CSPI06G24230 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI06G24230
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	DNA-binding protein S1FA
Location	Chr6 : 21737742 .. 21739530 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGTTTGAAACCCCCATGGGCGGAAATACCGTAAATCCACTGATTATCCGCCATTTTCATATCTTCGTTCCTTTTGTATTTTTTCTCGAAGCTTCGTCAGTTCATCGTTTTGGTACATAACTACAACACACCAGCTCTCTCCCATTCTCAATTTCAGCCATGGAAGATGATTTCGACTTCGGCGACAAGGTTCCGCCGGCCGTCAACCGCATGGTACTCGTAACCTCCCTTTACAGTATCACCTTCTCATTTCCTTTCTTCTCTGTTCATCTCCTAAGTCGAGATCTCTTTTAATGCTCCTTTCCCCTCTCTTGTTTTTACCTCGAGCTTTGGATTTCGACTTGGTTCTATGTGTTTACTTTGATAGTTTTACCTATAATTGTCGAGGTTTTGCTGTTCTGATTTGCTCTCATTTTTTGAATTTCGTTCTTGAGGTCTGATTGTCTCTGCAATTGAATGTCGCAAATAATTCAGTTGAATTTTGTAGGGATCTGCTCTCCAAGTACCATTATAAAAATGCTTTTGGTAAATGAGTGTTCTGTTTCTTATATACATACTTTTCTCGGTACTTGACTTGTATTCTTATTTGTTTGTTCATATTTTGGAATCGAAGATCTATTTTCATGAAGAATAAAGCTGTTTTTTTTTCCTTAAAGAGGTTTTAATGATGATCAGGATGCATGTGATCAGTGGGTTCTTTGTAGAATGAGAAAGAATTCAAAAATTGTGCACATTTTTGCAATTTCCTCAACATGGACTGAAATTTGCTACTATGGGTTGGGTTATTACACGAATTTGTTGATTCGATTCTACACTAGACCGAAATTGAAATTGAAGAATGGTTGTTAATTTATCCTTTCCCTGATCTGTTCGATACTGTTAGAGGATGTTCCATGCATCTTTGATATTGTATCCTCAGTATCCTTCATAGCTGAGAATCAGATTAATGGTGAGTAGGAATAAGGCTACAATTTATCTCCTTTTCGTGTTTTGAAGCTACCCTTACACTTGTGACTTGTGAGTATTCTTCGTATCCTTGTGGAATAATCATGAGAGGAAAATTCTCTTAATCTGATACAATAACAAGACAGAAATAAGACATTAAACATCAGATATTTGTTTATTGTTTTAGGGTAGGGATTGAAATCTCTGAACTTTTGGTTCAACATATGTCTAAACTCGACACGTGCTGTTAAGACTTAAGTCTCCATGCATGCGACTGCTGACAAGACAATCAACTTTCTTTCCGGGCTTTACACCTTCTACAATTCTTTCCTTGTTGTATATGTTAAAGTGGTTCATGTAATGAGCAGTTAATATTGGGCTTGGTTCACAGGGGAATGTGATTAGAGATGGAGAAGCAAGAGGATTCAACCCAGGACTGATTGTGCTGCTTGTAGTTGGTGGGTTGCTATTTGCATTTCTTGTTGGGAATTATGCTCTCTACATGTATGCGCAGAAAACACTCCCCCCAAAAAAGAAGAAACCAGTTTCCAAAAAGAAGATGAAGAGGGAGAGATTGAAGCAAGGTGTCTCTGCACCTGGAGAGTAGAAGTGTAGTGGTAGACTTCTCTTATGTTTTGTATGCCTGTCCTTGATTTGGTTGAACTAACAAGTTCTACCAAATGAATTTCAATGTTTGAAGAGTTGTTTTGCCTATGTTGTTAAGTTGGTTAGAATCTGAACATATAAGTAGAAGTTTATTGTCGCTTTGTATCCTTAGAGATGAGAAATAATAACAACATAGTTTATGTGGTATATTTTGATCAAATGCTAACCTTTTGGTGCCC

