Carg18551 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg18551
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	protein SHORT-ROOT
Location	Cucurbita_argyrosperma_scaffold_109 : 400802 .. 402280 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATACCTTGTTTCGGCTTGTCAATCTTCAGTCCGAACAATCTTACAACTCCAGTAGAAGTAGAACCAATTCTAGCAGCTCCAGATCGTCTAGACAAAACCAATATCATTACCATCAACAGGAAGACGAAGAATGCTACAACGTTCTCATGGATGAGGAAGATTTCTCATCGTCTAGTAATTCTAGACAATACTACAATCCTTACCTTCCCAACCCATCTTCCACCGTCTGCACCACGCCCACCGCCACCACCCCAACCCCGATCGATCAATTCTCATTCGTCTCCCCCGCTCCGGATTTCAACTTCGAATTTTCCGGCAGGTGGGCCCCTGATATTCTCCTGGAAACCGCCAGGGCCATTTCTGACAGGAATAGTGCTCGTGTTCAGCAGCTGATGTGGATGCTAAACGAACTTAGCTCCCCCTATGGGGATACGGATCAAAAGCTAGCTGCCTATTTCCTGCAGGCCTTGTTTACCCGCATGACTGATTCCGGCGACCGTAATTATCGCGCTTTGTCCTCCGCCTCAGAGAAATCATGCTCATTCGAATCAACTAGGAAAATGATGCTCAAGTTTCAGGAGGTTAGTCCCTGGACCACTTTTGGGCATGTTTCTTGCAATGGCGCATTAATTGAAGCCTTAGAAGGCGAATCAAAGCTACACATAATCGATATCAGTAACACGTATTGCACTCAGTGGCCCACTTTGCTAGAAGCCCTCGCGACTCGTACCGACGATACGCCCCACCTACGCCTCACAACTGTCGTCATCACTAAGCCCGGCGATGGAAGTGGAGTAGCCGCATCTCAAAAAGTAATGAAGGAAATAGGTACAAGAATGGAAAAGTTCGCTAGGCTTATGGGCGTACCTTTCAAATTCCACACGCTATACCATTCCGGTGACCTTTCAGATTTGGACTTGGCGAAATTAGACATCAAAGAAGACGAGGCACTCGCCGTCAACTGCATCGGAGCGTTACATTCCGTGGCGGCAGTTGATAACCGCCGAGATTTCTTGATTGCATCTTTCCGCAGTTTACGGCCGCGGATAATCACAGTGATAGAAGAGGAAGCCGACCTCGACGTAGGCGTCGATGGGATTGAATTTCTGAGTGGGTTCCAAGAATGTCTGCGTTGGTTTAGGGTTTACTTCGAGACATTGGACGAGAGTTTCACGAGGACAAGCAACGAGCGGTTGATGCTTGAGAGAGCAGCCGGTAGGGCAATCGTGGACCTGGTGGCTTGCTCGGCAGCGGAGTCGGTGGAGAGAAGGGAATCGGCAGCGCGGTGGGCACAGCGGTTGCATGGAAGCGGTTTCAGTCCGCTGATATTCAGCGACGAAGTATGCGACGACGTAAGGGCACTATTGAGGAGGTACAAGGAAGGGTGGGCAATGACACAGAGCTCGGACGTCGCCGGAATATTCTTGACGTGGAAAGAGCAGCCGGTGGTGTGGGCCAGTGCATGGAAACCTTGA

mRNA sequence

ATGGATACCTTGTTTCGGCTTGTCAATCTTCAGTCCGAACAATCTTACAACTCCAGTAGAAGTAGAACCAATTCTAGCAGCTCCAGATCGTCTAGACAAAACCAATATCATTACCATCAACAGGAAGACGAAGAATGCTACAACGTTCTCATGGATGAGGAAGATTTCTCATCGTCTAGTAATTCTAGACAATACTACAATCCTTACCTTCCCAACCCATCTTCCACCGTCTGCACCACGCCCACCGCCACCACCCCAACCCCGATCGATCAATTCTCATTCGTCTCCCCCGCTCCGGATTTCAACTTCGAATTTTCCGGCAGGTGGGCCCCTGATATTCTCCTGGAAACCGCCAGGGCCATTTCTGACAGGAATAGTGCTCGTGTTCAGCAGCTGATGTGGATGCTAAACGAACTTAGCTCCCCCTATGGGGATACGGATCAAAAGCTAGCTGCCTATTTCCTGCAGGCCTTGTTTACCCGCATGACTGATTCCGGCGACCGTAATTATCGCGCTTTGTCCTCCGCCTCAGAGAAATCATGCTCATTCGAATCAACTAGGAAAATGATGCTCAAGTTTCAGGAGGTTAGTCCCTGGACCACTTTTGGGCATGTTTCTTGCAATGGCGCATTAATTGAAGCCTTAGAAGGCGAATCAAAGCTACACATAATCGATATCAGTAACACGTATTGCACTCAGTGGCCCACTTTGCTAGAAGCCCTCGCGACTCGTACCGACGATACGCCCCACCTACGCCTCACAACTGTCGTCATCACTAAGCCCGGCGATGGAAGTGGAGTAGCCGCATCTCAAAAAGTAATGAAGGAAATAGGTACAAGAATGGAAAAGTTCGCTAGGCTTATGGGCGTACCTTTCAAATTCCACACGCTATACCATTCCGGTGACCTTTCAGATTTGGACTTGGCGAAATTAGACATCAAAGAAGACGAGGCACTCGCCGTCAACTGCATCGGAGCGTTACATTCCGTGGCGGCAGTTGATAACCGCCGAGATTTCTTGATTGCATCTTTCCGCAGTTTACGGCCGCGGATAATCACAGTGATAGAAGAGGAAGCCGACCTCGACGTAGGCGTCGATGGGATTGAATTTCTGAGTGGGTTCCAAGAATGTCTGCGTTGGTTTAGGGTTTACTTCGAGACATTGGACGAGAGTTTCACGAGGACAAGCAACGAGCGGTTGATGCTTGAGAGAGCAGCCGGTAGGGCAATCGTGGACCTGGTGGCTTGCTCGGCAGCGGAGTCGGTGGAGAGAAGGGAATCGGCAGCGCGGTGGGCACAGCGGTTGCATGGAAGCGGTTTCAGTCCGCTGATATTCAGCGACGAAGTATGCGACGACGTAAGGGCACTATTGAGGAGGTACAAGGAAGGGTGGGCAATGACACAGAGCTCGGACGTCGCCGGAATATTCTTGACGTGGAAAGAGCAGCCGGTGGTGTGGGCCAGTGCATGGAAACCTTGA

Coding sequence (CDS)

ATGGATACCTTGTTTCGGCTTGTCAATCTTCAGTCCGAACAATCTTACAACTCCAGTAGAAGTAGAACCAATTCTAGCAGCTCCAGATCGTCTAGACAAAACCAATATCATTACCATCAACAGGAAGACGAAGAATGCTACAACGTTCTCATGGATGAGGAAGATTTCTCATCGTCTAGTAATTCTAGACAATACTACAATCCTTACCTTCCCAACCCATCTTCCACCGTCTGCACCACGCCCACCGCCACCACCCCAACCCCGATCGATCAATTCTCATTCGTCTCCCCCGCTCCGGATTTCAACTTCGAATTTTCCGGCAGGTGGGCCCCTGATATTCTCCTGGAAACCGCCAGGGCCATTTCTGACAGGAATAGTGCTCGTGTTCAGCAGCTGATGTGGATGCTAAACGAACTTAGCTCCCCCTATGGGGATACGGATCAAAAGCTAGCTGCCTATTTCCTGCAGGCCTTGTTTACCCGCATGACTGATTCCGGCGACCGTAATTATCGCGCTTTGTCCTCCGCCTCAGAGAAATCATGCTCATTCGAATCAACTAGGAAAATGATGCTCAAGTTTCAGGAGGTTAGTCCCTGGACCACTTTTGGGCATGTTTCTTGCAATGGCGCATTAATTGAAGCCTTAGAAGGCGAATCAAAGCTACACATAATCGATATCAGTAACACGTATTGCACTCAGTGGCCCACTTTGCTAGAAGCCCTCGCGACTCGTACCGACGATACGCCCCACCTACGCCTCACAACTGTCGTCATCACTAAGCCCGGCGATGGAAGTGGAGTAGCCGCATCTCAAAAAGTAATGAAGGAAATAGGTACAAGAATGGAAAAGTTCGCTAGGCTTATGGGCGTACCTTTCAAATTCCACACGCTATACCATTCCGGTGACCTTTCAGATTTGGACTTGGCGAAATTAGACATCAAAGAAGACGAGGCACTCGCCGTCAACTGCATCGGAGCGTTACATTCCGTGGCGGCAGTTGATAACCGCCGAGATTTCTTGATTGCATCTTTCCGCAGTTTACGGCCGCGGATAATCACAGTGATAGAAGAGGAAGCCGACCTCGACGTAGGCGTCGATGGGATTGAATTTCTGAGTGGGTTCCAAGAATGTCTGCGTTGGTTTAGGGTTTACTTCGAGACATTGGACGAGAGTTTCACGAGGACAAGCAACGAGCGGTTGATGCTTGAGAGAGCAGCCGGTAGGGCAATCGTGGACCTGGTGGCTTGCTCGGCAGCGGAGTCGGTGGAGAGAAGGGAATCGGCAGCGCGGTGGGCACAGCGGTTGCATGGAAGCGGTTTCAGTCCGCTGATATTCAGCGACGAAGTATGCGACGACGTAAGGGCACTATTGAGGAGGTACAAGGAAGGGTGGGCAATGACACAGAGCTCGGACGTCGCCGGAATATTCTTGACGTGGAAAGAGCAGCCGGTGGTGTGGGCCAGTGCATGGAAACCTTGA

Protein sequence

MDTLFRLVNLQSEQSYNSSRSRTNSSSSRSSRQNQYHYHQQEDEECYNVLMDEEDFSSSSNSRQYYNPYLPNPSSTVCTTPTATTPTPIDQFSFVSPAPDFNFEFSGRWAPDILLETARAISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFTRMTDSGDRNYRALSSASEKSCSFESTRKMMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVITKPGDGSGVAASQKVMKEIGTRMEKFARLMGVPFKFHTLYHSGDLSDLDLAKLDIKEDEALAVNCIGALHSVAAVDNRRDFLIASFRSLRPRIITVIEEEADLDVGVDGIEFLSGFQECLRWFRVYFETLDESFTRTSNERLMLERAAGRAIVDLVACSAAESVERRESAARWAQRLHGSGFSPLIFSDEVCDDVRALLRRYKEGWAMTQSSDVAGIFLTWKEQPVVWASAWKP

