CsGy6G023630 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy6G023630
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	DNA-binding protein S1FA
Location	Chr6 : 23727222 .. 23729220 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAACTATGAGATTTTAATATTGGGAGATGTGGGTTTATTATCAAATCTATATACTTCTTTTTTAATATAGTTTATGTACTCTTTCTTATGTTTGATTTTGAAGGTATAATTGGTAGAATTGTGGTTTTAAAGTATAAATTGATATTTGTAAAAACAATAAACAGAACGGCGTCGTTTGAAACCCCCATGGGCGGAAATATCGTAAATCCACTGACTATCCGCCATTTTCATATCTTCGTTCCTTTTGTATTTTTTCTCGAAGCTTCGTCAGTTCATCGTTTTGGTACATAACTTCAACACACCAGCTCTCTCCCATTCTCAATTTCAGCCATGGAAGATGATTTCGACTTCGGCGACAAGGTTCCGCCGGCCGTCAACCGCATGGTACTCGTAACCTCCCTTTACAGTATCACCTTCTCATTTCCTTTCTTCTCTGTTCATCTCCTAAGTCGAGATCTCTTTTAATGCTCCTTTCCCCTCTCTTGTTTTTACCTCGAGCTTTGGATTTCGACTTGGCTCTATGTGTTTACTTTGATAGTTTTACCTATAATTGTCGAGGTTTTGCTGTTCTGATTTGCTCTCATTTTTTGAATTTCGTTCTTGAGGTCTGATTGTCTCTGCAATTGAATGTCGCAAATAATTCAGTTGAATTTTGTAGGGATCTGCTCTCCAAGTACCATTATAAAAATGCTTTTGGTAAATGAGTGTTCTGTTTCTTATATACGTACTTTTCTCGGTACTTGACTTGTATTCTTATTTGTTTGTTCATATTTTGGAATCGAAGATCTATTTTCATGAAGAATAAAGCTGTTTTTTTTTTCCTTAAAGAGGTTTTAATGATGATCAGGATGCATGTGATCAGTGGGTTCTTTGTAGAATGGGAAAGAATTCAAAAATTGTGCACATTTTTGCAATTTCCTCAACATGGACTGAAATTTGCTACTATGGGTTGGGTTATTACACGAATTTGTTGATTCGATTCTACACTAGACCGAAATTGAAATTGAAGAATGGTTGTTAATTTATCCTTTCCCTGATCTGTTCGATACTGTTAGAGGATGTTCCATGCATCTTTGATATTGTATCCTCAGTATCCTTCATAGCTGAGAATCAGATTAATGGTGAGTAGGAATAAGGCTACAATTTATCTCCTTTTCGTGTTTTGAAGCTACCCTTACACTTGTGACTTGTGAGTATTCTTCGTATTCTTGTGGAATAATCATGGGGGGAAAATTCTCTTAATCTGATACAATAACAAGACAGAAATAAGACATTAAACATCAGATATTTGTTTATTGTTTTAGTGTAGGGATTGAAATCTCTGAACTTTTGGTTCAACATATGTATAAACTCGACACGTGCTGTTAAGACTTAAGTCTCCATGCATGCGACTGCTGACAAGACAATCAACTTTCTTTCCGGGCTTTACACCTTCTACAATTCTTTCCTTGTTGTATATGTTAAGTGGTTCATGTAATGAGCAGTTAATATTGGGCTTGGTTCACAGGGGAATGTGATTAGAGATGGAGAAGCAAGAGGATTCAACCCAGGACTGATTGTGCTGCTTGTAGTTGGTGGGTTGCTATTTGCATTTCTTGTTGGGAATTATGCTCTCTACATGTATGCGCAGAAAACACTCCCCCCAAAAAAGAAGAAACCAGTTTCCAAAAAGAAGATGAAGAGGGAGAGATTGAAGCAAGGTGTCTCTGCACCTGGAGAGTAGAAGTGTAGTGGTAGACTTCTCTTATGTTTTGTATGCCTGTCCCTGATTTGGTTGAACTAACAAGTTCTACCAAATGAATTTCAATGTTTGAAGAGTTGTTTTGCCTATGTTGTTAAGTTGGTTAGAATCTGAACATATAAGTAGAAGTTTATTGTCGCTTTGTATCCTTAGAGATGAGAAATAATAACAACATAGTTTATGTGGTATATTTTGATCAAATGCTAACCTTTTGGTGCCCTTCCTAAGATTTTCTTATCCACATTGTCTTATTAAAT

