CsGy6G018880 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy6G018880
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	60S ribosomal protein L5-like
Location	Chr6 : 19501000 .. 19504442 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCAAACACGCGCCTAAACTGTCAACAATGTCAGAACAATCTGAGCCGTTGATCACGTGTCCTTAGGGTTTATACAAATAGCAGATCCTTCCATCAAAGAACTCCTCTGCTTCGGCCGTCTTCGTGTCTCTCATCCTCTCACTCTACTTCAGGTCTCAGCTTCGGAGATGGTGAGTTCTTGCTCAGTTCTTAAATAAATATCCACTAATTTTTCTAGCGTTCATAGAATTTTAGCATTCAGAGAAGATAATGGTAGAGAATTTTCCACATTGTATGCATTTTTTTTTTTTGTTCAATTTCAAGAGGATCTGAACATTGCATTCACTTTACTTCAGGAATACTACTCACATTTAATTGATGTATACTGTTGTGTAATTGAGTTGTTCTCCAATAGCGTTGTTGGGAATGATTGAAGCAGAGTTACTGCACTGTTTCGCTTAATTTTGTTAACGTTGTTCGTTTCAGTATTGATTGTAGTGATCAGAAAGATGTTTATGATATTTTTTGCAGGCTTTCGCGAAGGCTCAAAAGACGAAGGCATACTTTAAACGGTATCAGGTTAAATTCAAGAGAAGGAGAGGTATTTCCGACTTTTTTTTGTTTGTTTATATTCTCATGAATCATATTTGAAAAGTTAATTGTCGGTTTCTGATAATATTCTCTCCTGATAATCCAGAGGGCAAGACTGATTATAGGGCTAGGATTCGCCTCATTAATCAAGACAAGAACAAGTACAACACTCCCAAATACCGCTTTGTTATTAGAATTGTATCCTCACACAGTAAACCGAGCAGTGACAGTGGTTTTTGTTTGATTTTCTAGTGGTTTTTCAACGAACTTGCAATTACTGGTTTCTATCTTTCCTTCAGTTTTCTCACCCTAATTTTTTTTAATGTCTGGGGTCTGTATGCTTATCTCAATGATAGGAATATCTGTGTGGACATACCATTTACTTAGTGTTACGAAAAGGACGTGCATTGTGAATGCTGTGTTCTACTGATTACTCCATTGATTTATGTTTCAAGCTGTGATAGGTAGCCTTGTGATATTCTATGGCAATTTGATCCAACAAATTTATTAATATTGAATCAATAATTCCTTTTATGGTTCGTTAAGATTCCTGCAAGTCATTTTTCTGTTAACTATCTTTGAAGACAATTGATGTCCCATTACCATCTATCATTACCTTTTATGAGCAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGAATGGTGAGCTCTATTTATGTTCACTTGAGAAATGGGAACCTTAACGTTCATATGTAGACTAACAAGGACATTACAGCACAAATAGTGTCTTCTAGCATTGCTGGTGACATGATTCTTGCTGCTGCTTATTCTCATGAGCTGCCACGTTATGGTCTTGAAGTTGGTCTGACAAATTATGCTGCAGGTACTATTGCATTGTAAAACTATTGGGGGACTGAGTTTTTTGATATCTAACTTATTTTCCCTATCATCATTTATGTGGAATGGGTGCATGAAACCTGTTTAGCCTACTGTACTGGACTTCTAGTGGCTCGCCGTGTCTTGAAGAAGCTTGAGATGGATGATGAGTACGAGGGTAATCTTGAGGTATTCTATTCATTCCCTCCATCACCTTATAATAAGGCAAAACAGAATGAAATTCACCTCTTCTATTAAACTCTTAACACTGAAAGTGTTTGTATGATTAGGCTACTGGAGAGGATTACTCGGTGGAACCCACAGATAGCCGAAGGCCTTTCAGAGCCCTCCTTGACGTAGGTCTAGTCCGAACAACTACGGGAAATCGTGTTTTTGGTGCCCTCAAGGTATATATTTAGTTAGTCCATTTAAGATGAGCTGTAGGATCTGTTTTCTTTCTGCTACTTACATTATTTTTATCTGGTTTGATGCATGTTGCATGAATGATTTTATCGACTCTTCTTCAAACCATGGCTGGATACAAAAGGATTGAATTATCTTGTCAAACCAATTATATATTTATATGGCATGTATGCGTGGGTGTTTGCATGCGCTCATATTTCTGTATTTTGTTTTTTCGAACAGCTATTCAACATTTGAGATTTGAAGTCCGTTATAATTTATCTGCTTATCATAGTGTTACTATTATGAGAAGTTTTCAAGCTCATTTCCTGCTTGGAATGTAATTTCAAAATTGAAAGATTACAAATTCACAACTGTGATAGTTTATCCAATATTTGTCCATGTTCTTTGTAATTTTAGTGGCTCTTGGTATCTTTCTCAAACCTGAATCCATTGTTATTTCTTTTGAGACTGAAGCTATGAATTTTACGTAACACAGGGAGCTTTGGATGGTGGATTGGATGTTCCACACAGTGTTAAGAGGTTTGCTGGCTTTTCAAAGGGTAACAATGAGCTCAATGCTGATGTTCATCGAAAATACATTTTTGGAGGTCACGTTGCTGCCTATATGCGGGTAAACATTCGTGAATTTAATATTCGAGCATGGAAATTAGAGTAGTTATTAGTATATTCAGTCATGTTCACTTTCATGAGTTGTATTACTCAGACCTTGATGGAGGATGAACCAGAGAAGTATCAAACTCAATTCAGTGATTACATCAAGAAAGGAATTGAGCCTGACAACATTGAGGAGTTGTTGAAAAAAGTTCATTCTGCAATCCGTGCAGAACCATTGGTAAAGACGACTGAGAAGCAACCACCAAAGACACACAAGAGGTAAATGTCAAAACTTGTTAGTTTTTCACAATTGAACTAGCTTTTTAATTTCTGATTTTGCATCCTTATGCCGTTTTTCTCATAGGTATAACTTGAAGAAGCTCACATACGAACAAAGGAAGGCCAAGTTGGTCGAGCGCTTGAATGCATTGAATTCTGCTGCTGGAGTTGACGACGATGAAGATGACGATGAGTGATTGAACTAGCCTTGCCTGGAATCACAACACAAACTGTATTTCAACCAATTCTATCACTACCAACCATTTAGCTTATGTGAGAAGAATATCCACATGTTTTTTTCAGTCTCCCCTAGGCGATTTTGCAGCGTTTTATTAATCAAAATTTCTAGTGTTTTCTTGATTTTTGATGGCTATAGTTTTAGTTTCCGAAATTCAAAATTGAGATTAGATGTATGAAAAGTTTAACTCACTCGTTGGTTTATTTATGCCAATTGCATCTTATGTTTTCATATATTTTGGCTGTTCGTTGAATAGAGCTTTGTGATGGCCTTGTCAACCTAATCTTCTTAAAATTTAGGGAAATTATTTATTTATTTCTTTTGGTATTTTTAGATTTGCAGATCAATGATCCTATAATTTCATTTATGTCTCTAAATTTGATATAAAGTATAGGTTGGTTTTGATTTTTATTCTTTCCATTTTGATTCACTTAATAGAGTTTAACAATGGGGTCATGGTGTGGTGACTTCCCTTTGGGTTT