mRNA sequence

ATGGAAGATGATTTCGACTTCGGCGACAAGGTTCCGCCGGCCGTCAACCGCATGGGGAATGTGATTAGAGATGGAGAAGCAAGAGGATTCAACCCAGGACTGATTGTGCTGCTTGTAGTTGGTGGGTTGCTATTTGCATTTCTTGTTGGGAATTATGCTCTCTACATGTATGCGCAGAAAACACTCCCCCCAAAAAAGAAGAAACCAGTTTCCAAAAAGAAGATGAAGAGGGAGAGATTGAAGCAAGGTGTCTCTGCACCTGGAGAGTAG

Coding sequence (CDS)

ATGGAAGATGATTTCGACTTCGGCGACAAGGTTCCGCCGGCCGTCAACCGCATGGGGAATGTGATTAGAGATGGAGAAGCAAGAGGATTCAACCCAGGACTGATTGTGCTGCTTGTAGTTGGTGGGTTGCTATTTGCATTTCTTGTTGGGAATTATGCTCTCTACATGTATGCGCAGAAAACACTCCCCCCAAAAAAGAAGAAACCAGTTTCCAAAAAGAAGATGAAGAGGGAGAGATTGAAGCAAGGTGTCTCTGCACCTGGAGAGTAG

Homology

[Close]

BLAST of CSPI06G24230 vs. Swiss-Prot
Match: S1FA_SPIOL (DNA-binding protein S1FA OS=Spinacia oleracea GN=S1FA PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.3e-22
Identity = 52/68 (76.47%), Postives = 59/68 (86.76%), Query Frame = 1


Query: 22 IRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLK 81
          + + EA+G NPGLIVLLV+GGLL  FLVGN+ LY YAQK LPPKKKKP+SKKKMKRERLK
Sbjct: 3  VNEVEAKGLNPGLIVLLVIGGLLLTFLVGNFILYTYAQKNLPPKKKKPISKKKMKRERLK 62

Query: 82 QGVSAPGE 90
          QGV+ PGE
Sbjct: 63 QGVAPPGE 70

[Close]

BLAST of CSPI06G24230 vs. Swiss-Prot
Match: S1FA1_ORYSJ (DNA-binding protein S1FA1 OS=Oryza sativa subsp. japonica GN=S1FA1 PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.0e-21
Identity = 53/74 (71.62%), Postives = 61/74 (82.43%), Query Frame = 1


Query: 16 NRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKKKKPVSKKKM 75
          ++  N+I +   +G NPG IVLLVV  LL  F VGNYALYMYAQKTLPP+KKKPVSKKK+
Sbjct: 3  DQSNNMIIEEVNKGLNPGTIVLLVVATLLILFFVGNYALYMYAQKTLPPRKKKPVSKKKL 62

Query: 76 KRERLKQGVSAPGE 90
          KRE+LKQGVSAPGE
Sbjct: 63 KREKLKQGVSAPGE 76

[Close]

BLAST of CSPI06G24230 vs. Swiss-Prot
Match: S1FA2_ORYSJ (DNA-binding protein S1FA2 OS=Oryza sativa subsp. japonica GN=S1FA2 PE=3 SV=2)

HSP 1 Score: 101.7 bits (252), Expect = 4.4e-21
Identity = 51/70 (72.86%), Postives = 59/70 (84.29%), Query Frame = 1


Query: 20 NVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRER 79
          NV+ +   +G NPG+IVL+VV   L  F VGNYALY+YAQKTLPP+KKKPVSKKKMKRE+
Sbjct: 11 NVVIEEVNKGLNPGMIVLIVVATFLLLFFVGNYALYVYAQKTLPPRKKKPVSKKKMKREK 70