mRNA sequence

GAAACTATGAGATTTTAATATTGGGAGATGTGGGTTTATTATCAAATCTATATACTTCTTTTTTAATATAGTTTATGTACTCTTTCTTATGTTTGATTTTGAAGGTATAATTGGTAGAATTGTGGTTTTAAAGTATAAATTGATATTTGTAAAAACAATAAACAGAACGGCGTCGTTTGAAACCCCCATGGGCGGAAATATCGTAAATCCACTGACTATCCGCCATTTTCATATCTTCGTTCCTTTTGTATTTTTTCTCGAAGCTTCGTCAGTTCATCGTTTTGGTACATAACTTCAACACACCAGCTCTCTCCCATTCTCAATTTCAGCCATGGAAGATGATTTCGACTTCGGCGACAAGGTTCCGCCGGCCGTCAACCGCATGGGGAATGTGATTAGAGATGGAGAAGCAAGAGGATTCAACCCAGGACTGATTGTGCTGCTTGTAGTTGGTGGGTTGCTATTTGCATTTCTTGTTGGGAATTATGCTCTCTACATGTATGCGCAGAAAACACTCCCCCCAAAAAAGAAGAAACCAGTTTCCAAAAAGAAGATGAAGAGGGAGAGATTGAAGCAAGGTGTCTCTGCACCTGGAGAGTAGAAGTGTAGTGGTAGACTTCTCTTATGTTTTGTATGCCTGTCCCTGATTTGGTTGAACTAACAAGTTCTACCAAATGAATTTCAATGTTTGAAGAGTTGTTTTGCCTATGTTGTTAAGTTGGTTAGAATCTGAACATATAAGTAGAAGTTTATTGTCGCTTTGTATCCTTAGAGATGAGAAATAATAACAACATAGTTTATGTGGTATATTTTGATCAAATGCTAACCTTTTGGTGCCCTTCCTAAGATTTTCTTATCCACATTGTCTTATTAAAT

Coding sequence (CDS)

ATGGAAGATGATTTCGACTTCGGCGACAAGGTTCCGCCGGCCGTCAACCGCATGGGGAATGTGATTAGAGATGGAGAAGCAAGAGGATTCAACCCAGGACTGATTGTGCTGCTTGTAGTTGGTGGGTTGCTATTTGCATTTCTTGTTGGGAATTATGCTCTCTACATGTATGCGCAGAAAACACTCCCCCCAAAAAAGAAGAAACCAGTTTCCAAAAAGAAGATGAAGAGGGAGAGATTGAAGCAAGGTGTCTCTGCACCTGGAGAGTAG

Protein sequence

MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGVSAPGE

Homology

[Close]

BLAST of CsGy6G023630 vs. NCBI nr
Match: XP_004143239.1 (PREDICTED: DNA-binding protein S1FA-like [Cucumis sativus] >KGN48135.1 DNA-binding protein S1FA [Cucumis sativus])

HSP 1 Score: 156.0 bits (393), Expect = 6.0e-35
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQK 60
          MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQK
Sbjct: 1  MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQK 60

Query: 61 TLPPKXXXXXXXXXXXRERLKQGVSAPGE 90
          TLPPKXXXXXXXXXXXRERLKQGVSAPGE
Sbjct: 61 TLPPKXXXXXXXXXXXRERLKQGVSAPGE 89

[Close]