Homology

[Close]

BLAST of Carg18551 vs. NCBI nr
Match: XP_022962666.1 (protein SHORT-ROOT-like [Cucurbita moschata])

HSP 1 Score: 847.4 bits (2188), Expect = 2.4e-242
Identity = 479/492 (97.36%), Postives = 479/492 (97.36%), Query Frame = 0


Query: 1   MDTLFRLVNLQSEQSYNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MDTLFRLVNLQSEQSYNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MDTLFRLVNLQSEQSYNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXQYYNPYLPNPSSTVCTTPTATTPTPIDQFSFVSPAPDFNFEFSGRWAPDILLETARA 120
           XXX YYNPYLPNPSSTV           IDQFSFVSPAPDFNFEFSGRWAPDILLETARA
Sbjct: 61  XXXXYYNPYLPNPSSTVSXXXXXXXXXXIDQFSFVSPAPDFNFEFSGRWAPDILLETARA 120

Query: 121 ISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFTRMTDSGDRNYRALSSASEKS 180
           ISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFTRMTDSGDRNYRALSSASEKS
Sbjct: 121 ISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFTRMTDSGDRNYRALSSASEKS 180

Query: 181 CSFESTRKMMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDISNTYCTQWPTLLEA 240
           CSFESTRKMMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDISNTYCTQWPTLLEA
Sbjct: 181 CSFESTRKMMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDISNTYCTQWPTLLEA 240

Query: 241 LATRTDDTPHLRLTTVVITKPGDGSGVAASQKVMKEIGTRMEKFARLMGVPFKFHTLYHS 300
           LATRTDDTPHLRLTTVVITKPGDGSGVAASQKVMKEIGTRMEKFARLMGVPFKFHTLYHS
Sbjct: 241 LATRTDDTPHLRLTTVVITKPGDGSGVAASQKVMKEIGTRMEKFARLMGVPFKFHTLYHS 300

Query: 301 GDLSDLDLAKLDIKEDEALAVNCIGALHSVAAVDNRRDFLIASFRSLRPRIITVIEEEAD 360
           GDLSDLDLAKLDIKEDEALAVNCIGAL SVAAVDNRRDFLIASFRSLRPRIITVIEEEAD
Sbjct: 301 GDLSDLDLAKLDIKEDEALAVNCIGALRSVAAVDNRRDFLIASFRSLRPRIITVIEEEAD 360

Query: 361 LDVGVDGIEFLSGFQECLRWFRVYFETLDESFTRTSNERLMLERAAGRAIVDLVACSAAE 420
           LDVGVDGIEFLSGFQECLRWFRVYFETLDESFTRTSNERLMLERAAGRAIVDLVACSAAE
Sbjct: 361 LDVGVDGIEFLSGFQECLRWFRVYFETLDESFTRTSNERLMLERAAGRAIVDLVACSAAE 420

Query: 421 SVERRESAARWAQRLHGSGFSPLIFSDEVCDDVRALLRRYKEGWAMTQSSDVAGIFLTWK 480
           SVERRESAARWAQRLHGSGFSPLIFSDEVCDDVRALLRRYKEGWAMTQSSDVAGIFLTWK
Sbjct: 421 SVERRESAARWAQRLHGSGFSPLIFSDEVCDDVRALLRRYKEGWAMTQSSDVAGIFLTWK 480

Query: 481 EQPVVWASAWKP 493
           EQPVVWASAWKP
Sbjct: 481 EQPVVWASAWKP 492

[Close]

BLAST of Carg18551 vs. NCBI nr
Match: XP_023003798.1 (protein SHORT-ROOT-like [Cucurbita maxima] >XP_023517414.1 protein SHORT-ROOT-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 846.3 bits (2185), Expect = 5.3e-242
Identity = 478/492 (97.15%), Postives = 479/492 (97.36%), Query Frame = 0


Query: 1   MDTLFRLVNLQSEQSYNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MDTLFRLVNLQSEQSYNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MDTLFRLVNLQSEQSYNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXQYYNPYLPNPSSTVCTTPTATTPTPIDQFSFVSPAPDFNFEFSGRWAPDILLETARA 120
           XXX YYNPYLPNPSSTV           IDQFSFVSPAPDFNFEFSGRWAPDILLETARA
Sbjct: 61  XXXXYYNPYLPNPSSTVXXXXXXXXXXXIDQFSFVSPAPDFNFEFSGRWAPDILLETARA 120

Query: 121 ISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFTRMTDSGDRNYRALSSASEKS 180
           ISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFTRMTDSGDRNYRALSSASEK+
Sbjct: 121 ISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFTRMTDSGDRNYRALSSASEKT 180

Query: 181 CSFESTRKMMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDISNTYCTQWPTLLEA 240
           CSFESTRKMMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDISNTYCTQWPTLLEA
Sbjct: 181 CSFESTRKMMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDISNTYCTQWPTLLEA 240

Query: 241 LATRTDDTPHLRLTTVVITKPGDGSGVAASQKVMKEIGTRMEKFARLMGVPFKFHTLYHS 300
           LATRTDDTPHLRLTTVVITKPGDGSGVAASQKVMKEIGTRMEKFARLMGVPFKFHTLYHS
Sbjct: 241 LATRTDDTPHLRLTTVVITKPGDGSGVAASQKVMKEIGTRMEKFARLMGVPFKFHTLYHS 300

Query: 301 GDLSDLDLAKLDIKEDEALAVNCIGALHSVAAVDNRRDFLIASFRSLRPRIITVIEEEAD 360
           GDLSDLDLAKLDIKEDEALAVNCIGAL SVAAVDNRRDFLIASFRSLRPRIITVIEEEAD
Sbjct: 301 GDLSDLDLAKLDIKEDEALAVNCIGALRSVAAVDNRRDFLIASFRSLRPRIITVIEEEAD 360

Query: 361 LDVGVDGIEFLSGFQECLRWFRVYFETLDESFTRTSNERLMLERAAGRAIVDLVACSAAE 420
           LDVGVDGIEFLSGFQECLRWFRVYFETLDESFTRTSNERLMLERAAGRAIVDLVACSAAE
Sbjct: 361 LDVGVDGIEFLSGFQECLRWFRVYFETLDESFTRTSNERLMLERAAGRAIVDLVACSAAE 420

Query: 421 SVERRESAARWAQRLHGSGFSPLIFSDEVCDDVRALLRRYKEGWAMTQSSDVAGIFLTWK 480
           SVERRESAARWAQRLHGSGFSPLIFSDEVCDDVRALLRRYKEGWAMTQSSDVAGIFLTWK
Sbjct: 421 SVERRESAARWAQRLHGSGFSPLIFSDEVCDDVRALLRRYKEGWAMTQSSDVAGIFLTWK 480

Query: 481 EQPVVWASAWKP 493
           EQPVVWASAWKP
Sbjct: 481 EQPVVWASAWKP 492

[Close]

BLAST of Carg18551 vs. NCBI nr
Match: XP_022949653.1 (protein SHORT-ROOT-like [Cucurbita moschata])

HSP 1 Score: 774.2 bits (1998), Expect = 2.6e-220
Identity = 437/492 (88.82%), Postives = 462/492 (93.90%), Query Frame = 0


Query: 1   MDTLFRLVNLQSEQSYNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MDTLFRLVNLQSEQSYN XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MDTLFRLVNLQSEQSYN-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXQYYNPYLPNPSSTVCTTPTATTPTPIDQFSFVSPAPDFNFEFSGRWAPDILLETARA 120
           XXX    PY P   ST        TPTPIDQFS+VSP+PD NFEFSGRWA DILLETARA
Sbjct: 61  XXXXXXXPYHPXXXST-------ATPTPIDQFSYVSPSPDINFEFSGRWAVDILLETARA 120

Query: 121 ISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFTRMTDSGDRNYRALSSASEKS 180
           IS+RNSARV QLMWMLNELSSPYGDTDQKLAAYFLQALF+RMTDSGDRNY AL+SASEK+
Sbjct: 121 ISERNSARVHQLMWMLNELSSPYGDTDQKLAAYFLQALFSRMTDSGDRNYCALASASEKT 180

Query: 181 CSFESTRKMMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDISNTYCTQWPTLLEA 240
           CSF+STRK+MLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDIS+TYCTQWPTLLEA
Sbjct: 181 CSFDSTRKVMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDISSTYCTQWPTLLEA 240

Query: 241 LATRTDDTPHLRLTTVVITKPGDGSGVAASQKVMKEIGTRMEKFARLMGVPFKFHTLYHS 300
           LATRTDDTPHLRLTT+V TKPG+G+GV+ASQKVMKEIGTRMEKFARLMGVPFKF  LYHS
Sbjct: 241 LATRTDDTPHLRLTTIVTTKPGNGTGVSASQKVMKEIGTRMEKFARLMGVPFKFSALYHS 300

Query: 301 GDLSDLDLAKLDIKEDEALAVNCIGALHSVAAVDNRRDFLIASFRSLRPRIITVIEEEAD 360
           GDLS+LD AKLDIKEDEALA+NC+GAL S+AA++NRRDFLI+SFRSLRPRIITVIEEEAD
Sbjct: 301 GDLSELDFAKLDIKEDEALAINCVGALRSIAAINNRRDFLISSFRSLRPRIITVIEEEAD 360

Query: 361 LDVGVDGIEFLSGFQECLRWFRVYFETLDESFTRTSNERLMLERAAGRAIVDLVACSAAE 420
           LDVGVDG EFL GFQECLRWFRVYFETLDESFTRTSNERLMLERAAGRAIVDLVACSAA+
Sbjct: 361 LDVGVDGTEFLRGFQECLRWFRVYFETLDESFTRTSNERLMLERAAGRAIVDLVACSAAD 420

Query: 421 SVERRESAARWAQRLHGSGFSPLIFSDEVCDDVRALLRRYKEGWAMTQSSDVAGIFLTWK 480
           SVERRESA RWAQRLHG+GFSP+ FSDEVCDDVRALLRRYKEGWAMTQ+SDVAGIFLTWK
Sbjct: 421 SVERRESAVRWAQRLHGNGFSPVTFSDEVCDDVRALLRRYKEGWAMTQNSDVAGIFLTWK 480

Query: 481 EQPVVWASAWKP 493
           EQPVVWASAW+P
Sbjct: 481 EQPVVWASAWRP 484

[Close]

BLAST of Carg18551 vs. NCBI nr
Match: XP_023543503.1 (protein SHORT-ROOT-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 773.5 bits (1996), Expect = 4.4e-220
Identity = 436/492 (88.62%), Postives = 462/492 (93.90%), Query Frame = 0


Query: 1   MDTLFRLVNLQSEQSYNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MDTLFRLVNLQSEQSYN XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MDTLFRLVNLQSEQSYN-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXQYYNPYLPNPSSTVCTTPTATTPTPIDQFSFVSPAPDFNFEFSGRWAPDILLETARA 120
           XXX    PY P   ST        TPTPIDQFS+VSP+PD NFEFSGRWA DILLETARA
Sbjct: 61  XXXXXXXPYHPXXXST-------ATPTPIDQFSYVSPSPDINFEFSGRWAVDILLETARA 120

Query: 121 ISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFTRMTDSGDRNYRALSSASEKS 180
           IS+RNSARV QLMWMLNELSSPYGDTDQKLAAYFLQALF+RMTDSGDRNY AL+SASEK+
Sbjct: 121 ISERNSARVHQLMWMLNELSSPYGDTDQKLAAYFLQALFSRMTDSGDRNYCALASASEKT 180

Query: 181 CSFESTRKMMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDISNTYCTQWPTLLEA 240
           CSF+STRK+MLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDIS+TYCTQWPTLLEA
Sbjct: 181 CSFDSTRKVMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDISSTYCTQWPTLLEA 240

Query: 241 LATRTDDTPHLRLTTVVITKPGDGSGVAASQKVMKEIGTRMEKFARLMGVPFKFHTLYHS 300
           LATRTDDTPHLRLTT+V TKPG+G+GV+ASQKVMKEIGTRMEKFARLMGVPFKF+ LYHS
Sbjct: 241 LATRTDDTPHLRLTTIVTTKPGNGTGVSASQKVMKEIGTRMEKFARLMGVPFKFNALYHS 300

Query: 301 GDLSDLDLAKLDIKEDEALAVNCIGALHSVAAVDNRRDFLIASFRSLRPRIITVIEEEAD 360
           GDLS+LD AKLDIKEDEALA+NC+GAL S+ A++NRRDFLI+SFRSLRPRIITVIEEEAD
Sbjct: 301 GDLSELDFAKLDIKEDEALAINCVGALRSITAINNRRDFLISSFRSLRPRIITVIEEEAD 360

Query: 361 LDVGVDGIEFLSGFQECLRWFRVYFETLDESFTRTSNERLMLERAAGRAIVDLVACSAAE 420
           LDVGVDG EFL GFQECLRWFRVYFETLDESFTRTSNERLMLERAAGRAIVDLVACSAA+
Sbjct: 361 LDVGVDGTEFLRGFQECLRWFRVYFETLDESFTRTSNERLMLERAAGRAIVDLVACSAAD 420

Query: 421 SVERRESAARWAQRLHGSGFSPLIFSDEVCDDVRALLRRYKEGWAMTQSSDVAGIFLTWK 480
           SVERRESA RWAQRLHG+GFSP+ FSDEVCDDVRALLRRYKEGWAMTQ+SDVAGIFLTWK
Sbjct: 421 SVERRESAVRWAQRLHGNGFSPVTFSDEVCDDVRALLRRYKEGWAMTQNSDVAGIFLTWK 480

Query: 481 EQPVVWASAWKP 493
           EQPVVWASAW+P
Sbjct: 481 EQPVVWASAWRP 484

[Close]

BLAST of Carg18551 vs. NCBI nr
Match: XP_022979035.1 (protein SHORT-ROOT-like [Cucurbita maxima])

HSP 1 Score: 771.5 bits (1991), Expect = 1.7e-219
Identity = 433/492 (88.01%), Postives = 462/492 (93.90%), Query Frame = 0


Query: 1   MDTLFRLVNLQSEQSYNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MDTLFRLVNLQSEQSYN XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MDTLFRLVNLQSEQSYN-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXQYYNPYLPNPSSTVCTTPTATTPTPIDQFSFVSPAPDFNFEFSGRWAPDILLETARA 120
           XXX    PY P   ST        TPTPIDQFS+VSP+PD NFEFSGRWA DILLETARA
Sbjct: 61  XXXXXXXPYHPXXXST-------ATPTPIDQFSYVSPSPDINFEFSGRWAVDILLETARA 120

Query: 121 ISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFTRMTDSGDRNYRALSSASEKS 180
           ISDRNS+RV QLMWMLNELSSPYGDTDQKLAAYFLQALF+RMTDSGDRNY AL+SASEK+
Sbjct: 121 ISDRNSSRVHQLMWMLNELSSPYGDTDQKLAAYFLQALFSRMTDSGDRNYCALASASEKT 180

Query: 181 CSFESTRKMMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDISNTYCTQWPTLLEA 240
           CSF+STRK+MLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDIS+TYCTQWPTLLEA
Sbjct: 181 CSFDSTRKVMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDISSTYCTQWPTLLEA 240

Query: 241 LATRTDDTPHLRLTTVVITKPGDGSGVAASQKVMKEIGTRMEKFARLMGVPFKFHTLYHS 300
           LATRTDDTPHLRLTT++ TKPG G+G++ASQKVMKEIGTRMEKFARLMGVPFKF+ LYHS
Sbjct: 241 LATRTDDTPHLRLTTIITTKPGTGTGISASQKVMKEIGTRMEKFARLMGVPFKFNALYHS 300

Query: 301 GDLSDLDLAKLDIKEDEALAVNCIGALHSVAAVDNRRDFLIASFRSLRPRIITVIEEEAD 360
           GDLS+LDLAKLDIKEDEALA+NC+GAL S+AA++NRRDFLI+SFRSLRPRIITVIEEEAD
Sbjct: 301 GDLSELDLAKLDIKEDEALAINCVGALRSIAAINNRRDFLISSFRSLRPRIITVIEEEAD 360

Query: 361 LDVGVDGIEFLSGFQECLRWFRVYFETLDESFTRTSNERLMLERAAGRAIVDLVACSAAE 420
           LDVGVDG +FL GFQECLRWFRVYFETLDESFTRTSNERLMLERAAGR+IVDLVACSAA+
Sbjct: 361 LDVGVDGTDFLRGFQECLRWFRVYFETLDESFTRTSNERLMLERAAGRSIVDLVACSAAD 420

Query: 421 SVERRESAARWAQRLHGSGFSPLIFSDEVCDDVRALLRRYKEGWAMTQSSDVAGIFLTWK 480
           SVERRESA RWAQRLHG+GF P+ FSDEVCDDVRALLRRYKEGWAMTQ+SDVAGIFLTWK
Sbjct: 421 SVERRESAVRWAQRLHGNGFGPVTFSDEVCDDVRALLRRYKEGWAMTQNSDVAGIFLTWK 480

Query: 481 EQPVVWASAWKP 493
           EQPVVWASAW+P
Sbjct: 481 EQPVVWASAWRP 484

[Close]

BLAST of Carg18551 vs. TAIR10
Match: AT4G37650.1 (GRAS family transcription factor)

HSP 1 Score: 550.1 bits (1416), Expect = 1.4e-156
Identity = 266/407 (65.36%), Postives = 331/407 (81.33%), Query Frame = 0


Query: 92  FSFVSPAPDFNFEFSGRWAPDILLETARAISDRNSARVQQLMWMLNELSSPYGDTDQKLA 151
           FS     P F+F  + +WA  +LLE ARA SD+++AR QQ++W LNELSSPYGDT+QKLA
Sbjct: 125 FSIPQTPPSFDFSANAKWADSVLLEAARAFSDKDTARAQQILWTLNELSSPYGDTEQKLA 184

Query: 152 AYFLQALFTRMTDSGDRNYRAL--SSASEKSCSFESTRKMMLKFQEVSPWTTFGHVSCNG 211
           +YFLQALF RMT SG+R YR +  ++A+EK+CSFESTRK +LKFQEVSPW TFGHV+ NG
Sbjct: 185 SYFLQALFNRMTGSGERCYRTMVTAAATEKTCSFESTRKTVLKFQEVSPWATFGHVAANG 244

Query: 212 ALIEALEGESKLHIIDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVITKPGDGSGVAA 271
           A++EA++GE+K+HI+DIS+T+CTQWPTLLEALATR+DDTPHLRLTTVV+      +   A
Sbjct: 245 AILEAVDGEAKIHIVDISSTFCTQWPTLLEALATRSDDTPHLRLTTVVVANK-FVNDQTA 304

Query: 272 SQKVMKEIGTRMEKFARLMGVPFKFHTLYHSGDLSDLDLAKLDIKEDEALAVNCIGALHS 331
           S ++MKEIG RMEKFARLMGVPFKF+ ++H GDLS+ DL +LD+K DE LA+NC+GA+H 
Sbjct: 305 SHRMMKEIGNRMEKFARLMGVPFKFNIIHHVGDLSEFDLNELDVKPDEVLAINCVGAMHG 364

Query: 332 VAAVDNRRDFLIASFRSLRPRIITVIEEEADL---DVGVDGIEFLSGFQECLRWFRVYFE 391
           +A+  + RD +I+SFR LRPRI+TV+EEEADL   + G    EFL GF ECLRWFRV FE
Sbjct: 365 IASRGSPRDAVISSFRRLRPRIVTVVEEEADLVGEEEGGFDDEFLRGFGECLRWFRVCFE 424

Query: 392 TLDESFTRTSNERLMLERAAGRAIVDLVACSAAESVERRESAARWAQRLHGSGFSPLIFS 451
           + +ESF RTSNERLMLERAAGRAIVDLVAC  ++S ERRE+A +W++R+  SGF  + +S
Sbjct: 425 SWEESFPRTSNERLMLERAAGRAIVDLVACEPSDSTERRETARKWSRRMRNSGFGAVGYS 484

Query: 452 DEVCDDVRALLRRYKEG-WAMTQSSDVAGIFLTWKEQPVVWASAWKP 493
           DEV DDVRALLRRYKEG W+M Q  D AGIFL W++QPVVWASAW+P
Sbjct: 485 DEVADDVRALLRRYKEGVWSMVQCPDAAGIFLCWRDQPVVWASAWRP 530

[Close]

BLAST of Carg18551 vs. TAIR10
Match: AT2G04890.1 (SCARECROW-like 21)

HSP 1 Score: 211.1 bits (536), Expect = 1.6e-54
Identity = 124/384 (32.29%), Postives = 206/384 (53.65%), Query Frame = 0