Query: 80 LKQGVSAPGE 90
          LKQGVSAPGE
Sbjct: 71 LKQGVSAPGE 80

[Close]

BLAST of CSPI06G24230 vs. Swiss-Prot
Match: S1FA2_ARATH (DNA-binding protein S1FA2 OS=Arabidopsis thaliana GN=S1FA2 PE=3 SV=2)

HSP 1 Score: 100.9 bits (250), Expect = 7.5e-21
Identity = 48/64 (75.00%), Postives = 56/64 (87.50%), Query Frame = 1


Query: 26 EARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGVS 85
          EA+G NPGLIVLLV+GGLL  FL+ NY +YMYAQK LPP+KKKP+SKKK+KRE+LKQGV 
Sbjct: 13 EAKGLNPGLIVLLVIGGLLVTFLIANYVMYMYAQKNLPPRKKKPLSKKKLKREKLKQGVP 72

Query: 86 APGE 90
           PGE
Sbjct: 73 VPGE 76

[Close]

BLAST of CSPI06G24230 vs. Swiss-Prot
Match: S1FA3_ARATH (DNA-binding protein S1FA3 OS=Arabidopsis thaliana GN=S1FA3 PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.3e-20
Identity = 48/64 (75.00%), Postives = 56/64 (87.50%), Query Frame = 1


Query: 26 EARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGVS 85
          E++G NPGLIVLLV+GGLL  FLVGN+ LY YAQK LPP+KKKPVSKKKMK+E++KQGV 
Sbjct: 10 ESKGLNPGLIVLLVIGGLLLTFLVGNFILYTYAQKNLPPRKKKPVSKKKMKKEKMKQGVQ 69

Query: 86 APGE 90
           PGE
Sbjct: 70 VPGE 73

[Close]

BLAST of CSPI06G24230 vs. TrEMBL
Match: A0A0A0KEM3_CUCSA (DNA-binding protein S1FA OS=Cucumis sativus GN=Csa_6G445000 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 1.2e-41
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1


Query: 1  MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQK 60
          MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQK
Sbjct: 1  MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQK 60

Query: 61 TLPPKKKKPVSKKKMKRERLKQGVSAPGE 90
          TLPPKKKKPVSKKKMKRERLKQGVSAPGE
Sbjct: 61 TLPPKKKKPVSKKKMKRERLKQGVSAPGE 89

[Close]

BLAST of CSPI06G24230 vs. TrEMBL
Match: D7SKV6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g03160 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 5.9e-33
Identity = 72/89 (80.90%), Postives = 82/89 (92.13%), Query Frame = 1


Query: 1  MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQK 60
          ME+DF+F DKVPP+  RMGNVI+D +A+GFNPGLIVLL+V GLL  FLVGNYALY+YAQK
Sbjct: 1  MEEDFEFADKVPPSFERMGNVIKDADAKGFNPGLIVLLLVVGLLLVFLVGNYALYVYAQK 60

Query: 61 TLPPKKKKPVSKKKMKRERLKQGVSAPGE 90
          TLPP+KKKPVSKKKMK+ERLKQGVSAPGE
Sbjct: 61 TLPPRKKKPVSKKKMKKERLKQGVSAPGE 89

[Close]

BLAST of CSPI06G24230 vs. TrEMBL
Match: A0A0B2PK08_GLYSO (DNA-binding protein S1FA2 OS=Glycine soja GN=glysoja_016584 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.3e-32
Identity = 71/89 (79.78%), Postives = 80/89 (89.89%), Query Frame = 1


Query: 1  MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQK 60
          M DDFDF DKVPP+ +R+GNVI+D  ++GFNPGLIVLLVVGGLL  FL+GNY LY YAQK
Sbjct: 1  MADDFDFADKVPPSFDRVGNVIKDSGSKGFNPGLIVLLVVGGLLLTFLIGNYVLYSYAQK 60