mRNA sequence

TCAAACACGCGCCTAAACTGTCAACAATGTCAGAACAATCTGAGCCGTTGATCACGTGTCCTTAGGGTTTATACAAATAGCAGATCCTTCCATCAAAGAACTCCTCTGCTTCGGCCGTCTTCGTGTCTCTCATCCTCTCACTCTACTTCAGGTCTCAGCTTCGGAGATGGCTTTCGCGAAGGCTCAAAAGACGAAGGCATACTTTAAACGGTATCAGGTTAAATTCAAGAGAAGGAGAGAGGGCAAGACTGATTATAGGGCTAGGATTCGCCTCATTAATCAAGACAAGAACAAGTACAACACTCCCAAATACCGCTTTGTTATTAGAATTACTAACAAGGACATTACAGCACAAATAGTGTCTTCTAGCATTGCTGGTGACATGATTCTTGCTGCTGCTTATTCTCATGAGCTGCCACGTTATGGTCTTGAAGTTGGTCTGACAAATTATGCTGCAGCCTACTGTACTGGACTTCTAGTGGCTCGCCGTGTCTTGAAGAAGCTTGAGATGGATGATGAGTACGAGGGTAATCTTGAGGCTACTGGAGAGGATTACTCGGTGGAACCCACAGATAGCCGAAGGCCTTTCAGAGCCCTCCTTGACGTAGGTCTAGTCCGAACAACTACGGGAAATCGTGTTTTTGGTGCCCTCAAGGGAGCTTTGGATGGTGGATTGGATGTTCCACACAGTGTTAAGAGGTTTGCTGGCTTTTCAAAGGGTAACAATGAGCTCAATGCTGATGTTCATCGAAAATACATTTTTGGAGGTCACGTTGCTGCCTATATGCGGACCTTGATGGAGGATGAACCAGAGAAGTATCAAACTCAATTCAGTGATTACATCAAGAAAGGAATTGAGCCTGACAACATTGAGGAGTTGTTGAAAAAAGTTCATTCTGCAATCCGTGCAGAACCATTGGTAAAGACGACTGAGAAGCAACCACCAAAGACACACAAGAGGTATAACTTGAAGAAGCTCACATACGAACAAAGGAAGGCCAAGTTGGTCGAGCGCTTGAATGCATTGAATTCTGCTGCTGGAGTTGACGACGATGAAGATGACGATGAGTGATTGAACTAGCCTTGCCTGGAATCACAACACAAACTGTATTTCAACCAATTCTATCACTACCAACCATTTAGCTTATGTGAGAAGAATATCCACATGTTTTTTTCAGTCTCCCCTAGGCGATTTTGCAGCGTTTTATTAATCAAAATTTCTAGTGTTTTCTTGATTTTTGATGGCTATAGTTTTAGTTTCCGAAATTCAAAATTGAGATTAGATGTATGAAAAGTTTAACTCACTCGTTGGTTTATTTATGCCAATTGCATCTTATGTTTTCATATATTTTGGCTGTTCGTTGAATAGAGCTTTGTGATGGCCTTGTCAACCTAATCTTCTTAAAATTTAGGGAAATTATTTATTTATTTCTTTTGGTATTTTTAGATTTGCAGATCAATGATCCTATAATTTCATTTATGTCTCTAAATTTGATATAAAGTATAGGTTGGTTTTGATTTTTATTCTTTCCATTTTGATTCACTTAATAGAGTTTAACAATGGGGTCATGGTGTGGTGACTTCCCTTTGGGTTT

Coding sequence (CDS)