BLAST of CsGy6G023630 vs. NCBI nr
Match: XP_008449267.1 (PREDICTED: DNA-binding protein S1FA-like [Cucumis melo])

HSP 1 Score: 152.9 bits (385), Expect = 5.1e-34
Identity = 88/89 (98.88%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 1  MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQK 60
          MEDDFDFGDKVPPAVNRM NVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQK
Sbjct: 1  MEDDFDFGDKVPPAVNRMRNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQK 60

Query: 61 TLPPKXXXXXXXXXXXRERLKQGVSAPGE 90
          TLPPKXXXXXXXXXXXRERLKQGVSAPGE
Sbjct: 61 TLPPKXXXXXXXXXXXRERLKQGVSAPGE 89

[Close]

BLAST of CsGy6G023630 vs. NCBI nr
Match: XP_022962636.1 (DNA-binding protein S1FA-like [Cucurbita moschata] >XP_023517292.1 DNA-binding protein S1FA-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 145.2 bits (365), Expect = 1.1e-31
Identity = 71/89 (79.78%), Postives = 75/89 (84.27%), Query Frame = 0


Query: 1  MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQK 60
          MEDDFDFGDKVPPAVNRMGNVIR+ +ARGFNPGLIVLLVVGGLL AFL GNYALY+YAQK
Sbjct: 1  MEDDFDFGDKVPPAVNRMGNVIREADARGFNPGLIVLLVVGGLLLAFLAGNYALYVYAQK 60

Query: 61 TLPPKXXXXXXXXXXXRERLKQGVSAPGE 90
          TLPPK           RERLKQG+SAPGE
Sbjct: 61 TLPPKRKKPVSKKKMKRERLKQGISAPGE 89

[Close]

BLAST of CsGy6G023630 vs. NCBI nr
Match: XP_022972581.1 (DNA-binding protein S1FA-like [Cucurbita maxima])

HSP 1 Score: 141.7 bits (356), Expect = 1.2e-30
Identity = 70/89 (78.65%), Postives = 73/89 (82.02%), Query Frame = 0


Query: 1  MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQK 60
          MEDDFDFGDKVPPAVNRMGNVIRD +ARGFNPGLIVLLVVGGLL AFL GNYALY+YAQ 
Sbjct: 1  MEDDFDFGDKVPPAVNRMGNVIRDSDARGFNPGLIVLLVVGGLLLAFLAGNYALYVYAQN 60

Query: 61 TLPPKXXXXXXXXXXXRERLKQGVSAPGE 90
          TLP K           RERLKQG+SAPGE
Sbjct: 61 TLPQKRKKPVSKKKMKRERLKQGISAPGE 89

[Close]

BLAST of CsGy6G023630 vs. NCBI nr
Match: XP_022143745.1 (DNA-binding protein S1FA-like [Momordica charantia])

HSP 1 Score: 132.5 bits (332), Expect = 7.1e-28
Identity = 75/89 (84.27%), Postives = 83/89 (93.26%), Query Frame = 0


Query: 1  MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQK 60
          M+DDF+FGDKVPP+V+RMG VIRD +A GFNPGL+VLLVVGGLL AFLVGNYALY+YAQK
Sbjct: 1  MDDDFEFGDKVPPSVHRMGKVIRDADAGGFNPGLVVLLVVGGLLLAFLVGNYALYVYAQK 60

Query: 61 TLPPKXXXXXXXXXXXRERLKQGVSAPGE 90
          TLPP XXXXXXXXXXX ERLKQG+SAPGE
Sbjct: 61 TLPPXXXXXXXXXXXXXERLKQGISAPGE 89

[Close]

BLAST of CsGy6G023630 vs. TAIR10
Match: AT3G53370.1 (S1FA-like DNA-binding protein)

HSP 1 Score: 73.9 bits (180), Expect = 5.4e-14
Identity = 43/64 (67.19%), Postives = 47/64 (73.44%), Query Frame = 0


