Postives = 369/406 (90.89%), Query Frame = 0


Query: 89  QFSFLSPSPDFNFEF----SGRWAPDILLETARAISDRNSARVQQLMWMLNELSSPYGDT 148
           +FSF SP+ D + EF    SG+WA +ILLETARAI+D+NSARVQQLMWMLNELSSPYGDT
Sbjct: 92  EFSF-SPARDLHLEFNSSASGKWASEILLETARAIADKNSARVQQLMWMLNELSSPYGDT 151

Query: 149 DQKLAAYFLQALFSRMTDSGDRNYRALASASEKTCSFESTRKVMLKFQEVSPWTTFGHVS 208
           DQKLAAYFLQALFSRMTDSG+R YR L SASEKTCSFESTRK++LKFQEVSPWTTFGHV+
Sbjct: 152 DQKLAAYFLQALFSRMTDSGERCYRTLISASEKTCSFESTRKMVLKFQEVSPWTTFGHVA 211

Query: 209 CNGALIEALEGESKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTTKPSGGTG 268
           CNGA++EALEGESKLHI+DISNTYCTQWPTLLEALATRTD+TPHLRLTTVVT+K +G  G
Sbjct: 212 CNGAIMEALEGESKLHIIDISNTYCTQWPTLLEALATRTDETPHLRLTTVVTSK-AGTGG 271

Query: 269 AAASQKVMKEIGTRMEKFARLMGVPFKFNALYHSGDLSELDMAKLDIKEDEALAINCVGA 328
            A  QK+MKEIG RMEKFARLMGVPFKFN L+HSGDLS L++A+LDIK+DEALA+NCVGA
Sbjct: 272 MAPVQKLMKEIGNRMEKFARLMGVPFKFNVLHHSGDLSHLNLAELDIKDDEALAVNCVGA 331

Query: 329 LRSVAAINNRRDFLISSFRSLRPRIITVIEEEADLDVGVDGIEFMRGFQECLRWFRVYFE 388
           L SV A  NRRD ++SSFR L PRIITV+EEEADLDVGVDG +F++GFQECLRWFRVY E
Sbjct: 332 LHSVTAFGNRRDIVVSSFRRLHPRIITVVEEEADLDVGVDGFDFVKGFQECLRWFRVYLE 391

Query: 389 TLDESFSRTSNERLMLERAAGRAIVDLVACSAAESVERRETASRWAQRLHGNGFGPVTFS 448
           +LDESF RTSNERLMLERAAGRAIVDLVAC  +ES+ERRETA+RW+QRLH +GF PV+FS
Sbjct: 392 SLDESFPRTSNERLMLERAAGRAIVDLVACPPSESIERRETATRWSQRLHASGFSPVSFS 451

Query: 449 DEVCDDVRALLRRYKEGWAMTQSSDVAGIFLTWKEQPVVWASAWRP 491
           DEVCDDVRALLRRYKEGW+MTQSSD AGIFL+WK+QPVVW SAW+P
Sbjct: 452 DEVCDDVRALLRRYKEGWSMTQSSD-AGIFLSWKDQPVVWTSAWKP 494

The following BLAST results are available for this feature:

BLAST of CsGy6G028340 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004141867.1	1.0e-232	100.00	PREDICTED: protein SHORT-ROOT-like [Cucumis sativus] >KGN48608.1 hypothetical pr...	[more]
XP_008440387.1	3.8e-232	99.59	PREDICTED: protein SHORT-ROOT [Cucumis melo]	[more]
XP_022979035.1	7.5e-220	93.07	protein SHORT-ROOT-like [Cucurbita maxima]	[more]
XP_023543503.1	1.7e-219	93.32	protein SHORT-ROOT-like [Cucurbita pepo subsp. pepo]	[more]
XP_022949653.1	2.2e-219	93.32	protein SHORT-ROOT-like [Cucurbita moschata]	[more]

