CsGy6G026110 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy6G026110
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	protein RALF-like 19
Location	Chr6 : 25678465 .. 25680009 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGATCAACGAAGCTCTGCCTATTTCTCCTCCTCATTGCAGTCGTCGCCGCTCCACTTTGCCTTGCCTTATCCGACGACTGGACTCGCTCCTACGCTGATGTCCCCGATTATGACTTTACGAACAGCAATGAAGACAGCCGAAGGTTACTTTTTCAATATGGATTTGCTTATAAATATCCAAAAAATAAGTATTTGGGCTATGATGCACTTAGGAAGAATAATATCCCCTGCCGCCATCGTGGTAGATCTTACTATGACTGTAAGAAGCGTAAGAAGGCCAACCCTTATCGTCGTGGCTGCATTGCCATCACCGGCTGCGCTCGTTTCACCGATTAAATTGTTTTTTTAAAAAATAATCTGTATTGAGATTGTTTTTTGATTTATTGTGGGATCGGTTTGAATGTTTTCTCCCTATTTTATTTTTTGTGAAATTTTAATTTTGTTTTATATTATTTTAAAGTTTTCCGTCCATTCGGAATGTAAGGATCGATCATATAATGACCTCTATAAAATGGTTAAAATATAATTTTCATTCACTCAACTTTTTTCAACGTGACACCTATCAAACCATTATATCTCAACCTCAAAAGAGGAATAGCATCTTCTTCTAGTGGTCAAAATATCGTGTAGGAAACTTCCGGTTTAAAAGTGAAATTTTCATTCGAAAAAAAAGTGAATTTCTTGTAATGTTTATGATCCACCATGCTCCTATAACTAGTCCAAACAATCTAACAATGGTTCAATGATTCCAATAATTTCCGAAGACAATGATGAGGTAAATGAGTAAGTATTAAGCTTTGTAATTTAATGTTAGATGTTATATTAAAAATATCATTCATTTCACTTATTTAAAGTTTTGGTTTGATTTAATATTTAATACAAATAATGATAAATGAAAGTGAATAAAATATGGGATGATATGTTCAAATCCAATTTTTCAACATCTCATATGACAAAAACATTACCACACTCCAATACAAATATCGCCACTTACAATTTAATACACCCTTTTCACTTTAACACGTATATAATATCTAATAACAAAGTGTACAACAAATTCTTATTTATAATGGTACGATCTAGAGTTTTCCAACAATTACATCTAAATAGATTCACATGATTTTATTATTGTTTTCAAGTATCTTCTCCTTTATTGCAAAAAGTACAAAATTTGATTTTAAAAATTATAAAAACCAATAAGCTTTCATTTTCATTACCCAAAAAGATCCCAAATAGATAACATTGCTTTAGTTTGAGCATAATGCCCATTTTCATCTGTCTACGTTGATGTATCTCACACTCTAATATGATAATATCAAATCCAAGCTTCAAAGATCCTATATCATTTTTTTTATTGTTTCTTTTGAATCACTTTTTTTTTCTTTTCATAAAAAGGCTTTTTAACAAGTTTTCCCAACTTCCCATTGCAAGAAGACATGTTACATTGTTATAATTCCCTAAGATATCATGACTCCCTTCAATGGTGACAAGATTTTCTTATGTTGATTTTTAATTTTAAATTTTAGATTGTGGAGTACTTGA

mRNA sequence

ATGAGATCAACGAAGCTCTGCCTATTTCTCCTCCTCATTGCAGTCGTCGCCGCTCCACTTTGCCTTGCCTTATCCGACGACTGGACTCGCTCCTACGCTGATGTCCCCGATTATGACTTTACGAACAGCAATGAAGACAGCCGAAGGTTACTTTTTCAATATGGATTTGCTTATAAATATCCAAAAAATAAGTATTTGGGCTATGATGCACTTAGGAAGAATAATATCCCCTGCCGCCATCGTGGTAGATCTTACTATGACTGTAAGAAGCGTAAGAAGGCCAACCCTTATCGTCGTGGCTGCATTGCCATCACCGGCTGCGCTCTTTTCCGTCCATTCGGAATATTGTGGAGTACTTGA