Query: 26 EARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKXXXXXXXXXXXRERLKQGVS 85
          EA+G NPGLIVLLVVGG L  FL+ NY LY+YAQK LPP+     XXXXXX   LKQGV 
Sbjct: 13 EAKGLNPGLIVLLVVGGPLLVFLIANYVLYVYAQKNLPPRKKKPVXXXXXXXXXLKQGVP 72

Query: 86 APGE 90
           PGE
Sbjct: 73 VPGE 76

[Close]

BLAST of CsGy6G023630 vs. TAIR10
Match: AT3G09735.1 (S1FA-like DNA-binding protein)

HSP 1 Score: 67.8 bits (164), Expect = 3.9e-12
Identity = 45/64 (70.31%), Postives = 49/64 (76.56%), Query Frame = 0


Query: 26 EARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKXXXXXXXXXXXRERLKQGVS 85
          E++G NPGLIVLLV+GGLL  FLVGN+ LY YAQK LPP XXXXXXXXXXX      GV 
Sbjct: 10 ESKGLNPGLIVLLVIGGLLLTFLVGNFILYTYAQKNLPPXXXXXXXXXXXXXXXXXXGVQ 69

Query: 86 APGE 90
           PGE
Sbjct: 70 VPGE 73

[Close]

BLAST of CsGy6G023630 vs. Swiss-Prot
Match: sp|P42552|S1FA_SPIOL (DNA-binding protein S1FA OS=Spinacia oleracea OX=3562 GN=S1FA PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 3.3e-16
Identity = 51/68 (75.00%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 22 IRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKXXXXXXXXXXXRERLK 81
          + + EA+G NPGLIVLLV+GGLL  FLVGN+ LY YAQK LPPK XXXXXXXXX RERLK
Sbjct: 3  VNEVEAKGLNPGLIVLLVIGGLLLTFLVGNFILYTYAQKNLPPKKXXXXXXXXXKRERLK 62

Query: 82 QGVSAPGE 90
          QGV+ PGE
Sbjct: 63 QGVAPPGE 70

[Close]

BLAST of CsGy6G023630 vs. Swiss-Prot
Match: sp|Q7XLX6|S1FA2_ORYSJ (DNA-binding protein S1FA2 OS=Oryza sativa subsp. japonica OX=39947 GN=S1FA2 PE=3 SV=2)

HSP 1 Score: 76.3 bits (186), Expect = 2.0e-13
Identity = 46/70 (65.71%), Postives = 54/70 (77.14%), Query Frame = 0


Query: 20 NVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKXXXXXXXXXXXRER 79
          NV+ +   +G NPG+IVL+VV   L  F VGNYALY+YAQKTLPP+   XXXXXXXX  +
Sbjct: 11 NVVIEEVNKGLNPGMIVLIVVATFLLLFFVGNYALYVYAQKTLPPRKKKXXXXXXXXXXK 70

Query: 80 LKQGVSAPGE 90
          LKQGVSAPGE
Sbjct: 71 LKQGVSAPGE 80

[Close]

BLAST of CsGy6G023630 vs. Swiss-Prot
Match: sp|P42551|S1FA1_ARATH (DNA-binding protein S1FA1 OS=Arabidopsis thaliana OX=3702 GN=S1FA1 PE=3 SV=2)

HSP 1 Score: 73.9 bits (180), Expect = 9.8e-13
Identity = 43/64 (67.19%), Postives = 47/64 (73.44%), Query Frame = 0


Query: 26 EARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKXXXXXXXXXXXRERLKQGVS 85
          EA+G NPGLIVLLVVGG L  FL+ NY LY+YAQK LPP+     XXXXXX   LKQGV 
Sbjct: 13 EAKGLNPGLIVLLVVGGPLLVFLIANYVLYVYAQKNLPPRKKKPVXXXXXXXXXLKQGVP 72

Query: 86 APGE 90
           PGE
Sbjct: 73 VPGE 76

[Close]