Query: 113 ILLETARAISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFTRMTDSGDRNYRA 172
           +L+  A+A+S+ N    +  M  L  + S  G+  Q+L AY L+ L  R+  SG   Y++
Sbjct: 53  VLVACAKAVSENNLLMARWCMGELRGMVSISGEPIQRLGAYMLEGLVARLAASGSSIYKS 112

Query: 173 LSSASEKSCSFESTRKMMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDISNTYCT 232
           L S   +S  F S    +    EV P+  FG++S NGA+ EA++ E ++HIID      +
Sbjct: 113 LQSREPESYEFLS---YVYVLHEVCPYFKFGYMSANGAIAEAMKDEERIHIIDFQIGQGS 172

Query: 233 QWPTLLEALATRTDDTPHLRLTTVVITKPGDGSGVAASQKVMKEIGTRMEKFARLMGVPF 292
           QW  L++A A R    P++R+T V     GDGS       V+  +  R+EK A+   VPF
Sbjct: 173 QWIALIQAFAARPGGAPNIRITGV-----GDGS-------VLVTVKKRLEKLAKKFDVPF 232

Query: 293 KFHTLYHSGDLSDLDLAKLDIKEDEALAVNCIGALHSV----AAVDNRRDFLIASFRSLR 352
           +F+ +  S    ++++  LD+++ EAL VN    LH +     +++N RD L+   +SL 
Sbjct: 233 RFNAV--SRPSCEVEVENLDVRDGEALGVNFAYMLHHLPDESVSMENHRDRLLRMVKSLS 292

Query: 353 PRIITVIEEEADLDVGVDGIEFLSGFQECLRWFRVYFETLDESFTRTSNERLMLER-AAG 412
           P+++T++E+E + +       FL  F E L ++   FE++D    R   ER+ +E+    
Sbjct: 293 PKVVTLVEQECNTNTS----PFLPRFLETLSYYTAMFESIDVMLPRNHKERINIEQHCMA 352

Query: 413 RAIVDLVACSAAESVERRESAARWAQRLHGSGFSPLIFSDEVCDDVRALLRRYKEGWAMT 472
           R +V+++AC  AE +ER E   +W  R   +GF P   S  +   +RALLR Y  G+A+ 
Sbjct: 353 RDVVNIIACEGAERIERHELLGKWKSRFSMAGFEPYPLSSIISATIRALLRDYSNGYAIE 412

Query: 473 QSSDVAGIFLTWKEQPVVWASAWK 492
           +      ++L W ++ +V + AWK
Sbjct: 413 ERD--GALYLGWMDRILVSSCAWK 413

[Close]

BLAST of Carg18551 vs. TAIR10
Match: AT1G50600.1 (scarecrow-like 5)

HSP 1 Score: 198.0 bits (502), Expect = 1.4e-50
Identity = 120/384 (31.25%), Postives = 195/384 (50.78%), Query Frame = 0


Query: 113 ILLETARAISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFTRMTDSGDRNYRA 172
           +L E A+A+ + +      L+  L ++ S  G+  Q+L AY L+ L  R+  SG   Y+A
Sbjct: 230 VLYECAKAVENYDLEMTDWLISQLQQMVSVSGEPVQRLGAYMLEGLVARLASSGSSIYKA 289

Query: 173 LSSASEKSCSFESTRKMMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDISNTYCT 232
           L     K  +       M    E  P+  FG+ S NGA+ EA++ ES +HIID   +   
Sbjct: 290 LRC---KDPTGPELLTYMHILYEACPYFKFGYESANGAIAEAVKNESFVHIIDFQISQGG 349

Query: 233 QWPTLLEALATRTDDTPHLRLTTVVITKPGDGSGVAASQKVMKEIGTRMEKFARLMGVPF 292
           QW +L+ AL  R    P++R+T +      D     A Q  ++ +G R+ K A + GVPF
Sbjct: 350 QWVSLIRALGARPGGPPNVRITGI-----DDPRSSFARQGGLELVGQRLGKLAEMCGVPF 409

Query: 293 KFHTLYHSGDLSDLDLAKLDIKEDEALAVNCIGALHSV----AAVDNRRDFLIASFRSLR 352
           +FH    +   +++++ KL ++  EALAVN    LH +      V+N RD L+   + L 
Sbjct: 410 EFHGA--ALCCTEVEIEKLGVRNGEALAVNFPLVLHHMPDESVTVENHRDRLLRLVKHLS 469

Query: 353 PRIITVIEEEADLDVGVDGIEFLSGFQECLRWFRVYFETLDESFTRTSNERLMLER-AAG 412
           P ++T++E+EA+ +       FL  F E +  +   FE++D    R   ER+ +E+    
Sbjct: 470 PNVVTLVEQEANTNTA----PFLPRFVETMNHYLAVFESIDVKLARDHKERINVEQHCLA 529

Query: 413 RAIVDLVACSAAESVERRESAARWAQRLHGSGFSPLIFSDEVCDDVRALLRRYKEGWAMT 472
           R +V+L+AC   E  ER E   +W  R H +GF P   S  V   ++ LL  Y E + + 
Sbjct: 530 REVVNLIACEGVEREERHEPLGKWRSRFHMAGFKPYPLSSYVNATIKGLLESYSEKYTLE 589

Query: 473 QSSDVAGIFLTWKEQPVVWASAWK 492
           +      ++L WK QP++ + AW+
Sbjct: 590 ERD--GALYLGWKNQPLITSCAWR 597

[Close]

BLAST of Carg18551 vs. TAIR10
Match: AT5G48150.1 (GRAS family transcription factor)

HSP 1 Score: 196.4 bits (498), Expect = 4.0e-50
Identity = 115/383 (30.03%), Postives = 206/383 (53.79%), Query Frame = 0


Query: 114 LLETARAISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFTRMTDSGDRNYRAL 173
           L+  A+A+S+ +      +M  L ++ S  G+  Q+L AY L+ L  ++  SG   Y+AL
Sbjct: 123 LVSCAKAMSENDLMMAHSMMEKLRQMVSVSGEPIQRLGAYLLEGLVAQLASSGSSIYKAL 182

Query: 174 SSASEKSCSFESTRKMMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDISNTYCTQ 233
           +   E + S E    M + + EV P+  FG++S NGA+ EA++ E+++HIID      +Q
Sbjct: 183 NRCPEPA-STELLSYMHILY-EVCPYFKFGYMSANGAIAEAMKEENRVHIIDFQIGQGSQ 242

Query: 234 WPTLLEALATRTDDTPHLRLTTVVITKPGDGSGVAASQKVMKEIGTRMEKFARLMGVPFK 293
           W TL++A A R    P +R+T +      D +   A    +  +G R+ K A+   VPF+
Sbjct: 243 WVTLIQAFAARPGGPPRIRITGI-----DDMTSAYARGGGLSIVGNRLAKLAKQFNVPFE 302

Query: 294 FHTLYHSGDLSDLDLAKLDIKEDEALAVNCIGALHSV----AAVDNRRDFLIASFRSLRP 353
           F+++  S  +S++    L ++  EALAVN    LH +     + +N RD L+   +SL P
Sbjct: 303 FNSV--SVSVSEVKPKNLGVRPGEALAVNFAFVLHHMPDESVSTENHRDRLLRMVKSLSP 362

Query: 354 RIITVIEEEADLDVGVDGIEFLSGFQECLRWFRVYFETLDESFTRTSNERLMLER-AAGR 413
           +++T++E+E++ +       F   F E + ++   FE++D +  R   +R+ +E+    R
Sbjct: 363 KVVTLVEQESNTNTAA----FFPRFMETMNYYAAMFESIDVTLPRDHKQRINVEQHCLAR 422

Query: 414 AIVDLVACSAAESVERRESAARWAQRLHGSGFSPLIFSDEVCDDVRALLRRYKEGWAMTQ 473
            +V+++AC  A+ VER E   +W  R   +GF+P   S  V   +++LLR Y + + + +
Sbjct: 423 DVVNIIACEGADRVERHELLGKWRSRFGMAGFTPYPLSPLVNSTIKSLLRNYSDKYRLEE 482

Query: 474 SSDVAGIFLTWKEQPVVWASAWK 492
                 ++L W  + +V + AWK
Sbjct: 483 RD--GALYLGWMHRDLVASCAWK 490

[Close]

BLAST of Carg18551 vs. TAIR10
Match: AT3G49950.1 (GRAS family transcription factor)

HSP 1 Score: 188.7 bits (478), Expect = 8.4e-48
Identity = 125/414 (30.19%), Postives = 203/414 (49.03%), Query Frame = 0


Query: 94  FVSPAP-----DFNFEFSGRWAPDILLETARAISDRNSARVQQLMWMLNELSSPYGDTDQ 153
           F SP P     D NF         +LL  A AI   ++A   Q++W+LN ++ P GD+ Q
Sbjct: 12  FPSPKPLRGCGDANF------MEQLLLHCATAIDSNDAALTHQILWVLNNIAPPDGDSTQ 71

Query: 154 KLAAYFLQALFTRMTDSGDRNYRALSSASEKSCSFESTRKMMLKFQEVSPWTTFGHVSCN 213
           +L + FL+AL +R           +S   +       +   +  F +++PW  FG ++ N
Sbjct: 72  RLTSAFLRALLSRAVSKTPTLSSTISFLPQADELHRFSVVELAAFVDLTPWHRFGFIAAN 131

Query: 214 GALIEALEGESKLHIIDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVITKPGDGSGVA 273
            A++ A+EG S +HI+D+S T+C Q PTL++A+A+R +  P L   TVV +       + 
Sbjct: 132 AAILTAVEGYSTVHIVDLSLTHCMQIPTLIDAMASRLNKPPPLLKLTVVSSSDHFPPFIN 191

Query: 274 ASQKVMKEIGTRMEKFARLMGVPFKF---HTLYHSGDLSDLDLAKL-DIKEDEALAVNCI 333
            S    +E+G+++  FA    +  +F    + Y  G  S L   ++     +EAL VNC 
Sbjct: 192 IS---YEELGSKLVNFATTRNITMEFTIVPSTYSDGFSSLLQQLRIYPSSFNEALVVNCH 251

Query: 334 GALHSV------AAVDNRRDFLIASFRSLRPRIITVIEEEADLDVGVDGIEFLSGFQECL 393
             L  +      ++  + R   +   RSL PRI+T+IEE+ DL         ++  +   
Sbjct: 252 MMLRYIPEEPLTSSSSSLRTVFLKQLRSLNPRIVTLIEEDVDL----TSENLVNRLKSAF 311