Coding sequence (CDS)

ATGAGATCAACGAAGCTCTGCCTATTTCTCCTCCTCATTGCAGTCGTCGCCGCTCCACTTTGCCTTGCCTTATCCGACGACTGGACTCGCTCCTACGCTGATGTCCCCGATTATGACTTTACGAACAGCAATGAAGACAGCCGAAGGTTACTTTTTCAATATGGATTTGCTTATAAATATCCAAAAAATAAGTATTTGGGCTATGATGCACTTAGGAAGAATAATATCCCCTGCCGCCATCGTGGTAGATCTTACTATGACTGTAAGAAGCGTAAGAAGGCCAACCCTTATCGTCGTGGCTGCATTGCCATCACCGGCTGCGCTCTTTTCCGTCCATTCGGAATATTGTGGAGTACTTGA

Protein sequence

MRSTKLCLFLLLIAVVAAPLCLALSDDWTRSYADVPDYDFTNSNEDSRRLLFQYGFAYKYPKNKYLGYDALRKNNIPCRHRGRSYYDCKKRKKANPYRRGCIAITGCALFRPFGILWST

Homology

[Close]

BLAST of CsGy6G026110 vs. NCBI nr
Match: XP_004148669.1 (PREDICTED: protein RALF-like 19 [Cucumis sativus] >KGN48379.1 hypothetical protein Csa_6G484570 [Cucumis sativus])

HSP 1 Score: 228.0 bits (580), Expect = 1.7e-56
Identity = 109/110 (99.09%), Postives = 109/110 (99.09%), Query Frame = 0


Query: 1   MRSTKLCLFLLLIAVVAAPLCLALSDDWTRSYADVPDYDFTNSNEDSRRLLFQYGFAYKY 60
           MRSTKLCLFLLLIAVVAAPLCLALSDDWTRSYADVPDYDFTNSNEDSRRLLFQYGFAYKY
Sbjct: 1   MRSTKLCLFLLLIAVVAAPLCLALSDDWTRSYADVPDYDFTNSNEDSRRLLFQYGFAYKY 60

Query: 61  PKNKYLGYDALRKNNIPCRHRGRSYYDCKKRKKANPYRRGCIAITGCALF 111
           PKNKYLGYDALRKNNIPCRHRGRSYYDCKKRKKANPYRRGCIAITGCA F
Sbjct: 61  PKNKYLGYDALRKNNIPCRHRGRSYYDCKKRKKANPYRRGCIAITGCARF 110

[Close]

BLAST of CsGy6G026110 vs. NCBI nr
Match: XP_008441015.1 (PREDICTED: protein RALF-like 19 [Cucumis melo])

HSP 1 Score: 198.0 bits (502), Expect = 1.8e-47
Identity = 96/110 (87.27%), Postives = 101/110 (91.82%), Query Frame = 0


Query: 1   MRSTKLCLFLLLIAVVAAPLCLALSDDWTRSYADVPDYDFTNSNEDSRRLLFQYGFAYKY 60
           MRS KL LFLL+IAVVAAPLCLA SDDWT +YA  P+YDFT +NEDSRRLLFQYGFAYKY
Sbjct: 1   MRSMKLGLFLLVIAVVAAPLCLAFSDDWTHAYA-APNYDFTTNNEDSRRLLFQYGFAYKY 60

Query: 61  PKNKYLGYDALRKNNIPCRHRGRSYYDCKKRKKANPYRRGCIAITGCALF 111
           PKNKYLGYDALRKNN PCRHRGRSYYDCKKR+KANPYRRGCIAITGCA F
Sbjct: 61  PKNKYLGYDALRKNNSPCRHRGRSYYDCKKRRKANPYRRGCIAITGCARF 109

[Close]

BLAST of CsGy6G026110 vs. NCBI nr
Match: XP_004150814.1 (PREDICTED: protein RALF-like 4 [Cucumis sativus] >KGN47203.1 F3H9.8 protein [Cucumis sativus])