Query: 61 TLPPKKKKPVSKKKMKRERLKQGVSAPGE 90
          TLPP+KKKPVSKKKMK+ERLKQGVSAPGE
Sbjct: 61 TLPPRKKKPVSKKKMKKERLKQGVSAPGE 89

[Close]

BLAST of CSPI06G24230 vs. TrEMBL
Match: C6SX22_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_03G179000 PE=2 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.3e-32
Identity = 71/89 (79.78%), Postives = 80/89 (89.89%), Query Frame = 1


Query: 1  MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQK 60
          M DDFDF DKVPP+ +R+GNVI+D  ++GFNPGLIVLLVVGGLL  FL+GNY LY YAQK
Sbjct: 1  MADDFDFADKVPPSFDRVGNVIKDSGSKGFNPGLIVLLVVGGLLLTFLIGNYVLYSYAQK 60

Query: 61 TLPPKKKKPVSKKKMKRERLKQGVSAPGE 90
          TLPP+KKKPVSKKKMK+ERLKQGVSAPGE
Sbjct: 61 TLPPRKKKPVSKKKMKKERLKQGVSAPGE 89

[Close]

BLAST of CSPI06G24230 vs. TrEMBL
Match: V4S3V4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013218mg PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 1.7e-32
Identity = 69/89 (77.53%), Postives = 81/89 (91.01%), Query Frame = 1


Query: 1  MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQK 60
          M+++F+FGDK PP+ +R+GN ++D  A+GFNPGLIVLLVVGGLL  FL+GNY LYMYAQK
Sbjct: 1  MDEEFEFGDKAPPSFDRVGNTVKDAGAKGFNPGLIVLLVVGGLLLVFLIGNYILYMYAQK 60

Query: 61 TLPPKKKKPVSKKKMKRERLKQGVSAPGE 90
          TLPPKKKKPVSKKKMK+ERLKQGVSAPGE
Sbjct: 61 TLPPKKKKPVSKKKMKKERLKQGVSAPGE 89

[Close]

BLAST of CSPI06G24230 vs. TAIR10
Match: AT2G37120.1 (AT2G37120.1 S1FA-like DNA-binding protein)

HSP 1 Score: 100.9 bits (250), Expect = 4.2e-22
Identity = 48/64 (75.00%), Postives = 56/64 (87.50%), Query Frame = 1


Query: 26 EARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGVS 85
          EA+G NPGLIVLLV+GGLL  FL+ NY +YMYAQK LPP+KKKP+SKKK+KRE+LKQGV 
Sbjct: 13 EAKGLNPGLIVLLVIGGLLVTFLIANYVMYMYAQKNLPPRKKKPLSKKKLKREKLKQGVP 72

Query: 86 APGE 90
           PGE
Sbjct: 73 VPGE 76

[Close]

BLAST of CSPI06G24230 vs. TAIR10
Match: AT3G09735.1 (AT3G09735.1 S1FA-like DNA-binding protein)

HSP 1 Score: 100.1 bits (248), Expect = 7.2e-22
Identity = 48/64 (75.00%), Postives = 56/64 (87.50%), Query Frame = 1


Query: 26 EARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGVS 85
          E++G NPGLIVLLV+GGLL  FLVGN+ LY YAQK LPP+KKKPVSKKKMK+E++KQGV 
Sbjct: 10 ESKGLNPGLIVLLVIGGLLLTFLVGNFILYTYAQKNLPPRKKKPVSKKKMKKEKMKQGVQ 69

Query: 86 APGE 90
           PGE
Sbjct: 70 VPGE 73

[Close]

BLAST of CSPI06G24230 vs. TAIR10
Match: AT3G53370.1 (AT3G53370.1 S1FA-like DNA-binding protein)

HSP 1 Score: 99.4 bits (246), Expect = 1.2e-21
Identity = 49/64 (76.56%), Postives = 55/64 (85.94%), Query Frame = 1