Query: 394 RWFRVYFETLDESFTRTSNERLMLERAAGRAIVDLVACSAAESVERRESAARWAQRLHGS 453
            +F + F+T D   T  S +R   E      I ++VA   AE VER E+  RW +R+  +
Sbjct: 312 NYFWIPFDTTD---TFMSEQRRWYEAEISWKIENVVAKEGAERVERTETKRRWIERMREA 371

Query: 454 GFSPLIFSDEVCDDVRALLRRYKEGWAMTQSSDVAGIFLTWKEQPVVWASAWKP 493
            F  +   ++   DV+A+L  +  GW M +  D   + LTWK   VV+A+ W P
Sbjct: 372 EFGGVRVKEDAVADVKAMLEEHAVGWGMKKEDDDESLVLTWKGHSVVFATVWVP 409

[Close]

BLAST of Carg18551 vs. Swiss-Prot
Match: sp|Q9SZF7|SHR_ARATH (Protein SHORT-ROOT OS=Arabidopsis thaliana OX=3702 GN=SHR PE=1 SV=1)

HSP 1 Score: 550.1 bits (1416), Expect = 2.6e-155
Identity = 266/407 (65.36%), Postives = 331/407 (81.33%), Query Frame = 0


Query: 92  FSFVSPAPDFNFEFSGRWAPDILLETARAISDRNSARVQQLMWMLNELSSPYGDTDQKLA 151
           FS     P F+F  + +WA  +LLE ARA SD+++AR QQ++W LNELSSPYGDT+QKLA
Sbjct: 125 FSIPQTPPSFDFSANAKWADSVLLEAARAFSDKDTARAQQILWTLNELSSPYGDTEQKLA 184

Query: 152 AYFLQALFTRMTDSGDRNYRAL--SSASEKSCSFESTRKMMLKFQEVSPWTTFGHVSCNG 211
           +YFLQALF RMT SG+R YR +  ++A+EK+CSFESTRK +LKFQEVSPW TFGHV+ NG
Sbjct: 185 SYFLQALFNRMTGSGERCYRTMVTAAATEKTCSFESTRKTVLKFQEVSPWATFGHVAANG 244

Query: 212 ALIEALEGESKLHIIDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVITKPGDGSGVAA 271
           A++EA++GE+K+HI+DIS+T+CTQWPTLLEALATR+DDTPHLRLTTVV+      +   A
Sbjct: 245 AILEAVDGEAKIHIVDISSTFCTQWPTLLEALATRSDDTPHLRLTTVVVANK-FVNDQTA 304

Query: 272 SQKVMKEIGTRMEKFARLMGVPFKFHTLYHSGDLSDLDLAKLDIKEDEALAVNCIGALHS 331
           S ++MKEIG RMEKFARLMGVPFKF+ ++H GDLS+ DL +LD+K DE LA+NC+GA+H 
Sbjct: 305 SHRMMKEIGNRMEKFARLMGVPFKFNIIHHVGDLSEFDLNELDVKPDEVLAINCVGAMHG 364

Query: 332 VAAVDNRRDFLIASFRSLRPRIITVIEEEADL---DVGVDGIEFLSGFQECLRWFRVYFE 391
           +A+  + RD +I+SFR LRPRI+TV+EEEADL   + G    EFL GF ECLRWFRV FE
Sbjct: 365 IASRGSPRDAVISSFRRLRPRIVTVVEEEADLVGEEEGGFDDEFLRGFGECLRWFRVCFE 424

Query: 392 TLDESFTRTSNERLMLERAAGRAIVDLVACSAAESVERRESAARWAQRLHGSGFSPLIFS 451
           + +ESF RTSNERLMLERAAGRAIVDLVAC  ++S ERRE+A +W++R+  SGF  + +S
Sbjct: 425 SWEESFPRTSNERLMLERAAGRAIVDLVACEPSDSTERRETARKWSRRMRNSGFGAVGYS 484

Query: 452 DEVCDDVRALLRRYKEG-WAMTQSSDVAGIFLTWKEQPVVWASAWKP 493
           DEV DDVRALLRRYKEG W+M Q  D AGIFL W++QPVVWASAW+P
Sbjct: 485 DEVADDVRALLRRYKEGVWSMVQCPDAAGIFLCWRDQPVVWASAWRP 530

[Close]

BLAST of Carg18551 vs. Swiss-Prot
Match: sp|Q75I13|SHR2_ORYSJ (Protein SHORT-ROOT 2 OS=Oryza sativa subsp. japonica OX=39947 GN=SHR2 PE=1 SV=1)

HSP 1 Score: 466.5 bits (1199), Expect = 3.8e-130
Identity = 243/426 (57.04%), Postives = 304/426 (71.36%), Query Frame = 0


Query: 107 GRWAPDILLETARAISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFTRMTDSG 166
           GRWA  +L+E ARA++ R+S RVQQLMWMLNEL+SPYGD DQKLA+YFLQ LF R+T SG
Sbjct: 185 GRWAAQLLMECARAVAGRDSQRVQQLMWMLNELASPYGDVDQKLASYFLQGLFARLTTSG 244

Query: 167 DRNYRALSSASEKSCSFESTRKMMLKFQEVSPWTTFGHVSCNGALIEAL----------- 226
            R  R L++AS+++ SF+STR+  LKFQE+SPWT FGHV+ NGA++E+            
Sbjct: 245 PRTLRTLATASDRNASFDSTRRTALKFQELSPWTPFGHVAANGAILESFLEXXXXXXXXX 304

Query: 227 --------EGESKLHIIDISNTYCTQWPTLLEALATR-TDDTPHLRLTTVVITKPGDGSG 286
                       +LHI+D+SNT+CTQWPTLLEALATR +DDTPHL +TTVV T     + 
Sbjct: 305 XXXXXXXXXXXXRLHILDLSNTFCTQWPTLLEALATRSSDDTPHLSITTVVPT----AAP 364

Query: 287 VAASQKVMKEIGTRMEKFARLMGVPFKFHTLYHSGDLSDLDLAKLDIKE---DEALAVNC 346
            AA+Q+VM+EIG R+EKFARLMGVPF F  ++HSGDL+DLDLA LD++E     ALAVNC
Sbjct: 365 SAAAQRVMREIGQRLEKFARLMGVPFSFRAVHHSGDLADLDLAALDLREGGATAALAVNC 424

Query: 347 IGALHSVAAVDNRRDFLIASFRSLRPRIITVIEEEADL-----DVGVDG---IEFLSGFQ 406
           + AL  VA     RD  +AS R L PR++TV+EEEADL     D   +      F+  F 
Sbjct: 425 VNALRGVA---RGRDAFVASLRRLEPRVVTVVEEEADLAAPEADASSEADTDAAFVKVFG 484

Query: 407 ECLRWFRVYFETLDESFTRTSNERLMLERAAGRAIVDLVACSAAESVERRESAARWAQRL 466
           E LR+F  Y ++L+ESF +TSNERL LERA GRAIVDLV+C A++S ERRE+AA WA+R+
Sbjct: 485 EGLRFFSAYMDSLEESFPKTSNERLSLERAVGRAIVDLVSCPASQSAERRETAASWARRM 544

Query: 467 HGSGFSPLIFSDEVCDDVRALLRRYKEGWAMTQS---------SDVAGIFLTWKEQPVVW 493
             +GFSP  FS++V DDVR+LLRRYKEGW+M  +         +  AG FL WKEQPVVW
Sbjct: 545 RSAGFSPAAFSEDVADDVRSLLRRYKEGWSMRDAGGATDDAAGAAAAGAFLAWKEQPVVW 603

[Close]

BLAST of Carg18551 vs. Swiss-Prot
Match: sp|A2XIA8|SHR2_ORYSI (Protein SHORT-ROOT 2 OS=Oryza sativa subsp. indica OX=39946 GN=SHR2 PE=3 SV=1)

HSP 1 Score: 465.3 bits (1196), Expect = 8.4e-130
Identity = 242/426 (56.81%), Postives = 304/426 (71.36%), Query Frame = 0


Query: 107 GRWAPDILLETARAISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFTRMTDSG 166
           GRWA  +L+E ARA++ R+S RVQQLMWMLNEL+SPYGD DQKLA+YFLQ LF R+T SG
Sbjct: 185 GRWAAQLLMECARAVAGRDSQRVQQLMWMLNELASPYGDVDQKLASYFLQGLFARLTTSG 244

Query: 167 DRNYRALSSASEKSCSFESTRKMMLKFQEVSPWTTFGHVSCNGALIEAL----------- 226
            R  R L++AS+++ SF+STR+  LKFQE+SPWT FGHV+ NGA++E+            
Sbjct: 245 PRTLRTLATASDRNASFDSTRRTALKFQELSPWTPFGHVAANGAILESFLEXXXXXXXXX 304

Query: 227 --------EGESKLHIIDISNTYCTQWPTLLEALATR-TDDTPHLRLTTVVITKPGDGSG 286
                       +LHI+D+SNT+CTQWPTLLEALATR +DDTPHL +TTVV T     + 
Sbjct: 305 XXXXXXXXXXXXRLHILDLSNTFCTQWPTLLEALATRSSDDTPHLSITTVVPT----AAP 364

Query: 287 VAASQKVMKEIGTRMEKFARLMGVPFKFHTLYHSGDLSDLDLAKLDIKE---DEALAVNC 346
            AA+Q+VM+EIG R+EKFARLMGVPF F  ++H+GDL+DLDLA LD++E     ALAVNC
Sbjct: 365 SAAAQRVMREIGQRLEKFARLMGVPFSFRAVHHAGDLADLDLAALDLREGGATAALAVNC 424

Query: 347 IGALHSVAAVDNRRDFLIASFRSLRPRIITVIEEEADL-----DVGVDG---IEFLSGFQ 406
           + AL  VA     RD  +AS R L PR++TV+EEEADL     D   +      F+  F 
Sbjct: 425 VNALRGVA---RGRDAFVASLRRLEPRVVTVVEEEADLAAPEADASSEADTDAAFVKVFG 484

Query: 407 ECLRWFRVYFETLDESFTRTSNERLMLERAAGRAIVDLVACSAAESVERRESAARWAQRL 466
           E LR+F  Y ++L+ESF +TSNERL LERA GRAIVDLV+C A++S ERRE+AA WA+R+
Sbjct: 485 EGLRFFSAYMDSLEESFPKTSNERLSLERAVGRAIVDLVSCPASQSAERRETAASWARRM 544