ATGGCTTTCGCGAAGGCTCAAAAGACGAAGGCATACTTTAAACGGTATCAGGTTAAATTCAAGAGAAGGAGAGAGGGCAAGACTGATTATAGGGCTAGGATTCGCCTCATTAATCAAGACAAGAACAAGTACAACACTCCCAAATACCGCTTTGTTATTAGAATTACTAACAAGGACATTACAGCACAAATAGTGTCTTCTAGCATTGCTGGTGACATGATTCTTGCTGCTGCTTATTCTCATGAGCTGCCACGTTATGGTCTTGAAGTTGGTCTGACAAATTATGCTGCAGCCTACTGTACTGGACTTCTAGTGGCTCGCCGTGTCTTGAAGAAGCTTGAGATGGATGATGAGTACGAGGGTAATCTTGAGGCTACTGGAGAGGATTACTCGGTGGAACCCACAGATAGCCGAAGGCCTTTCAGAGCCCTCCTTGACGTAGGTCTAGTCCGAACAACTACGGGAAATCGTGTTTTTGGTGCCCTCAAGGGAGCTTTGGATGGTGGATTGGATGTTCCACACAGTGTTAAGAGGTTTGCTGGCTTTTCAAAGGGTAACAATGAGCTCAATGCTGATGTTCATCGAAAATACATTTTTGGAGGTCACGTTGCTGCCTATATGCGGACCTTGATGGAGGATGAACCAGAGAAGTATCAAACTCAATTCAGTGATTACATCAAGAAAGGAATTGAGCCTGACAACATTGAGGAGTTGTTGAAAAAAGTTCATTCTGCAATCCGTGCAGAACCATTGGTAAAGACGACTGAGAAGCAACCACCAAAGACACACAAGAGGTATAACTTGAAGAAGCTCACATACGAACAAAGGAAGGCCAAGTTGGTCGAGCGCTTGAATGCATTGAATTCTGCTGCTGGAGTTGACGACGATGAAGATGACGATGAGTGA

Protein sequence

MAFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVIRITNKDITAQIVSSSIAGDMILAAAYSHELPRYGLEVGLTNYAAAYCTGLLVARRVLKKLEMDDEYEGNLEATGEDYSVEPTDSRRPFRALLDVGLVRTTTGNRVFGALKGALDGGLDVPHSVKRFAGFSKGNNELNADVHRKYIFGGHVAAYMRTLMEDEPEKYQTQFSDYIKKGIEPDNIEELLKKVHSAIRAEPLVKTTEKQPPKTHKRYNLKKLTYEQRKAKLVERLNALNSAAGVDDDEDDDE

Homology

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BLAST of CsGy6G018880 vs. NCBI nr
Match: XP_004144191.1 (PREDICTED: 60S ribosomal protein L5-like [Cucumis sativus] >KGN47624.1 hypothetical protein Csa_6G365730 [Cucumis sativus])

HSP 1 Score: 586.3 bits (1510), Expect = 6.1e-164
Identity = 301/301 (100.00%), Postives = 301/301 (100.00%), Query Frame = 0


Query: 1   MAFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVIRITNKDI 60
           MAFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVIRITNKDI
Sbjct: 1   MAFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVIRITNKDI 60

Query: 61  TAQIVSSSIAGDMILAAAYSHELPRYGLEVGLTNYAAAYCTGLLVARRVLKKLEMDDEYE 120
           TAQIVSSSIAGDMILAAAYSHELPRYGLEVGLTNYAAAYCTGLLVARRVLKKLEMDDEYE
Sbjct: 61  TAQIVSSSIAGDMILAAAYSHELPRYGLEVGLTNYAAAYCTGLLVARRVLKKLEMDDEYE 120

Query: 121 GNLEATGEDYSVEPTDSRRPFRALLDVGLVRTTTGNRVFGALKGALDGGLDVPHSVKRFA 180
           GNLEATGEDYSVEPTDSRRPFRALLDVGLVRTTTGNRVFGALKGALDGGLDVPHSVKRFA
Sbjct: 121 GNLEATGEDYSVEPTDSRRPFRALLDVGLVRTTTGNRVFGALKGALDGGLDVPHSVKRFA 180

Query: 181 GFSKGNNELNADVHRKYIFGGHVAAYMRTLMEDEPEKYQTQFSDYIKKGIEPDNIEELLK 240
           GFSKGNNELNADVHRKYIFGGHVAAYMRTLMEDEPEKYQTQFSDYIKKGIEPDNIEELLK
Sbjct: 181 GFSKGNNELNADVHRKYIFGGHVAAYMRTLMEDEPEKYQTQFSDYIKKGIEPDNIEELLK 240