Query: 26 EARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGVS 85
          EA+G NPGLIVLLVVGG L  FL+ NY LY+YAQK LPP+KKKPVSKKK+KRE+LKQGV 
Sbjct: 13 EAKGLNPGLIVLLVVGGPLLVFLIANYVLYVYAQKNLPPRKKKPVSKKKLKREKLKQGVP 72

Query: 86 APGE 90
           PGE
Sbjct: 73 VPGE 76

[Close]

BLAST of CSPI06G24230 vs. NCBI nr
Match: gi|449450978|ref|XP_004143239.1| (PREDICTED: DNA-binding protein S1FA-like [Cucumis sativus])

HSP 1 Score: 176.8 bits (447), Expect = 1.7e-41
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1


Query: 1  MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQK 60
          MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQK
Sbjct: 1  MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQK 60

Query: 61 TLPPKKKKPVSKKKMKRERLKQGVSAPGE 90
          TLPPKKKKPVSKKKMKRERLKQGVSAPGE
Sbjct: 61 TLPPKKKKPVSKKKMKRERLKQGVSAPGE 89

[Close]

BLAST of CSPI06G24230 vs. NCBI nr
Match: gi|659096749|ref|XP_008449267.1| (PREDICTED: DNA-binding protein S1FA-like [Cucumis melo])

HSP 1 Score: 173.7 bits (439), Expect = 1.4e-40
Identity = 88/89 (98.88%), Postives = 88/89 (98.88%), Query Frame = 1


Query: 1  MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQK 60
          MEDDFDFGDKVPPAVNRM NVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQK
Sbjct: 1  MEDDFDFGDKVPPAVNRMRNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQK 60

Query: 61 TLPPKKKKPVSKKKMKRERLKQGVSAPGE 90
          TLPPKKKKPVSKKKMKRERLKQGVSAPGE
Sbjct: 61 TLPPKKKKPVSKKKMKRERLKQGVSAPGE 89

[Close]

BLAST of CSPI06G24230 vs. NCBI nr
Match: gi|225435257|ref|XP_002285012.1| (PREDICTED: DNA-binding protein S1FA [Vitis vinifera])

HSP 1 Score: 147.9 bits (372), Expect = 8.5e-33
Identity = 72/89 (80.90%), Postives = 82/89 (92.13%), Query Frame = 1


Query: 1  MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQK 60
          ME+DF+F DKVPP+  RMGNVI+D +A+GFNPGLIVLL+V GLL  FLVGNYALY+YAQK
Sbjct: 1  MEEDFEFADKVPPSFERMGNVIKDADAKGFNPGLIVLLLVVGLLLVFLVGNYALYVYAQK 60

Query: 61 TLPPKKKKPVSKKKMKRERLKQGVSAPGE 90
          TLPP+KKKPVSKKKMK+ERLKQGVSAPGE
Sbjct: 61 TLPPRKKKPVSKKKMKKERLKQGVSAPGE 89

[Close]

BLAST of CSPI06G24230 vs. NCBI nr
Match: gi|720027982|ref|XP_010264750.1| (PREDICTED: DNA-binding protein S1FA [Nelumbo nucifera])

HSP 1 Score: 146.7 bits (369), Expect = 1.9e-32
Identity = 72/89 (80.90%), Postives = 80/89 (89.89%), Query Frame = 1


Query: 1  MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQK 60
          M DDF+F DKVPP+  R+GNVI+D EA+GFNPGLIVLLVV  LL  FLVGNYALYMYAQK
Sbjct: 1  MADDFEFSDKVPPSFERVGNVIKDAEAKGFNPGLIVLLVVVSLLLVFLVGNYALYMYAQK 60

Query: 61 TLPPKKKKPVSKKKMKRERLKQGVSAPGE 90
          TLPP+KKKP+SKKKMK+ERLKQGVSAPGE
Sbjct: 61 TLPPRKKKPISKKKMKKERLKQGVSAPGE 89

[Close]