HSP 1 Score: 151.8 bits (382), Expect = 1.5e-33
Identity = 81/113 (71.68%), Postives = 88/113 (77.88%), Query Frame = 0


Query: 6   LCLFLLLIAVVAAPLCLALSDDWTRSYADVPDYDF--------TNSNEDSRRLLFQYGFA 65
           LCL LLL+A +A  L +AL  DWTR+Y + PDY F         N  +DSRRLLFQYGFA
Sbjct: 5   LCL-LLLVAAIAITLPVALC-DWTRAYGN-PDYAFWGTAEPATINDVDDSRRLLFQYGFA 64

Query: 66  YKYPKNKYLGYDALRKNNIPCRHRGRSYYDCKKRKKANPYRRGCIAITGCALF 111
           YKYPKNKYLGYDALRKNN PCRHRG SYYDC KR+KANPYRRGCIAITGCA F
Sbjct: 65  YKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARF 114

[Close]

BLAST of CsGy6G026110 vs. NCBI nr
Match: XP_016902249.1 (PREDICTED: protein RALF-like 4 [Cucumis melo])

HSP 1 Score: 148.3 bits (373), Expect = 1.7e-32
Identity = 80/115 (69.57%), Postives = 88/115 (76.52%), Query Frame = 0


Query: 5   KLCL-FLLLIAVVAAPLCLALSDDWTRSYADVPDYDF--------TNSNEDSRRLLFQYG 64
           KLCL  LLL+A  AA L +AL  DWTR++ + P+Y F         N  +DSRRLLFQYG
Sbjct: 2   KLCLCLLLLVAAFAATLPVALC-DWTRAFGN-PEYAFWGNSAPATINDVDDSRRLLFQYG 61

Query: 65  FAYKYPKNKYLGYDALRKNNIPCRHRGRSYYDCKKRKKANPYRRGCIAITGCALF 111
           FAYKYPKNKYLGYDALRKNN PCR RG SYYDC KR+KANPYRRGCIAITGCA F
Sbjct: 62  FAYKYPKNKYLGYDALRKNNSPCRRRGHSYYDCTKRRKANPYRRGCIAITGCARF 114

[Close]

BLAST of CsGy6G026110 vs. NCBI nr
Match: XP_022927734.1 (protein RALF-like 4 [Cucurbita moschata])

HSP 1 Score: 114.4 bits (285), Expect = 2.7e-22
Identity = 67/120 (55.83%), Postives = 78/120 (65.00%), Query Frame = 0


Query: 1   MRSTKLCLFLL-LIAVVAAPLCLALSDDWTRS--YADVPDYDFTNSN------EDSRRLL 60
           M + KLCLFLL ++AVVA PL  A  +    S    D+  Y F   +      EDSRR L
Sbjct: 1   METVKLCLFLLFVLAVVAPPLSFAYHETSNDSSYVNDISKYSFFGGDSSEAMTEDSRRQL 60

Query: 61  FQYGFAY-KYPKNKYLGYDALRKNNIPCRHRGRSYYDCKKRKKANPYRRGCIAITGCALF 111
           FQYGFAY K  + ++L Y AL KNNIPC  RG SYYDCKKR++ NPYRRGC AITGCA F
Sbjct: 61  FQYGFAYNKEARRRFLTYYALSKNNIPCGRRGTSYYDCKKRRRINPYRRGCAAITGCARF 120

[Close]

BLAST of CsGy6G026110 vs. TAIR10
Match: AT1G28270.1 (ralf-like 4)

HSP 1 Score: 81.6 bits (200), Expect = 3.5e-16
Identity = 33/44 (75.00%), Postives = 39/44 (88.64%), Query Frame = 0


Query: 64  KYLGYDALRKNNIPCRHRGRSYYDCKKRKKANPYRRGCIAITGC 108
           +Y+GYDAL+KNN+PC  RGRSYYDCKKR++ NPYRRGC AIT C
Sbjct: 62  RYIGYDALKKNNVPCSRRGRSYYDCKKRRRNNPYRRGCSAITHC 105