Query: 241 KVHSAIRAEPLVKTTEKQPPKTHKRYNLKKLTYEQRKAKLVERLNALNSAAGVDDDEDDD 300
           KVHSAIRAEPLVKTTEKQPPKTHKRYNLKKLTYEQRKAKLVERLNALNSAAGVDDDEDDD
Sbjct: 241 KVHSAIRAEPLVKTTEKQPPKTHKRYNLKKLTYEQRKAKLVERLNALNSAAGVDDDEDDD 300

Query: 301 E 302
           E
Sbjct: 301 E 301

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BLAST of CsGy6G018880 vs. NCBI nr
Match: XP_008445491.1 (PREDICTED: 60S ribosomal protein L5-like [Cucumis melo])

HSP 1 Score: 562.4 bits (1448), Expect = 9.4e-157
Identity = 288/301 (95.68%), Postives = 292/301 (97.01%), Query Frame = 0


Query: 1   MAFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVIRITNKDI 60
           MAFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVIR TNKDI
Sbjct: 1   MAFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVIRFTNKDI 60

Query: 61  TAQIVSSSIAGDMILAAAYSHELPRYGLEVGLTNYAAAYCTGLLVARRVLKKLEMDDEYE 120
           TAQIVSSSIAGDM+LA+AYSHELP YGLEVGLTNYAAAYCTGLL+ARRVLKKLEMDDEYE
Sbjct: 61  TAQIVSSSIAGDMVLASAYSHELPHYGLEVGLTNYAAAYCTGLLLARRVLKKLEMDDEYE 120

Query: 121 GNLEATGEDYSVEPTDSRRPFRALLDVGLVRTTTGNRVFGALKGALDGGLDVPHSVKRFA 180
           GNLEATGEDYSVEPTDSRRPFRALLDVGLVRTTTGNRVFGALKGALDGGLDVPHSVKRFA
Sbjct: 121 GNLEATGEDYSVEPTDSRRPFRALLDVGLVRTTTGNRVFGALKGALDGGLDVPHSVKRFA 180

Query: 181 GFSKGNNELNADVHRKYIFGGHVAAYMRTLMEDEPEKYQTQFSDYIKKGIEPDNIEELLK 240
           GFSKGNNELNADVHRKYIFGGHVAAYMRTLMEDEPEKYQTQFSDYIKKGIEPDNIEELLK
Sbjct: 181 GFSKGNNELNADVHRKYIFGGHVAAYMRTLMEDEPEKYQTQFSDYIKKGIEPDNIEELLK 240

Query: 241 KVHSAIRAEPLVKTTEKQPPKTHKRYNLKKLTYEQRKAKLVERLNALNSAAGVDDDEDDD 300
           KVHSAIRAEPL KTTEKQPPKTHKRYNLKKLTYEQRKAKLVERLNALNSAAG D     +
Sbjct: 241 KVHSAIRAEPLAKTTEKQPPKTHKRYNLKKLTYEQRKAKLVERLNALNSAAGADXXXXXE 300

Query: 301 E 302
           E
Sbjct: 301 E 301

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BLAST of CsGy6G018880 vs. NCBI nr
Match: XP_022131844.1 (60S ribosomal protein L5-like [Momordica charantia])

HSP 1 Score: 541.6 bits (1394), Expect = 1.7e-150
Identity = 274/301 (91.03%), Postives = 289/301 (96.01%), Query Frame = 0


Query: 1   MAFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVIRITNKDI 60
           MAFAKAQKTKAYFKRYQVK+KRRR+GKTDYRARIRLINQDKNKYNTPKYRFVIR TNKDI
Sbjct: 1   MAFAKAQKTKAYFKRYQVKYKRRRDGKTDYRARIRLINQDKNKYNTPKYRFVIRFTNKDI 60