Query: 467 HGSGFSPLIFSDEVCDDVRALLRRYKEGWAMTQS---------SDVAGIFLTWKEQPVVW 493
             +GFSP  FS++V DDVR+LLRRYKEGW+M  +         +  AG FL WKEQPVVW
Sbjct: 545 RSAGFSPAAFSEDVADDVRSLLRRYKEGWSMRDAGGATDDAAGAAAAGAFLAWKEQPVVW 603

[Close]

BLAST of Carg18551 vs. Swiss-Prot
Match: sp|A2YN56|SHR1_ORYSI (Protein SHORT-ROOT 1 OS=Oryza sativa subsp. indica OX=39946 GN=SHR1 PE=3 SV=1)

HSP 1 Score: 454.5 bits (1168), Expect = 1.5e-126
Identity = 234/413 (56.66%), Postives = 303/413 (73.37%), Query Frame = 0


Query: 110 APDILLETARAISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFTRMTDSGDRN 169
           A  +LLE AR+++ R+S RVQQLMWMLNEL+SPYGD +QKLA+YFLQ LF R+T SG R 
Sbjct: 192 ASQLLLECARSVAARDSQRVQQLMWMLNELASPYGDVEQKLASYFLQGLFARLTASGQRT 251

Query: 170 YRALSSASEKSCSFESTRKMMLKFQEVSPWTTFGHVSCNGALIE--------ALEGESKL 229
            R L++AS+++ SF+STR+  L+FQE+SPW++FGHV+ NGA++E        A     + 
Sbjct: 252 LRTLAAASDRNTSFDSTRRTALRFQELSPWSSFGHVAANGAILESFLEVAAAASSETQRF 311

Query: 230 HIIDISNTYCTQWPTLLEALATRT-DDTPHLRLTTVVITKPGDGSGVAASQKVMKEIGTR 289
           HI+D+SNT+CTQWPTLLEALATR+ D+TPHL +TTVV   P   +  AA Q+VM+EIG R
Sbjct: 312 HILDLSNTFCTQWPTLLEALATRSADETPHLSITTVVSAAP--SAPTAAVQRVMREIGQR 371

Query: 290 MEKFARLMGVPFKFHTLYHSGDLSDLDLAKLDIKE---DEALAVNCIGALHSVA-AVDNR 349
           MEKFARLMGVPF+F  ++HSGDL++LDL  LD++E     ALAVNC+ +L  V      R
Sbjct: 372 MEKFARLMGVPFRFRAVHHSGDLAELDLDALDLREGGATTALAVNCVNSLRGVVPGRARR 431

Query: 350 RDFLIASFRSLRPRIITVIEEEADL------------DVGVDGIEFLSGFQECLRWFRVY 409
           RD   AS R L PR++TV+EEEADL            + G     FL  F E LR+F  Y
Sbjct: 432 RDAFAASLRRLDPRVVTVVEEEADLVASDPDASSATEEGGDTEAAFLKVFGEGLRFFSAY 491

Query: 410 FETLDESFTRTSNERLMLERAAGRAIVDLVACSAAESVERRESAARWAQRLHGSGFSPLI 469
            ++L+ESF +TSNERL LER AGRAIVDLV+C A+ES+ERRE+AA WA+R+  +GFSP+ 
Sbjct: 492 MDSLEESFPKTSNERLALERGAGRAIVDLVSCPASESMERRETAASWARRMRSAGFSPVA 551

Query: 470 FSDEVCDDVRALLRRYKEGWAMTQ-----SSDVAGIFLTWKEQPVVWASAWKP 493
           FS++V DDVR+LLRRY+EGW+M +     S+  AG+FL WKEQP+VWASAW+P
Sbjct: 552 FSEDVADDVRSLLRRYREGWSMREAGTDDSAAGAGVFLAWKEQPLVWASAWRP 602

[Close]

BLAST of Carg18551 vs. Swiss-Prot
Match: sp|Q8H2X8|SHR1_ORYSJ (Protein SHORT-ROOT 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SHR1 PE=1 SV=2)

HSP 1 Score: 454.1 bits (1167), Expect = 1.9e-126
Identity = 234/413 (56.66%), Postives = 303/413 (73.37%), Query Frame = 0


Query: 110 APDILLETARAISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFTRMTDSGDRN 169
           A  +LLE AR+++ R+S RVQQLMWMLNEL+SPYGD +QKLA+YFLQ LF R+T SG R 
Sbjct: 192 ASQLLLECARSVAARDSQRVQQLMWMLNELASPYGDVEQKLASYFLQGLFARLTASGPRT 251

Query: 170 YRALSSASEKSCSFESTRKMMLKFQEVSPWTTFGHVSCNGALIE--------ALEGESKL 229
            R L++AS+++ SF+STR+  L+FQE+SPW++FGHV+ NGA++E        A     + 
Sbjct: 252 LRTLAAASDRNTSFDSTRRTALRFQELSPWSSFGHVAANGAILESFLEVAAAASSETQRF 311

Query: 230 HIIDISNTYCTQWPTLLEALATRT-DDTPHLRLTTVVITKPGDGSGVAASQKVMKEIGTR 289
           HI+D+SNT+CTQWPTLLEALATR+ D+TPHL +TTVV   P   +  AA Q+VM+EIG R
Sbjct: 312 HILDLSNTFCTQWPTLLEALATRSADETPHLSITTVVSAAP--SAPTAAVQRVMREIGQR 371

Query: 290 MEKFARLMGVPFKFHTLYHSGDLSDLDLAKLDIKE---DEALAVNCIGALHSVA-AVDNR 349
           MEKFARLMGVPF+F  ++HSGDL++LDL  LD++E     ALAVNC+ +L  V      R
Sbjct: 372 MEKFARLMGVPFRFRAVHHSGDLAELDLDALDLREGGATTALAVNCVNSLRGVVPGRARR 431

Query: 350 RDFLIASFRSLRPRIITVIEEEADL------------DVGVDGIEFLSGFQECLRWFRVY 409
           RD   AS R L PR++TV+EEEADL            + G     FL  F E LR+F  Y
Sbjct: 432 RDAFAASLRRLDPRVVTVVEEEADLVASDPDASSATEEGGDTEAAFLKVFGEGLRFFSAY 491

Query: 410 FETLDESFTRTSNERLMLERAAGRAIVDLVACSAAESVERRESAARWAQRLHGSGFSPLI 469
            ++L+ESF +TSNERL LER AGRAIVDLV+C A+ES+ERRE+AA WA+R+  +GFSP+ 
Sbjct: 492 MDSLEESFPKTSNERLALERGAGRAIVDLVSCPASESMERRETAASWARRMRSAGFSPVA 551

Query: 470 FSDEVCDDVRALLRRYKEGWAMTQ-----SSDVAGIFLTWKEQPVVWASAWKP 493
           FS++V DDVR+LLRRY+EGW+M +     S+  AG+FL WKEQP+VWASAW+P
Sbjct: 552 FSEDVADDVRSLLRRYREGWSMREAGTDDSAAGAGVFLAWKEQPLVWASAWRP 602

[Close]

BLAST of Carg18551 vs. TrEMBL
Match: tr|A0A1S3B100|A0A1S3B100_CUCME (protein SHORT-ROOT OS=Cucumis melo OX=3656 GN=LOC103484850 PE=3 SV=1)

HSP 1 Score: 768.8 bits (1984), Expect = 7.2e-219
Identity = 372/404 (92.08%), Postives = 395/404 (97.77%), Query Frame = 0


Query: 89  IDQFSFVSPAPDFNFEFSGRWAPDILLETARAISDRNSARVQQLMWMLNELSSPYGDTDQ 148
           +DQFSF+SP+PDFNFEFSGRWAPDILLETARAISDRNSARVQQLMWMLNELSSPYGDTDQ
Sbjct: 87  LDQFSFLSPSPDFNFEFSGRWAPDILLETARAISDRNSARVQQLMWMLNELSSPYGDTDQ 146

Query: 149 KLAAYFLQALFTRMTDSGDRNYRALSSASEKSCSFESTRKMMLKFQEVSPWTTFGHVSCN 208
           KLAAYFLQALF+RMTDSGDRNYRAL+SASEK+CSFESTRK+MLKFQEVSPWTTFGHVSCN
Sbjct: 147 KLAAYFLQALFSRMTDSGDRNYRALASASEKTCSFESTRKVMLKFQEVSPWTTFGHVSCN 206

Query: 209 GALIEALEGESKLHIIDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVITKPGDGSGVA 268
           GALIEALEGESKLHIIDISNTYCTQWPTLLEALATRTDDTPHLRLTTVV TKP  G+G A
Sbjct: 207 GALIEALEGESKLHIIDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTTKPSGGTGTA 266

Query: 269 ASQKVMKEIGTRMEKFARLMGVPFKFHTLYHSGDLSDLDLAKLDIKEDEALAVNCIGALH 328
           ASQKVMKEIGTRMEKFARLMGVPFKF+ LYHSGDLS+LD+AKLDIKEDEALA+NC+GAL 
Sbjct: 267 ASQKVMKEIGTRMEKFARLMGVPFKFNALYHSGDLSELDMAKLDIKEDEALAINCVGALR 326

Query: 329 SVAAVDNRRDFLIASFRSLRPRIITVIEEEADLDVGVDGIEFLSGFQECLRWFRVYFETL 388
           SVAA++NRRDFLI+SFRSLRPRIITVIEEEADLDVGVDGIEF+ GFQECLRWFRVYFETL
Sbjct: 327 SVAAINNRRDFLISSFRSLRPRIITVIEEEADLDVGVDGIEFMRGFQECLRWFRVYFETL 386

Query: 389 DESFTRTSNERLMLERAAGRAIVDLVACSAAESVERRESAARWAQRLHGSGFSPLIFSDE 448
           DESF+RTSNERLMLERAAGRAIVDLVACSAAESVERRE+A+RWAQRLHG+GF P+ FSDE
Sbjct: 387 DESFSRTSNERLMLERAAGRAIVDLVACSAAESVERRETASRWAQRLHGNGFGPVTFSDE 446

Query: 449 VCDDVRALLRRYKEGWAMTQSSDVAGIFLTWKEQPVVWASAWKP 493
           VCDDVRALLRRYKEGWAMTQSSDVAGIFLTWKEQPVVWASAW+P
Sbjct: 447 VCDDVRALLRRYKEGWAMTQSSDVAGIFLTWKEQPVVWASAWRP 490

[Close]

BLAST of Carg18551 vs. TrEMBL
Match: tr|A0A0A0KGH6|A0A0A0KGH6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G495620 PE=3 SV=1)