[Close]

BLAST of CsGy6G026110 vs. TAIR10
Match: AT2G33775.1 (ralf-like 19)

HSP 1 Score: 78.6 bits (192), Expect = 3.0e-15
Identity = 49/111 (44.14%), Postives = 62/111 (55.86%), Query Frame = 0


Query: 6   LCLFLLLIAVVAAPLCLALSDDWTRSYADV---------PDYDFTNSNEDSRRLLFQYGF 65
           L L LL +AVVA     + +  WT + + V          + D+   +E +RR L     
Sbjct: 7   LILGLLTLAVVAE----SANATWTLTKSCVNGQGCIGEDGELDYLMDSETNRRQL----- 66

Query: 66  AYKYPKNKYLGYDALRKNNIPCRHRGRSYYDCKKRKKANPYRRGCIAITGC 108
                +  Y+ Y ALRKNN+PC  RGRSYYDCKKRK+ANPYRRGC  IT C
Sbjct: 67  ---AARRSYISYGALRKNNVPCSRRGRSYYDCKKRKRANPYRRGCSVITHC 105

[Close]

BLAST of CsGy6G026110 vs. TAIR10
Match: AT4G15800.1 (ralf-like 33)

HSP 1 Score: 65.9 bits (159), Expect = 2.0e-11
Identity = 31/69 (44.93%), Postives = 42/69 (60.87%), Query Frame = 0


Query: 39  DFTNSNEDSRRLLFQYGFAYKYPKNKYLGYDALRKNNIPCRHRGRSYYDCKKRKKANPYR 98
           +F   +E +RR+L            KY+ Y ALR+N +PC  RG SYY+C++  +ANPY 
Sbjct: 55  EFEMDSEINRRIL---------ATTKYISYGALRRNTVPCSRRGASYYNCRRGAQANPYS 114

Query: 99  RGCIAITGC 108
           RGC AIT C
Sbjct: 115 RGCSAITRC 114

[Close]

BLAST of CsGy6G026110 vs. TAIR10
Match: AT3G16570.1 (rapid alkalinization factor 23)

HSP 1 Score: 65.1 bits (157), Expect = 3.4e-11
Identity = 31/69 (44.93%), Postives = 42/69 (60.87%), Query Frame = 0


Query: 39  DFTNSNEDSRRLLFQYGFAYKYPKNKYLGYDALRKNNIPCRHRGRSYYDCKKRKKANPYR 98
           +F   +E +RR+L            +Y+ Y ALR+N IPC  RG SYY+C++  +ANPY 
Sbjct: 76  EFEMDSEINRRIL---------ATRRYISYGALRRNTIPCSRRGASYYNCRRGAQANPYS 135

Query: 99  RGCIAITGC 108
           RGC AIT C
Sbjct: 136 RGCSAITRC 135

[Close]

BLAST of CsGy6G026110 vs. TAIR10
Match: AT3G05490.1 (ralf-like 22)

HSP 1 Score: 63.5 bits (153), Expect = 9.8e-11
Identity = 29/61 (47.54%), Postives = 39/61 (63.93%), Query Frame = 0


Query: 47  SRRLLFQYGFAYKYPKNKYLGYDALRKNNIPCRHRGRSYYDCKKRKKANPYRRGCIAITG 106
           SRR+L Q          KY+ Y A+R+N++PC  RG SYY+C++  +ANPY RGC  IT 
Sbjct: 66  SRRILAQ---------KKYISYGAMRRNSVPCSRRGASYYNCQRGAQANPYSRGCSTITR 117

Query: 107 C 108
           C
Sbjct: 126 C 117

[Close]

BLAST of CsGy6G026110 vs. Swiss-Prot
Match: sp|Q9FZA0|RLF4_ARATH (Protein RALF-like 4 OS=Arabidopsis thaliana OX=3702 GN=RALFL4 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 6.3e-15
Identity = 33/44 (75.00%), Postives = 39/44 (88.64%), Query Frame = 0