BLAST of CSPI06G24230 vs. NCBI nr
Match: gi|356505202|ref|XP_003521381.1| (PREDICTED: DNA-binding protein S1FA [Glycine max])

HSP 1 Score: 146.7 bits (369), Expect = 1.9e-32
Identity = 71/89 (79.78%), Postives = 80/89 (89.89%), Query Frame = 1


Query: 1  MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQK 60
          M DDFDF DKVPP+ +R+GNVI+D  ++GFNPGLIVLLVVGGLL  FL+GNY LY YAQK
Sbjct: 1  MADDFDFADKVPPSFDRVGNVIKDSGSKGFNPGLIVLLVVGGLLLTFLIGNYVLYSYAQK 60

Query: 61 TLPPKKKKPVSKKKMKRERLKQGVSAPGE 90
          TLPP+KKKPVSKKKMK+ERLKQGVSAPGE
Sbjct: 61 TLPPRKKKPVSKKKMKKERLKQGVSAPGE 89

The following BLAST results are available for this feature:

BLAST of CSPI06G24230 vs. Swiss-Prot


Match Name	E-value	Identity	Description
S1FA_SPIOL	2.3e-22	76.47	DNA-binding protein S1FA OS=Spinacia oleracea GN=S1FA PE=3 SV=1	[more]
S1FA1_ORYSJ	2.0e-21	71.62	DNA-binding protein S1FA1 OS=Oryza sativa subsp. japonica GN=S1FA1 PE=3 SV=1	[more]
S1FA2_ORYSJ	4.4e-21	72.86	DNA-binding protein S1FA2 OS=Oryza sativa subsp. japonica GN=S1FA2 PE=3 SV=2	[more]
S1FA2_ARATH	7.5e-21	75.00	DNA-binding protein S1FA2 OS=Arabidopsis thaliana GN=S1FA2 PE=3 SV=2	[more]
S1FA3_ARATH	1.3e-20	75.00	DNA-binding protein S1FA3 OS=Arabidopsis thaliana GN=S1FA3 PE=3 SV=1	[more]

BLAST of CSPI06G24230 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KEM3_CUCSA	1.2e-41	100.00	DNA-binding protein S1FA OS=Cucumis sativus GN=Csa_6G445000 PE=4 SV=1	[more]
D7SKV6_VITVI	5.9e-33	80.90	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g03160 PE=4 SV=...	[more]
A0A0B2PK08_GLYSO	1.3e-32	79.78	DNA-binding protein S1FA2 OS=Glycine soja GN=glysoja_016584 PE=4 SV=1	[more]
C6SX22_SOYBN	1.3e-32	79.78	Uncharacterized protein OS=Glycine max GN=GLYMA_03G179000 PE=2 SV=1	[more]
V4S3V4_9ROSI	1.7e-32	77.53	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013218mg PE=4 SV=1	[more]

BLAST of CSPI06G24230 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G37120.1	4.2e-22	75.00	S1FA-like DNA-binding protein	[more]
AT3G09735.1	7.2e-22	75.00	S1FA-like DNA-binding protein	[more]
AT3G53370.1	1.2e-21	76.56	S1FA-like DNA-binding protein	[more]

BLAST of CSPI06G24230 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449450978\|ref\|XP_004143239.1\|	1.7e-41	100.00	PREDICTED: DNA-binding protein S1FA-like [Cucumis sativus]	[more]
gi\|659096749\|ref\|XP_008449267.1\|	1.4e-40	98.88	PREDICTED: DNA-binding protein S1FA-like [Cucumis melo]	[more]
gi\|225435257\|ref\|XP_002285012.1\|	8.5e-33	80.90	PREDICTED: DNA-binding protein S1FA [Vitis vinifera]	[more]
gi\|720027982\|ref\|XP_010264750.1\|	1.9e-32	80.90	PREDICTED: DNA-binding protein S1FA [Nelumbo nucifera]	[more]
gi\|356505202\|ref\|XP_003521381.1\|	1.9e-32	79.78	PREDICTED: DNA-binding protein S1FA [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006779	S1FA_DNA-bd