BLAST of CsGy6G028340 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G37650.1	8.1e-160	67.57	GRAS family transcription factor	[more]
AT2G04890.1	2.5e-52	31.25	SCARECROW-like 21	[more]
AT3G49950.1	8.9e-50	30.79	GRAS family transcription factor	[more]
AT1G50600.1	1.3e-48	30.57	scarecrow-like 5	[more]
AT5G48150.1	1.3e-48	29.24	GRAS family transcription factor	[more]

BLAST of CsGy6G028340 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SZF7\|SHR_ARATH	1.5e-158	67.57	Protein SHORT-ROOT OS=Arabidopsis thaliana OX=3702 GN=SHR PE=1 SV=1	[more]
sp\|Q75I13\|SHR2_ORYSJ	2.9e-130	56.57	Protein SHORT-ROOT 2 OS=Oryza sativa subsp. japonica OX=39947 GN=SHR2 PE=1 SV=1	[more]
sp\|A2XIA8\|SHR2_ORYSI	6.4e-130	56.34	Protein SHORT-ROOT 2 OS=Oryza sativa subsp. indica OX=39946 GN=SHR2 PE=3 SV=1	[more]
sp\|A2YN56\|SHR1_ORYSI	5.4e-129	57.63	Protein SHORT-ROOT 1 OS=Oryza sativa subsp. indica OX=39946 GN=SHR1 PE=3 SV=1	[more]
sp\|Q8H2X8\|SHR1_ORYSJ	7.0e-129	57.63	Protein SHORT-ROOT 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SHR1 PE=1 SV=2	[more]

BLAST of CsGy6G028340 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KGH6\|A0A0A0KGH6_CUCSA	6.6e-233	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G495620 PE=3 SV=1	[more]
tr\|A0A1S3B100\|A0A1S3B100_CUCME	2.5e-232	99.59	protein SHORT-ROOT OS=Cucumis melo OX=3656 GN=LOC103484850 PE=3 SV=1	[more]
tr\|M5VXS8\|M5VXS8_PRUPE	9.1e-190	80.66	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G220800 PE=3 SV=1	[more]
tr\|A0A2I4FVU2\|A0A2I4FVU2_9ROSI	1.2e-189	80.15	protein SHORT-ROOT-like OS=Juglans regia OX=51240 GN=LOC109002462 PE=3 SV=1	[more]
tr\|F6HSS8\|F6HSS8_VITVI	4.5e-189	80.79	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_07s0129g00030 PE=3 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003700	transcription factor activity, sequence-specific DNA binding
GO:0043565	sequence-specific DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0008356	asymmetric cell division
GO:0009956	radial pattern formation
GO:0048366	leaf development

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **INTERPRO**
Term	Definition
IPR030019	Short-root
IPR005202	TF_GRAS

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008356	asymmetric cell division
biological_process	GO:0048366	leaf development
biological_process	GO:0009956	radial pattern formation
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G028340.1	CsGy6G028340.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005202	Transcription factor GRAS	PFAM	PF03514	GRAS	coord: 111..489 e-value: 6.7E-105 score: 351.0
IPR005202	Transcription factor GRAS	PROSITE	PS50985	GRAS	coord: 99..489 score: 72.838
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..89
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..75
None	No IPR available	PANTHER	PTHR31636	FAMILY NOT NAMED	coord: 1..490
IPR030019	Protein short-root	PANTHER	PTHR31636:SF9	PROTEIN SHORT-ROOT	coord: 1..490