Query: 64  KYLGYDALRKNNIPCRHRGRSYYDCKKRKKANPYRRGCIAITGC 108
           +Y+GYDAL+KNN+PC  RGRSYYDCKKR++ NPYRRGC AIT C
Sbjct: 62  RYIGYDALKKNNVPCSRRGRSYYDCKKRRRNNPYRRGCSAITHC 105

[Close]

BLAST of CsGy6G026110 vs. Swiss-Prot
Match: sp|Q6NME6|RLF19_ARATH (Protein RALF-like 19 OS=Arabidopsis thaliana OX=3702 GN=RALFL19 PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 5.3e-14
Identity = 49/111 (44.14%), Postives = 62/111 (55.86%), Query Frame = 0


Query: 6   LCLFLLLIAVVAAPLCLALSDDWTRSYADV---------PDYDFTNSNEDSRRLLFQYGF 65
           L L LL +AVVA     + +  WT + + V          + D+   +E +RR L     
Sbjct: 7   LILGLLTLAVVAE----SANATWTLTKSCVNGQGCIGEDGELDYLMDSETNRRQL----- 66

Query: 66  AYKYPKNKYLGYDALRKNNIPCRHRGRSYYDCKKRKKANPYRRGCIAITGC 108
                +  Y+ Y ALRKNN+PC  RGRSYYDCKKRK+ANPYRRGC  IT C
Sbjct: 67  ---AARRSYISYGALRKNNVPCSRRGRSYYDCKKRKRANPYRRGCSVITHC 105

[Close]

BLAST of CsGy6G026110 vs. Swiss-Prot
Match: sp|Q945T0|RALF_TOBAC (Rapid alkalinization factor OS=Nicotiana tabacum OX=4097 GN=RALF PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.1e-10
Identity = 32/69 (46.38%), Postives = 42/69 (60.87%), Query Frame = 0


Query: 39  DFTNSNEDSRRLLFQYGFAYKYPKNKYLGYDALRKNNIPCRHRGRSYYDCKKRKKANPYR 98
           +F   +E +RR+L            KY+ Y AL+KN++PC  RG SYY+CK   +ANPY 
Sbjct: 54  EFELDSESNRRIL---------ATKKYISYGALQKNSVPCSRRGASYYNCKPGAQANPYS 113

Query: 99  RGCIAITGC 108
           RGC AIT C
Sbjct: 114 RGCSAITRC 113

[Close]

BLAST of CsGy6G026110 vs. Swiss-Prot
Match: sp|Q8L9P8|RLF33_ARATH (Protein RALF-like 33 OS=Arabidopsis thaliana OX=3702 GN=RALFL33 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.6e-10
Identity = 31/69 (44.93%), Postives = 42/69 (60.87%), Query Frame = 0


Query: 39  DFTNSNEDSRRLLFQYGFAYKYPKNKYLGYDALRKNNIPCRHRGRSYYDCKKRKKANPYR 98
           +F   +E +RR+L            KY+ Y ALR+N +PC  RG SYY+C++  +ANPY 
Sbjct: 55  EFEMDSEINRRIL---------ATTKYISYGALRRNTVPCSRRGASYYNCRRGAQANPYS 114

Query: 99  RGCIAITGC 108
           RGC AIT C
Sbjct: 115 RGCSAITRC 114

[Close]

BLAST of CsGy6G026110 vs. Swiss-Prot
Match: sp|Q9LUS7|RLF23_ARATH (Rapid alkalinization factor 23 OS=Arabidopsis thaliana OX=3702 GN=RALF23 PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 6.1e-10
Identity = 31/69 (44.93%), Postives = 42/69 (60.87%), Query Frame = 0


Query: 39  DFTNSNEDSRRLLFQYGFAYKYPKNKYLGYDALRKNNIPCRHRGRSYYDCKKRKKANPYR 98
           +F   +E +RR+L            +Y+ Y ALR+N IPC  RG SYY+C++  +ANPY 
Sbjct: 76  EFEMDSEINRRIL---------ATRRYISYGALRRNTIPCSRRGASYYNCRRGAQANPYS 135