HSP 1 Score: 768.5 bits (1983), Expect = 9.3e-219
Identity = 371/404 (91.83%), Postives = 395/404 (97.77%), Query Frame = 0


Query: 89  IDQFSFVSPAPDFNFEFSGRWAPDILLETARAISDRNSARVQQLMWMLNELSSPYGDTDQ 148
           +DQFSF+SP+PDFNFEFSGRWAPDILLETARAISDRNSARVQQLMWMLNELSSPYGDTDQ
Sbjct: 87  LDQFSFLSPSPDFNFEFSGRWAPDILLETARAISDRNSARVQQLMWMLNELSSPYGDTDQ 146

Query: 149 KLAAYFLQALFTRMTDSGDRNYRALSSASEKSCSFESTRKMMLKFQEVSPWTTFGHVSCN 208
           KLAAYFLQALF+RMTDSGDRNYRAL+SASEK+CSFESTRK+MLKFQEVSPWTTFGHVSCN
Sbjct: 147 KLAAYFLQALFSRMTDSGDRNYRALASASEKTCSFESTRKVMLKFQEVSPWTTFGHVSCN 206

Query: 209 GALIEALEGESKLHIIDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVITKPGDGSGVA 268
           GALIEALEGESKLHI+DISNTYCTQWPTLLEALATRTDDTPHLRLTTVV TKP  G+G A
Sbjct: 207 GALIEALEGESKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTTKPSGGTGAA 266

Query: 269 ASQKVMKEIGTRMEKFARLMGVPFKFHTLYHSGDLSDLDLAKLDIKEDEALAVNCIGALH 328
           ASQKVMKEIGTRMEKFARLMGVPFKF+ LYHSGDLS+LD+AKLDIKEDEALA+NC+GAL 
Sbjct: 267 ASQKVMKEIGTRMEKFARLMGVPFKFNALYHSGDLSELDMAKLDIKEDEALAINCVGALR 326

Query: 329 SVAAVDNRRDFLIASFRSLRPRIITVIEEEADLDVGVDGIEFLSGFQECLRWFRVYFETL 388
           SVAA++NRRDFLI+SFRSLRPRIITVIEEEADLDVGVDGIEF+ GFQECLRWFRVYFETL
Sbjct: 327 SVAAINNRRDFLISSFRSLRPRIITVIEEEADLDVGVDGIEFMRGFQECLRWFRVYFETL 386

Query: 389 DESFTRTSNERLMLERAAGRAIVDLVACSAAESVERRESAARWAQRLHGSGFSPLIFSDE 448
           DESF+RTSNERLMLERAAGRAIVDLVACSAAESVERRE+A+RWAQRLHG+GF P+ FSDE
Sbjct: 387 DESFSRTSNERLMLERAAGRAIVDLVACSAAESVERRETASRWAQRLHGNGFGPVTFSDE 446

Query: 449 VCDDVRALLRRYKEGWAMTQSSDVAGIFLTWKEQPVVWASAWKP 493
           VCDDVRALLRRYKEGWAMTQSSDVAGIFLTWKEQPVVWASAW+P
Sbjct: 447 VCDDVRALLRRYKEGWAMTQSSDVAGIFLTWKEQPVVWASAWRP 490

[Close]

BLAST of Carg18551 vs. TrEMBL
Match: tr|F6HSS8|F6HSS8_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_07s0129g00030 PE=3 SV=1)

HSP 1 Score: 669.8 bits (1727), Expect = 4.5e-189
Identity = 330/406 (81.28%), Postives = 368/406 (90.64%), Query Frame = 0


Query: 91  QFSFVSPAPDFNFEF----SGRWAPDILLETARAISDRNSARVQQLMWMLNELSSPYGDT 150
           +FSF SPA D + EF    SG+WA +ILLETARAI+D+NSARVQQLMWMLNELSSPYGDT
Sbjct: 92  EFSF-SPARDLHLEFNSSASGKWASEILLETARAIADKNSARVQQLMWMLNELSSPYGDT 151

Query: 151 DQKLAAYFLQALFTRMTDSGDRNYRALSSASEKSCSFESTRKMMLKFQEVSPWTTFGHVS 210
           DQKLAAYFLQALF+RMTDSG+R YR L SASEK+CSFESTRKM+LKFQEVSPWTTFGHV+
Sbjct: 152 DQKLAAYFLQALFSRMTDSGERCYRTLISASEKTCSFESTRKMVLKFQEVSPWTTFGHVA 211

Query: 211 CNGALIEALEGESKLHIIDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVITKPGDGSG 270
           CNGA++EALEGESKLHIIDISNTYCTQWPTLLEALATRTD+TPHLRLTTVV +K G G G
Sbjct: 212 CNGAIMEALEGESKLHIIDISNTYCTQWPTLLEALATRTDETPHLRLTTVVTSKAGTG-G 271

Query: 271 VAASQKVMKEIGTRMEKFARLMGVPFKFHTLYHSGDLSDLDLAKLDIKEDEALAVNCIGA 330
           +A  QK+MKEIG RMEKFARLMGVPFKF+ L+HSGDLS L+LA+LDIK+DEALAVNC+GA
Sbjct: 272 MAPVQKLMKEIGNRMEKFARLMGVPFKFNVLHHSGDLSHLNLAELDIKDDEALAVNCVGA 331

Query: 331 LHSVAAVDNRRDFLIASFRSLRPRIITVIEEEADLDVGVDGIEFLSGFQECLRWFRVYFE 390
           LHSV A  NRRD +++SFR L PRIITV+EEEADLDVGVDG +F+ GFQECLRWFRVY E
Sbjct: 332 LHSVTAFGNRRDIVVSSFRRLHPRIITVVEEEADLDVGVDGFDFVKGFQECLRWFRVYLE 391

Query: 391 TLDESFTRTSNERLMLERAAGRAIVDLVACSAAESVERRESAARWAQRLHGSGFSPLIFS 450
           +LDESF RTSNERLMLERAAGRAIVDLVAC  +ES+ERRE+A RW+QRLH SGFSP+ FS
Sbjct: 392 SLDESFPRTSNERLMLERAAGRAIVDLVACPPSESIERRETATRWSQRLHASGFSPVSFS 451

Query: 451 DEVCDDVRALLRRYKEGWAMTQSSDVAGIFLTWKEQPVVWASAWKP 493
           DEVCDDVRALLRRYKEGW+MTQSSD AGIFL+WK+QPVVW SAWKP
Sbjct: 452 DEVCDDVRALLRRYKEGWSMTQSSD-AGIFLSWKDQPVVWTSAWKP 494

[Close]

BLAST of Carg18551 vs. TrEMBL
Match: tr|A0A1R3GEG5|A0A1R3GEG5_COCAP (Transcription factor GRAS OS=Corchorus capsularis OX=210143 GN=CCACVL1_26529 PE=3 SV=1)

HSP 1 Score: 667.5 bits (1721), Expect = 2.2e-188
Identity = 320/407 (78.62%), Postives = 364/407 (89.43%), Query Frame = 0


Query: 88  PIDQFSFVSPAPDFNFEFSGRWAPDILLETARAISDRNSARVQQLMWMLNELSSPYGDTD 147
           P D FSF SPA D NF+FSG+WA DILLETA AI+DRNS RVQQLMWMLNELSSPYGDTD
Sbjct: 102 PSDHFSF-SPARDLNFDFSGKWATDILLETATAIADRNSGRVQQLMWMLNELSSPYGDTD 161

Query: 148 QKLAAYFLQALFTRMTDSGDRNYRALSSASEKSCSFESTRKMMLKFQEVSPWTTFGHVSC 207
           QKL ++FLQALF+RMTDSG+R YR L+S SEK+CSFESTRKM+LKFQEVSPWTTFGHV+C
Sbjct: 162 QKLGSHFLQALFSRMTDSGERCYRTLASVSEKTCSFESTRKMVLKFQEVSPWTTFGHVAC 221

Query: 208 NGALIEALEGESKLHIIDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVITKPG--DGS 267
           NGA++EA EGE+KLHIIDISNTYCTQWPTLLEALATRTD+TPHLRLTT+V+ K G   G 
Sbjct: 222 NGAIMEAFEGETKLHIIDISNTYCTQWPTLLEALATRTDETPHLRLTTIVVRKNGAVSGG 281

Query: 268 GVAASQKVMKEIGTRMEKFARLMGVPFKFHTLYHSGDLSDLDLAKLDIKEDEALAVNCIG 327
           G AA QKVMKEIG RMEKFARLMGVPFKF+ ++H+GDL DLDL++LDIKEDEALA+NC+ 
Sbjct: 282 GSAAVQKVMKEIGNRMEKFARLMGVPFKFNVIHHAGDLCDLDLSELDIKEDEALAINCVN 341

Query: 328 ALHSVAAVDNRRDFLIASFRSLRPRIITVIEEEADLDVGVDGIEFLSGFQECLRWFRVYF 387
            LHS+ AVDNRRD +I++FR L+PR+ITV+EEEADLDVGVDG+EF+ GFQECLRWFRVYF
Sbjct: 342 TLHSITAVDNRRDIMISNFRRLQPRVITVVEEEADLDVGVDGLEFVKGFQECLRWFRVYF 401

Query: 388 ETLDESFTRTSNERLMLERAAGRAIVDLVACSAAESVERRESAARWAQRLHGSGFSPLIF 447
           E LDESF+RTSNERLMLERAAGRAIVDLVAC  +ES+ERRESA RW++R H SGFS +  
Sbjct: 402 EALDESFSRTSNERLMLERAAGRAIVDLVACPPSESIERRESATRWSRRFHASGFSAVAL 461

Query: 448 SDEVCDDVRALLRRYKEGWAMTQSSDVAGIFLTWKEQPVVWASAWKP 493
           SDEVCDDVRALLRRYKEGW+M Q  D AGIFL+WK+QPVVWASAW+P
Sbjct: 462 SDEVCDDVRALLRRYKEGWSMAQCPD-AGIFLSWKDQPVVWASAWRP 506

[Close]

BLAST of Carg18551 vs. TrEMBL
Match: tr|M5VXS8|M5VXS8_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G220800 PE=3 SV=1)

HSP 1 Score: 666.0 bits (1717), Expect = 6.5e-188
Identity = 314/393 (79.90%), Postives = 365/393 (92.88%), Query Frame = 0


Query: 102 NFEFS-GRWAPDILLETARAISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFT 161
           NFE S G+WAP++LLETA+AI+D+NS+RVQQLMWMLNEL SPYGDTDQKL +YFLQALF+
Sbjct: 117 NFELSNGKWAPELLLETAKAIADKNSSRVQQLMWMLNELGSPYGDTDQKLTSYFLQALFS 176