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy6G028340	Cla014025	Watermelon (97103) v1	cgybwmB468
CsGy6G028340	Csa6G495620	Cucumber (Chinese Long) v2	cgybcuB281
CsGy6G028340	MELO3C007630	Melon (DHL92) v3.5.1	cgybmeB444
CsGy6G028340	ClCG01G017540	Watermelon (Charleston Gray)	cgybwcgB399
CsGy6G028340	CSPI06G28870	Wild cucumber (PI 183967)	cgybcpiB287
CsGy6G028340	CmaCh07G006500	Cucurbita maxima (Rimu)	cgybcmaB861
CsGy6G028340	CmaCh03G009180	Cucurbita maxima (Rimu)	cgybcmaB831
CsGy6G028340	CmoCh07G006610	Cucurbita moschata (Rifu)	cgybcmoB843
CsGy6G028340	Lsi01G008970	Bottle gourd (USVL1VR-Ls)	cgyblsiB398
CsGy6G028340	Cp4.1LG19g10730	Cucurbita pepo (Zucchini)	cgybcpeB810
CsGy6G028340	Cp4.1LG10g02020	Cucurbita pepo (Zucchini)	cgybcpeB710
CsGy6G028340	MELO3C007630.2	Melon (DHL92) v3.6.1	cgybmedB440
CsGy6G028340	CsaV3_6G044080	Cucumber (Chinese Long) v3	cgybcucB298
CsGy6G028340	Cla97C01G016710	Watermelon (97103) v2	cgybwmbB394
CsGy6G028340	Bhi03G000788	Wax gourd	cgybwgoB591
CsGy6G028340	Carg18551	Silver-seed gourd	carcgybB0003
CsGy6G028340	Carg00792	Silver-seed gourd	carcgybB0418

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy6G028340	Cucumber (Gy14) v2	cgybcgybB064
CsGy6G028340	Cucumber (Gy14) v2	cgybcgybB129
CsGy6G028340	Cucurbita maxima (Rimu)	cgybcmaB699
CsGy6G028340	Cucurbita maxima (Rimu)	cgybcmaB715
CsGy6G028340	Cucurbita maxima (Rimu)	cgybcmaB750
CsGy6G028340	Cucurbita maxima (Rimu)	cgybcmaB816
CsGy6G028340	Cucurbita maxima (Rimu)	cgybcmaB843
CsGy6G028340	Cucurbita moschata (Rifu)	cgybcmoB682
CsGy6G028340	Cucurbita moschata (Rifu)	cgybcmoB699
CsGy6G028340	Cucurbita moschata (Rifu)	cgybcmoB732
CsGy6G028340	Cucurbita moschata (Rifu)	cgybcmoB795
CsGy6G028340	Cucurbita moschata (Rifu)	cgybcmoB811
CsGy6G028340	Cucurbita moschata (Rifu)	cgybcmoB822
CsGy6G028340	Cucurbita pepo (Zucchini)	cgybcpeB747
CsGy6G028340	Cucurbita pepo (Zucchini)	cgybcpeB772
CsGy6G028340	Cucurbita pepo (Zucchini)	cgybcpeB805
CsGy6G028340	Cucurbita pepo (Zucchini)	cgybcpeB870
CsGy6G028340	Cucurbita pepo (Zucchini)	cgybcpeB876
CsGy6G028340	Cucumber (Chinese Long) v2	cgybcuB249
CsGy6G028340	Cucumber (Chinese Long) v2	cgybcuB269
CsGy6G028340	Bottle gourd (USVL1VR-Ls)	cgyblsiB425
CsGy6G028340	Bottle gourd (USVL1VR-Ls)	cgyblsiB441
CsGy6G028340	Melon (DHL92) v3.5.1	cgybmeB412
CsGy6G028340	Melon (DHL92) v3.5.1	cgybmeB443
CsGy6G028340	Melon (DHL92) v3.6.1	cgybmedB410
CsGy6G028340	Melon (DHL92) v3.6.1	cgybmedB439
CsGy6G028340	Watermelon (Charleston Gray)	cgybwcgB432
CsGy6G028340	Watermelon (Charleston Gray)	cgybwcgB461
CsGy6G028340	Watermelon (97103) v1	cgybwmB432
CsGy6G028340	Wild cucumber (PI 183967)	cgybcpiB257
CsGy6G028340	Wild cucumber (PI 183967)	cgybcpiB276
CsGy6G028340	Silver-seed gourd	carcgybB0388
CsGy6G028340	Cucumber (Chinese Long) v3	cgybcucB262
CsGy6G028340	Cucumber (Chinese Long) v3	cgybcucB284
CsGy6G028340	Watermelon (97103) v2	cgybwmbB470
CsGy6G028340	Wax gourd	cgybwgoB548