Query: 99  RGCIAITGC 108
           RGC AIT C
Sbjct: 136 RGCSAITRC 135

[Close]

BLAST of CsGy6G026110 vs. TrEMBL
Match: tr|A0A0A0KHU4|A0A0A0KHU4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G484570 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 1.1e-56
Identity = 109/110 (99.09%), Postives = 109/110 (99.09%), Query Frame = 0


Query: 1   MRSTKLCLFLLLIAVVAAPLCLALSDDWTRSYADVPDYDFTNSNEDSRRLLFQYGFAYKY 60
           MRSTKLCLFLLLIAVVAAPLCLALSDDWTRSYADVPDYDFTNSNEDSRRLLFQYGFAYKY
Sbjct: 1   MRSTKLCLFLLLIAVVAAPLCLALSDDWTRSYADVPDYDFTNSNEDSRRLLFQYGFAYKY 60

Query: 61  PKNKYLGYDALRKNNIPCRHRGRSYYDCKKRKKANPYRRGCIAITGCALF 111
           PKNKYLGYDALRKNNIPCRHRGRSYYDCKKRKKANPYRRGCIAITGCA F
Sbjct: 61  PKNKYLGYDALRKNNIPCRHRGRSYYDCKKRKKANPYRRGCIAITGCARF 110

[Close]

BLAST of CsGy6G026110 vs. TrEMBL
Match: tr|A0A1S3B2H7|A0A1S3B2H7_CUCME (protein RALF-like 19 OS=Cucumis melo OX=3656 GN=LOC103485256 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 1.2e-47
Identity = 96/110 (87.27%), Postives = 101/110 (91.82%), Query Frame = 0


Query: 1   MRSTKLCLFLLLIAVVAAPLCLALSDDWTRSYADVPDYDFTNSNEDSRRLLFQYGFAYKY 60
           MRS KL LFLL+IAVVAAPLCLA SDDWT +YA  P+YDFT +NEDSRRLLFQYGFAYKY
Sbjct: 1   MRSMKLGLFLLVIAVVAAPLCLAFSDDWTHAYA-APNYDFTTNNEDSRRLLFQYGFAYKY 60

Query: 61  PKNKYLGYDALRKNNIPCRHRGRSYYDCKKRKKANPYRRGCIAITGCALF 111
           PKNKYLGYDALRKNN PCRHRGRSYYDCKKR+KANPYRRGCIAITGCA F
Sbjct: 61  PKNKYLGYDALRKNNSPCRHRGRSYYDCKKRRKANPYRRGCIAITGCARF 109

[Close]

BLAST of CsGy6G026110 vs. TrEMBL
Match: tr|A0A0A0KCD7|A0A0A0KCD7_CUCSA (F3H9.8 protein OS=Cucumis sativus OX=3659 GN=Csa_6G199790 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.0e-33
Identity = 81/113 (71.68%), Postives = 88/113 (77.88%), Query Frame = 0


Query: 6   LCLFLLLIAVVAAPLCLALSDDWTRSYADVPDYDF--------TNSNEDSRRLLFQYGFA 65
           LCL LLL+A +A  L +AL  DWTR+Y + PDY F         N  +DSRRLLFQYGFA
Sbjct: 5   LCL-LLLVAAIAITLPVALC-DWTRAYGN-PDYAFWGTAEPATINDVDDSRRLLFQYGFA 64

Query: 66  YKYPKNKYLGYDALRKNNIPCRHRGRSYYDCKKRKKANPYRRGCIAITGCALF 111
           YKYPKNKYLGYDALRKNN PCRHRG SYYDC KR+KANPYRRGCIAITGCA F
Sbjct: 65  YKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARF 114

[Close]

BLAST of CsGy6G026110 vs. TrEMBL
Match: tr|A0A1S4E1Z3|A0A1S4E1Z3_CUCME (protein RALF-like 4 OS=Cucumis melo OX=3656 GN=LOC107991607 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.1e-32
Identity = 80/115 (69.57%), Postives = 88/115 (76.52%), Query Frame = 0