BLAST of CsGy6G023630 vs. Swiss-Prot
Match: sp|P42553|S1FA1_ORYSJ (DNA-binding protein S1FA1 OS=Oryza sativa subsp. japonica OX=39947 GN=S1FA1 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.7e-12
Identity = 48/74 (64.86%), Postives = 54/74 (72.97%), Query Frame = 0


Query: 16 NRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKXXXXXXXXXX 75
          ++  N+I +   +G NPG IVLLVV  LL  F VGNYALYMYAQKTLPP+  XXXXXXXX
Sbjct: 3  DQSNNMIIEEVNKGLNPGTIVLLVVATLLILFFVGNYALYMYAQKTLPPRKKXXXXXXXX 62

Query: 76 XRERLKQGVSAPGE 90
          X     QGVSAPGE
Sbjct: 63 XXXXXXQGVSAPGE 76

[Close]

BLAST of CsGy6G023630 vs. Swiss-Prot
Match: sp|Q93VI0|S1FA3_ARATH (DNA-binding protein S1FA3 OS=Arabidopsis thaliana OX=3702 GN=S1FA3 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 7.0e-11
Identity = 45/64 (70.31%), Postives = 49/64 (76.56%), Query Frame = 0


Query: 26 EARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKXXXXXXXXXXXRERLKQGVS 85
          E++G NPGLIVLLV+GGLL  FLVGN+ LY YAQK LPP XXXXXXXXXXX      GV 
Sbjct: 10 ESKGLNPGLIVLLVIGGLLLTFLVGNFILYTYAQKNLPPXXXXXXXXXXXXXXXXXXGVQ 69

Query: 86 APGE 90
           PGE
Sbjct: 70 VPGE 73

[Close]

BLAST of CsGy6G023630 vs. TrEMBL
Match: tr|A0A0A0KEM3|A0A0A0KEM3_CUCSA (DNA-binding protein S1FA OS=Cucumis sativus OX=3659 GN=Csa_6G445000 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 4.0e-35
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQK 60
          MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQK
Sbjct: 1  MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQK 60

Query: 61 TLPPKXXXXXXXXXXXRERLKQGVSAPGE 90
          TLPPKXXXXXXXXXXXRERLKQGVSAPGE
Sbjct: 61 TLPPKXXXXXXXXXXXRERLKQGVSAPGE 89

[Close]

BLAST of CsGy6G023630 vs. TrEMBL
Match: tr|A0A1S3BLN5|A0A1S3BLN5_CUCME (DNA-binding protein S1FA-like OS=Cucumis melo OX=3656 GN=LOC103491199 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 3.4e-34
Identity = 88/89 (98.88%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 1  MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQK 60
          MEDDFDFGDKVPPAVNRM NVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQK
Sbjct: 1  MEDDFDFGDKVPPAVNRMRNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQK 60

Query: 61 TLPPKXXXXXXXXXXXRERLKQGVSAPGE 90
          TLPPKXXXXXXXXXXXRERLKQGVSAPGE
Sbjct: 61 TLPPKXXXXXXXXXXXRERLKQGVSAPGE 89

[Close]

BLAST of CsGy6G023630 vs. TrEMBL
Match: tr|A0A2I4GVG4|A0A2I4GVG4_9ROSI (DNA-binding protein S1FA-like OS=Juglans regia OX=51240 GN=LOC109011227 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 4.4e-26
Identity = 61/89 (68.54%), Postives = 71/89 (79.78%), Query Frame = 0


Query: 1  MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQK 60
          M+++FDF DKVPP+ +RMGNVI+D EA+GFNPGLIVLLVV GLL  FLVGNY LY+YAQK
Sbjct: 1  MDEEFDFTDKVPPSFDRMGNVIKDAEAKGFNPGLIVLLVVVGLLLIFLVGNYVLYIYAQK 60

Query: 61 TLPPKXXXXXXXXXXXRERLKQGVSAPGE 90
          TLPP+           +ERLKQGVSAPGE
Sbjct: 61 TLPPRKKKPISKKKMRKERLKQGVSAPGE 89