Query: 162 RMTDSGDRNYRALSSASEKSCSFESTRKMMLKFQEVSPWTTFGHVSCNGALIEALEGESK 221
           RMTDSGDR YR L SASEK+CSFESTRKM+LKFQEVSPWTTFGHV+CNGA++EA +GE K
Sbjct: 177 RMTDSGDRCYRTLISASEKTCSFESTRKMVLKFQEVSPWTTFGHVACNGAIMEAFDGEPK 236

Query: 222 LHIIDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVITKPGDGSGVAASQKVMKEIGTR 281
           LHIIDISNTYCTQWPTLLEALATRTD+TPHLRLTTVV T+  DGSG A +QKVMKEIG R
Sbjct: 237 LHIIDISNTYCTQWPTLLEALATRTDETPHLRLTTVVATRASDGSGGAPAQKVMKEIGAR 296

Query: 282 MEKFARLMGVPFKFHTLYHSGDLSDLDLAKLDIKEDEALAVNCIGALHSVAAVDNRRDFL 341
           MEKFARLMGVPFKF+ ++HSGDLS+L+L++LDI++DEALAVNC+G LHS+ AV NRRD+L
Sbjct: 297 MEKFARLMGVPFKFNAVHHSGDLSELNLSELDIRDDEALAVNCVGTLHSIQAVGNRRDYL 356

Query: 342 IASFRSLRPRIITVIEEEADLDVGVDGIEFLSGFQECLRWFRVYFETLDESFTRTSNERL 401
           +++FRSLRPRIIT++EEEADLDVGVDG++F+ GFQECLRWFRVYFE LDESF RTSNERL
Sbjct: 357 VSAFRSLRPRIITLVEEEADLDVGVDGLDFVHGFQECLRWFRVYFEALDESFARTSNERL 416

Query: 402 MLERAAGRAIVDLVACSAAESVERRESAARWAQRLHGSGFSPLIFSDEVCDDVRALLRRY 461
           MLERAAGRA+VDLVAC+ +ESVERRE+A RW++R+HG+GFSP+ FSDEVCDDVRALLRRY
Sbjct: 417 MLERAAGRAVVDLVACAPSESVERRETATRWSRRMHGAGFSPVTFSDEVCDDVRALLRRY 476

Query: 462 KEGWAMTQSSDV-AGIFLTWKEQPVVWASAWKP 493
           KEGWAMTQ S+  AGIFL+WK+QPVVWASAW+P
Sbjct: 477 KEGWAMTQCSEAGAGIFLSWKDQPVVWASAWRP 509

The following BLAST results are available for this feature:

BLAST of Carg18551 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022962666.1	2.4e-242	97.36	protein SHORT-ROOT-like [Cucurbita moschata]	[more]
XP_023003798.1	5.3e-242	97.15	protein SHORT-ROOT-like [Cucurbita maxima] >XP_023517414.1 protein SHORT-ROOT-li...	[more]
XP_022949653.1	2.6e-220	88.82	protein SHORT-ROOT-like [Cucurbita moschata]	[more]
XP_023543503.1	4.4e-220	88.62	protein SHORT-ROOT-like [Cucurbita pepo subsp. pepo]	[more]
XP_022979035.1	1.7e-219	88.01	protein SHORT-ROOT-like [Cucurbita maxima]	[more]

BLAST of Carg18551 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G37650.1	1.4e-156	65.36	GRAS family transcription factor	[more]
AT2G04890.1	1.6e-54	32.29	SCARECROW-like 21	[more]
AT1G50600.1	1.4e-50	31.25	scarecrow-like 5	[more]
AT5G48150.1	4.0e-50	30.03	GRAS family transcription factor	[more]
AT3G49950.1	8.4e-48	30.19	GRAS family transcription factor	[more]

BLAST of Carg18551 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SZF7\|SHR_ARATH	2.6e-155	65.36	Protein SHORT-ROOT OS=Arabidopsis thaliana OX=3702 GN=SHR PE=1 SV=1	[more]
sp\|Q75I13\|SHR2_ORYSJ	3.8e-130	57.04	Protein SHORT-ROOT 2 OS=Oryza sativa subsp. japonica OX=39947 GN=SHR2 PE=1 SV=1	[more]
sp\|A2XIA8\|SHR2_ORYSI	8.4e-130	56.81	Protein SHORT-ROOT 2 OS=Oryza sativa subsp. indica OX=39946 GN=SHR2 PE=3 SV=1	[more]
sp\|A2YN56\|SHR1_ORYSI	1.5e-126	56.66	Protein SHORT-ROOT 1 OS=Oryza sativa subsp. indica OX=39946 GN=SHR1 PE=3 SV=1	[more]
sp\|Q8H2X8\|SHR1_ORYSJ	1.9e-126	56.66	Protein SHORT-ROOT 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SHR1 PE=1 SV=2	[more]

BLAST of Carg18551 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B100\|A0A1S3B100_CUCME	7.2e-219	92.08	protein SHORT-ROOT OS=Cucumis melo OX=3656 GN=LOC103484850 PE=3 SV=1	[more]
tr\|A0A0A0KGH6\|A0A0A0KGH6_CUCSA	9.3e-219	91.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G495620 PE=3 SV=1	[more]
tr\|F6HSS8\|F6HSS8_VITVI	4.5e-189	81.28	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_07s0129g00030 PE=3 SV=...	[more]
tr\|A0A1R3GEG5\|A0A1R3GEG5_COCAP	2.2e-188	78.62	Transcription factor GRAS OS=Corchorus capsularis OX=210143 GN=CCACVL1_26529 PE=...	[more]
tr\|M5VXS8\|M5VXS8_PRUPE	6.5e-188	79.90	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G220800 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0048366	leaf development
GO:0008356	asymmetric cell division
GO:0009956	radial pattern formation

Vocabulary: **Molecular Function**
Term	Definition
GO:0043565	sequence-specific DNA binding
GO:0003700	transcription factor activity, sequence-specific DNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **INTERPRO**
Term	Definition
IPR030019	Short-root
IPR005202	TF_GRAS

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008356	asymmetric cell division
biological_process	GO:0048366	leaf development
biological_process	GO:0009956	radial pattern formation
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18551-RA	Carg18551-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005202	Transcription factor GRAS	PFAM	PF03514	GRAS	coord: 113..491 e-value: 2.2E-103 score: 346.0
IPR005202	Transcription factor GRAS	PROSITE	PS50985	GRAS	coord: 101..491 score: 73.588
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..35
None	No IPR available	PANTHER	PTHR31636	FAMILY NOT NAMED	coord: 1..492
IPR030019	Protein short-root	PANTHER	PTHR31636:SF9	PROTEIN SHORT-ROOT	coord: 1..492

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg18551	Cla014025	Watermelon (97103) v1	carwmB0005
Carg18551	Csa6G495620	Cucumber (Chinese Long) v2	carcuB0003
Carg18551	MELO3C007630	Melon (DHL92) v3.5.1	carmeB0002
Carg18551	ClCG01G017540	Watermelon (Charleston Gray)	carwcgB0002
Carg18551	CSPI06G28870	Wild cucumber (PI 183967)	carcpiB0003
Carg18551	Cucsa.103160	Cucumber (Gy14) v1	carcgyB0001
Carg18551	CmaCh07G006500	Cucurbita maxima (Rimu)	carcmaB0004
Carg18551	CmaCh03G009180	Cucurbita maxima (Rimu)	carcmaB0003
Carg18551	CmoCh07G006610	Cucurbita moschata (Rifu)	carcmoB0005
Carg18551	Lsi01G008970	Bottle gourd (USVL1VR-Ls)	carlsiB001
Carg18551	Cp4.1LG10g02020	Cucurbita pepo (Zucchini)	carcpeB0001
Carg18551	Cp4.1LG19g10730	Cucurbita pepo (Zucchini)	carcpeB0002
Carg18551	CsGy6G028340	Cucumber (Gy14) v2	carcgybB0003
Carg18551	MELO3C007630.2	Melon (DHL92) v3.6.1	carmedB0003
Carg18551	CsaV3_6G044080	Cucumber (Chinese Long) v3	carcucB0003
Carg18551	Cla97C01G016710	Watermelon (97103) v2	carwmbB0002
Carg18551	Bhi03G000788	Wax gourd	carwgoB0003

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg18551	Carg00792	Silver-seed gourd	carcarB001

The following block(s) are covering this gene:


Gene	Organism	Block
Carg18551	Wax gourd	carwgoB0001
Carg18551	Silver-seed gourd	carcarB000
Carg18551	Silver-seed gourd	carcarB002
Carg18551	Silver-seed gourd	carcarB003
Carg18551	Cucumber (Gy14) v2	carcgybB0001
Carg18551	Cucumber (Gy14) v2	carcgybB0002
Carg18551	Cucumber (Gy14) v1	carcgyB0002
Carg18551	Cucumber (Gy14) v1	carcgyB0003
Carg18551	Cucurbita maxima (Rimu)	carcmaB0001
Carg18551	Cucurbita maxima (Rimu)	carcmaB0002
Carg18551	Cucurbita moschata (Rifu)	carcmoB0001
Carg18551	Cucurbita moschata (Rifu)	carcmoB0002
Carg18551	Cucurbita moschata (Rifu)	carcmoB0003
Carg18551	Cucurbita moschata (Rifu)	carcmoB0004
Carg18551	Cucurbita pepo (Zucchini)	carcpeB0003
Carg18551	Cucurbita pepo (Zucchini)	carcpeB0004
Carg18551	Wild cucumber (PI 183967)	carcpiB0001
Carg18551	Wild cucumber (PI 183967)	carcpiB0002
Carg18551	Cucumber (Chinese Long) v2	carcuB0001
Carg18551	Cucumber (Chinese Long) v2	carcuB0002
Carg18551	Cucumber (Chinese Long) v3	carcucB0001
Carg18551	Cucumber (Chinese Long) v3	carcucB0002
Carg18551	Bottle gourd (USVL1VR-Ls)	carlsiB002
Carg18551	Bottle gourd (USVL1VR-Ls)	carlsiB003
Carg18551	Melon (DHL92) v3.5.1	carmeB0001
Carg18551	Melon (DHL92) v3.6.1	carmedB0001
Carg18551	Melon (DHL92) v3.6.1	carmedB0002
Carg18551	Watermelon (Charleston Gray)	carwcgB0003
Carg18551	Watermelon (97103) v1	carwmB0004
Carg18551	Watermelon (97103) v2	carwmbB0003