Query: 5   KLCL-FLLLIAVVAAPLCLALSDDWTRSYADVPDYDF--------TNSNEDSRRLLFQYG 64
           KLCL  LLL+A  AA L +AL  DWTR++ + P+Y F         N  +DSRRLLFQYG
Sbjct: 2   KLCLCLLLLVAAFAATLPVALC-DWTRAFGN-PEYAFWGNSAPATINDVDDSRRLLFQYG 61

Query: 65  FAYKYPKNKYLGYDALRKNNIPCRHRGRSYYDCKKRKKANPYRRGCIAITGCALF 111
           FAYKYPKNKYLGYDALRKNN PCR RG SYYDC KR+KANPYRRGCIAITGCA F
Sbjct: 62  FAYKYPKNKYLGYDALRKNNSPCRRRGHSYYDCTKRRKANPYRRGCIAITGCARF 114

[Close]

BLAST of CsGy6G026110 vs. TrEMBL
Match: tr|R0GTL5|R0GTL5_9BRAS (Uncharacterized protein OS=Capsella rubella OX=81985 GN=CARUB_v10012072mg PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 4.4e-13
Identity = 34/44 (77.27%), Postives = 39/44 (88.64%), Query Frame = 0


Query: 64  KYLGYDALRKNNIPCRHRGRSYYDCKKRKKANPYRRGCIAITGC 108
           +Y+GYDAL+KNN+PC  RGRSYYDCKKRK+ NPYRRGC AIT C
Sbjct: 62  RYIGYDALKKNNVPCNRRGRSYYDCKKRKRNNPYRRGCSAITHC 105

The following BLAST results are available for this feature:

BLAST of CsGy6G026110 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004148669.1	1.7e-56	99.09	PREDICTED: protein RALF-like 19 [Cucumis sativus] >KGN48379.1 hypothetical prote...	[more]
XP_008441015.1	1.8e-47	87.27	PREDICTED: protein RALF-like 19 [Cucumis melo]	[more]
XP_004150814.1	1.5e-33	71.68	PREDICTED: protein RALF-like 4 [Cucumis sativus] >KGN47203.1 F3H9.8 protein [Cuc...	[more]
XP_016902249.1	1.7e-32	69.57	PREDICTED: protein RALF-like 4 [Cucumis melo]	[more]
XP_022927734.1	2.7e-22	55.83	protein RALF-like 4 [Cucurbita moschata]	[more]

BLAST of CsGy6G026110 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G28270.1	3.5e-16	75.00	ralf-like 4	[more]
AT2G33775.1	3.0e-15	44.14	ralf-like 19	[more]
AT4G15800.1	2.0e-11	44.93	ralf-like 33	[more]
AT3G16570.1	3.4e-11	44.93	rapid alkalinization factor 23	[more]
AT3G05490.1	9.8e-11	47.54	ralf-like 22	[more]

BLAST of CsGy6G026110 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FZA0\|RLF4_ARATH	6.3e-15	75.00	Protein RALF-like 4 OS=Arabidopsis thaliana OX=3702 GN=RALFL4 PE=3 SV=1	[more]
sp\|Q6NME6\|RLF19_ARATH	5.3e-14	44.14	Protein RALF-like 19 OS=Arabidopsis thaliana OX=3702 GN=RALFL19 PE=3 SV=1	[more]
sp\|Q945T0\|RALF_TOBAC	2.1e-10	46.38	Rapid alkalinization factor OS=Nicotiana tabacum OX=4097 GN=RALF PE=1 SV=1	[more]
sp\|Q8L9P8\|RLF33_ARATH	3.6e-10	44.93	Protein RALF-like 33 OS=Arabidopsis thaliana OX=3702 GN=RALFL33 PE=2 SV=1	[more]
sp\|Q9LUS7\|RLF23_ARATH	6.1e-10	44.93	Rapid alkalinization factor 23 OS=Arabidopsis thaliana OX=3702 GN=RALF23 PE=1 SV...	[more]