[Close]

BLAST of CsGy6G023630 vs. TrEMBL
Match: tr|A0A067KBA1|A0A067KBA1_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_16483 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 4.9e-25
Identity = 69/90 (76.67%), Postives = 77/90 (85.56%), Query Frame = 0


Query: 1  MEDDFDFGDKVPPAV-NRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQ 60
          M+DDF+F D  PP+   RMGNV+ D EA+GFNPGLIVLLVVGGL+ AFL+GNY LY+YAQ
Sbjct: 1  MDDDFEFADHSPPSFQQRMGNVVNDVEAKGFNPGLIVLLVVGGLVLAFLIGNYVLYVYAQ 60

Query: 61 KTLPPKXXXXXXXXXXXRERLKQGVSAPGE 90
          KTLPPK  XXXXXXXX RERLKQGVSAPGE
Sbjct: 61 KTLPPKKKXXXXXXXXKRERLKQGVSAPGE 90

[Close]

BLAST of CsGy6G023630 vs. TrEMBL
Match: tr|A0A1U7ZY66|A0A1U7ZY66_NELNU (DNA-binding protein S1FA-like OS=Nelumbo nucifera OX=4432 GN=LOC104594799 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 8.3e-25
Identity = 64/89 (71.91%), Postives = 71/89 (79.78%), Query Frame = 0


Query: 1  MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQK 60
          M +DF+F DKVPP+    GNV++D EA+GFNPGLIVLLVV GLL  FLVGNYALYMYAQK
Sbjct: 1  MAEDFEFSDKVPPSFEHGGNVMKDAEAKGFNPGLIVLLVVVGLLLVFLVGNYALYMYAQK 60

Query: 61 TLPPKXXXXXXXXXXXRERLKQGVSAPGE 90
           LPP+     XXXX  RERLKQGVSAPGE
Sbjct: 61 ALPPRKKKPVXXXXMKRERLKQGVSAPGE 89

The following BLAST results are available for this feature:

BLAST of CsGy6G023630 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143239.1	6.0e-35	100.00	PREDICTED: DNA-binding protein S1FA-like [Cucumis sativus] >KGN48135.1 DNA-bindi...	[more]
XP_008449267.1	5.1e-34	98.88	PREDICTED: DNA-binding protein S1FA-like [Cucumis melo]	[more]
XP_022962636.1	1.1e-31	79.78	DNA-binding protein S1FA-like [Cucurbita moschata] >XP_023517292.1 DNA-binding p...	[more]
XP_022972581.1	1.2e-30	78.65	DNA-binding protein S1FA-like [Cucurbita maxima]	[more]
XP_022143745.1	7.1e-28	84.27	DNA-binding protein S1FA-like [Momordica charantia]	[more]

BLAST of CsGy6G023630 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G53370.1	5.4e-14	67.19	S1FA-like DNA-binding protein	[more]
AT3G09735.1	3.9e-12	70.31	S1FA-like DNA-binding protein	[more]

BLAST of CsGy6G023630 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P42552\|S1FA_SPIOL	3.3e-16	75.00	DNA-binding protein S1FA OS=Spinacia oleracea OX=3562 GN=S1FA PE=3 SV=1	[more]
sp\|Q7XLX6\|S1FA2_ORYSJ	2.0e-13	65.71	DNA-binding protein S1FA2 OS=Oryza sativa subsp. japonica OX=39947 GN=S1FA2 PE=3...	[more]
sp\|P42551\|S1FA1_ARATH	9.8e-13	67.19	DNA-binding protein S1FA1 OS=Arabidopsis thaliana OX=3702 GN=S1FA1 PE=3 SV=2	[more]
sp\|P42553\|S1FA1_ORYSJ	1.7e-12	64.86	DNA-binding protein S1FA1 OS=Oryza sativa subsp. japonica OX=39947 GN=S1FA1 PE=3...	[more]
sp\|Q93VI0\|S1FA3_ARATH	7.0e-11	70.31	DNA-binding protein S1FA3 OS=Arabidopsis thaliana OX=3702 GN=S1FA3 PE=3 SV=1	[more]