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G24230.1	CSPI06G24230.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006779	DNA binding protein S1FA	PFAM	PF04689	S1FA	coord: 26..89 score: 1.5
None	No IPR available	PANTHER	PTHR35298	FAMILY NOT NAMED	coord: 1..89 score: 6.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI06G24230	Csa6G445000	Cucumber (Chinese Long) v2	cpicuB313
CSPI06G24230	MELO3C014253	Melon (DHL92) v3.5.1	cpimeB492
CSPI06G24230	CsaV3_6G039400	Cucumber (Chinese Long) v3	cpicucB363
CSPI06G24230	CsaV3_3G035680	Cucumber (Chinese Long) v3	cpicucB334
CSPI06G24230	Bhi03G001300	Wax gourd	cpiwgoB630
CSPI06G24230	Bhi11G001795	Wax gourd	cpiwgoB532
CSPI06G24230	Cucsa.124240	Cucumber (Gy14) v1	cgycpiB168
CSPI06G24230	CmaCh07G009350	Cucurbita maxima (Rimu)	cmacpiB894
CSPI06G24230	CmaCh03G012490	Cucurbita maxima (Rimu)	cmacpiB689
CSPI06G24230	CmoCh07G009790	Cucurbita moschata (Rifu)	cmocpiB874
CSPI06G24230	CmoCh03G012470	Cucurbita moschata (Rifu)	cmocpiB681
CSPI06G24230	Cp4.1LG19g04200	Cucurbita pepo (Zucchini)	cpecpiB503
CSPI06G24230	CsGy6G023630	Cucumber (Gy14) v2	cgybcpiB287
CSPI06G24230	Carg00992	Silver-seed gourd	carcpiB0187
CSPI06G24230	Carg15280	Silver-seed gourd	carcpiB0585

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI06G24230	Melon (DHL92) v3.6.1	cpimedB479
CSPI06G24230	Melon (DHL92) v3.6.1	cpimedB473
CSPI06G24230	Cucumber (Gy14) v2	cgybcpiB140
CSPI06G24230	Silver-seed gourd	carcpiB0282
CSPI06G24230	Silver-seed gourd	carcpiB0455
CSPI06G24230	Watermelon (97103) v2	cpiwmbB442
CSPI06G24230	Watermelon (97103) v2	cpiwmbB479
CSPI06G24230	Wild cucumber (PI 183967)	cpicpiB124
CSPI06G24230	Cucumber (Gy14) v1	cgycpiB462
CSPI06G24230	Cucurbita maxima (Rimu)	cmacpiB271
CSPI06G24230	Cucurbita maxima (Rimu)	cmacpiB857
CSPI06G24230	Cucurbita moschata (Rifu)	cmocpiB259
CSPI06G24230	Cucurbita moschata (Rifu)	cmocpiB838
CSPI06G24230	Cucumber (Chinese Long) v2	cpicuB282
CSPI06G24230	Melon (DHL92) v3.5.1	cpimeB487
CSPI06G24230	Watermelon (Charleston Gray)	cpiwcgB444
CSPI06G24230	Watermelon (Charleston Gray)	cpiwcgB488
CSPI06G24230	Watermelon (97103) v1	cpiwmB467
CSPI06G24230	Watermelon (97103) v1	cpiwmB524
CSPI06G24230	Cucurbita pepo (Zucchini)	cpecpiB081
CSPI06G24230	Cucurbita pepo (Zucchini)	cpecpiB627
CSPI06G24230	Cucurbita pepo (Zucchini)	cpecpiB880
CSPI06G24230	Bottle gourd (USVL1VR-Ls)	cpilsiB440
CSPI06G24230	Bottle gourd (USVL1VR-Ls)	cpilsiB452