BLAST of CsGy6G026110 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KHU4\|A0A0A0KHU4_CUCSA	1.1e-56	99.09	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G484570 PE=4 SV=1	[more]
tr\|A0A1S3B2H7\|A0A1S3B2H7_CUCME	1.2e-47	87.27	protein RALF-like 19 OS=Cucumis melo OX=3656 GN=LOC103485256 PE=4 SV=1	[more]
tr\|A0A0A0KCD7\|A0A0A0KCD7_CUCSA	1.0e-33	71.68	F3H9.8 protein OS=Cucumis sativus OX=3659 GN=Csa_6G199790 PE=4 SV=1	[more]
tr\|A0A1S4E1Z3\|A0A1S4E1Z3_CUCME	1.1e-32	69.57	protein RALF-like 4 OS=Cucumis melo OX=3656 GN=LOC107991607 PE=4 SV=1	[more]
tr\|R0GTL5\|R0GTL5_9BRAS	4.4e-13	77.27	Uncharacterized protein OS=Capsella rubella OX=81985 GN=CARUB_v10012072mg PE=4 S...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008801	RALF

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G026110.1	CsGy6G026110.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008801	Rapid ALkalinization Factor	PFAM	PF05498	RALF	coord: 45..108 e-value: 1.5E-20 score: 73.7
None	No IPR available	PANTHER	PTHR33136:SF16	PROTEIN RALF-LIKE 19-RELATED	coord: 6..108
None	No IPR available	PANTHER	PTHR33136	FAMILY NOT NAMED	coord: 6..108

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy6G026110	Csa6G484570	Cucumber (Chinese Long) v2	cgybcuB281
CsGy6G026110	MELO3C008034	Melon (DHL92) v3.5.1	cgybmeB446
CsGy6G026110	CSPI06G26700	Wild cucumber (PI 183967)	cgybcpiB287
CsGy6G026110	MELO3C008034.2	Melon (DHL92) v3.6.1	cgybmedB443
CsGy6G026110	CsaV3_6G041870	Cucumber (Chinese Long) v3	cgybcucB298
CsGy6G026110	Bhi03G001067	Wax gourd	cgybwgoB593

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy6G026110	Silver-seed gourd	carcgybB0255
CsGy6G026110	Silver-seed gourd	carcgybB0799
CsGy6G026110	Watermelon (97103) v2	cgybwmbB394
CsGy6G026110	Watermelon (97103) v2	cgybwmbB416
CsGy6G026110	Cucumber (Gy14) v2	cgybcgybB066
CsGy6G026110	Cucurbita maxima (Rimu)	cgybcmaB817
CsGy6G026110	Cucurbita maxima (Rimu)	cgybcmaB831
CsGy6G026110	Cucurbita maxima (Rimu)	cgybcmaB861
CsGy6G026110	Cucurbita moschata (Rifu)	cgybcmoB796
CsGy6G026110	Cucurbita moschata (Rifu)	cgybcmoB811
CsGy6G026110	Cucurbita moschata (Rifu)	cgybcmoB843
CsGy6G026110	Cucurbita pepo (Zucchini)	cgybcpeB710
CsGy6G026110	Cucurbita pepo (Zucchini)	cgybcpeB810
CsGy6G026110	Cucurbita pepo (Zucchini)	cgybcpeB866
CsGy6G026110	Cucumber (Chinese Long) v2	cgybcuB251
CsGy6G026110	Bottle gourd (USVL1VR-Ls)	cgyblsiB385
CsGy6G026110	Bottle gourd (USVL1VR-Ls)	cgyblsiB398
CsGy6G026110	Watermelon (Charleston Gray)	cgybwcgB399
CsGy6G026110	Watermelon (Charleston Gray)	cgybwcgB411
CsGy6G026110	Watermelon (97103) v1	cgybwmB469
CsGy6G026110	Watermelon (97103) v1	cgybwmB496
CsGy6G026110	Wild cucumber (PI 183967)	cgybcpiB259