BLAST of CsGy6G023630 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KEM3\|A0A0A0KEM3_CUCSA	4.0e-35	100.00	DNA-binding protein S1FA OS=Cucumis sativus OX=3659 GN=Csa_6G445000 PE=4 SV=1	[more]
tr\|A0A1S3BLN5\|A0A1S3BLN5_CUCME	3.4e-34	98.88	DNA-binding protein S1FA-like OS=Cucumis melo OX=3656 GN=LOC103491199 PE=4 SV=1	[more]
tr\|A0A2I4GVG4\|A0A2I4GVG4_9ROSI	4.4e-26	68.54	DNA-binding protein S1FA-like OS=Juglans regia OX=51240 GN=LOC109011227 PE=4 SV=...	[more]
tr\|A0A067KBA1\|A0A067KBA1_JATCU	4.9e-25	76.67	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_16483 PE=4 SV=1	[more]
tr\|A0A1U7ZY66\|A0A1U7ZY66_NELNU	8.3e-25	71.91	DNA-binding protein S1FA-like OS=Nelumbo nucifera OX=4432 GN=LOC104594799 PE=4 S...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **INTERPRO**
Term	Definition
IPR006779	S1FA_DNA-bd

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G023630.1	CsGy6G023630.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006779	DNA binding protein S1FA	PFAM	PF04689	S1FA	coord: 26..89 e-value: 1.5E-40 score: 137.1
IPR006779	DNA binding protein S1FA	PANTHER	PTHR35298	FAMILY NOT NAMED	coord: 1..89
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..89
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..79
None	No IPR available	PANTHER	PTHR35298:SF1	SUBFAMILY NOT NAMED	coord: 1..89

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy6G023630	Csa6G445000	Cucumber (Chinese Long) v2	cgybcuB281
CsGy6G023630	MELO3C014253	Melon (DHL92) v3.5.1	cgybmeB431
CsGy6G023630	CSPI06G24230	Wild cucumber (PI 183967)	cgybcpiB287
CsGy6G023630	CmaCh03G012490	Cucurbita maxima (Rimu)	cgybcmaB831
CsGy6G023630	CmaCh07G009350	Cucurbita maxima (Rimu)	cgybcmaB861
CsGy6G023630	CmoCh07G009790	Cucurbita moschata (Rifu)	cgybcmoB843
CsGy6G023630	CmoCh03G012470	Cucurbita moschata (Rifu)	cgybcmoB811
CsGy6G023630	Cp4.1LG19g04200	Cucurbita pepo (Zucchini)	cgybcpeB810
CsGy6G023630	CsaV3_3G035680	Cucumber (Chinese Long) v3	cgybcucB268
CsGy6G023630	CsaV3_6G039400	Cucumber (Chinese Long) v3	cgybcucB298
CsGy6G023630	Bhi03G001300	Wax gourd	cgybwgoB594
CsGy6G023630	Bhi11G001795	Wax gourd	cgybwgoB504
CsGy6G023630	Carg00992	Silver-seed gourd	carcgybB0177
CsGy6G023630	Carg15280	Silver-seed gourd	carcgybB0555

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy6G023630	Watermelon (97103) v2	cgybwmbB431
CsGy6G023630	Cucurbita pepo (Zucchini)	cgybcpeB710
CsGy6G023630	Bottle gourd (USVL1VR-Ls)	cgyblsiB398
CsGy6G023630	Bottle gourd (USVL1VR-Ls)	cgyblsiB451
CsGy6G023630	Melon (DHL92) v3.6.1	cgybmedB426
CsGy6G023630	Watermelon (Charleston Gray)	cgybwcgB426
CsGy6G023630	Watermelon (97103) v1	cgybwmB472
CsGy6G023630	Silver-seed gourd	carcgybB0426