Query: 61  TAQIVSSSIAGDMILAAAYSHELPRYGLEVGLTNYAAAYCTGLLVARRVLKKLEMDDEYE 120
           TAQIVSSSIAGDM+LAAAYSHELP YGLEVGLTNYAAAYCTGLL+ARRVLK LEMD EYE
Sbjct: 61  TAQIVSSSIAGDMVLAAAYSHELPHYGLEVGLTNYAAAYCTGLLLARRVLKSLEMDKEYE 120

Query: 121 GNLEATGEDYSVEPTDSRRPFRALLDVGLVRTTTGNRVFGALKGALDGGLDVPHSVKRFA 180
           GNLE TGED+SVEPTD+RRPFRALLDVGLVRTTTGNRVFGALKGALDGGLDVPHSVKRFA
Sbjct: 121 GNLEVTGEDFSVEPTDNRRPFRALLDVGLVRTTTGNRVFGALKGALDGGLDVPHSVKRFA 180

Query: 181 GFSKGNNELNADVHRKYIFGGHVAAYMRTLMEDEPEKYQTQFSDYIKKGIEPDNIEELLK 240
           GFSK N EL+A+VHRKYIFGGHVAAYMR+LMEDEPEKYQ+ FSDYIKKGIEPDNIEELLK
Sbjct: 181 GFSKDNKELDAEVHRKYIFGGHVAAYMRSLMEDEPEKYQSHFSDYIKKGIEPDNIEELLK 240

Query: 241 KVHSAIRAEPLVKTTEKQPPKTHKRYNLKKLTYEQRKAKLVERLNALNSAAGVDDDEDDD 300
           KVH+AIR+EPLVK TEKQPPK HKR+NLKKLTYE+RKAKLVERLNALNSAAG DDD+ DD
Sbjct: 241 KVHAAIRSEPLVKKTEKQPPKEHKRFNLKKLTYEERKAKLVERLNALNSAAGADDDDXDD 300

Query: 301 E 302
           E
Sbjct: 301 E 301

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BLAST of CsGy6G018880 vs. NCBI nr
Match: XP_022951292.1 (60S ribosomal protein L5-like [Cucurbita moschata])

HSP 1 Score: 530.8 bits (1366), Expect = 3.0e-147
Identity = 270/301 (89.70%), Postives = 286/301 (95.02%), Query Frame = 0


Query: 1   MAFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVIRITNKDI 60
           MAFAKAQKTKAYFKRYQVKF+RRR+GKTDYRARIRLINQDKNKYNTPKYRFVIR +NKDI
Sbjct: 1   MAFAKAQKTKAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVIRFSNKDI 60

Query: 61  TAQIVSSSIAGDMILAAAYSHELPRYGLEVGLTNYAAAYCTGLLVARRVLKKLEMDDEYE 120
           TAQI+SSSIAGDM+LA+AYSHELP YGLEVGLTNYAAAYCTGLL+ARRVLKKLEMDDEYE
Sbjct: 61  TAQILSSSIAGDMVLASAYSHELPHYGLEVGLTNYAAAYCTGLLLARRVLKKLEMDDEYE 120

Query: 121 GNLEATGEDYSVEPTDSRRPFRALLDVGLVRTTTGNRVFGALKGALDGGLDVPHSVKRFA 180
           GNLE TGEDYSVEPTDSRRPFRALLDVGLVRTTTGNRVFGALKGALDGGLDVPHSVKRFA
Sbjct: 121 GNLEVTGEDYSVEPTDSRRPFRALLDVGLVRTTTGNRVFGALKGALDGGLDVPHSVKRFA 180

Query: 181 GFSKGNNELNADVHRKYIFGGHVAAYMRTLMEDEPEKYQTQFSDYIKKGIEPDNIEELLK 240
           GFSK + EL+A+VHRKYIFGGHVAAYMRTLMEDEPEKYQ+QFS+YIKKGI+ DNIEELLK
Sbjct: 181 GFSKDSKELDAEVHRKYIFGGHVAAYMRTLMEDEPEKYQSQFSEYIKKGIDADNIEELLK 240

Query: 241 KVHSAIRAEPLVKTTEKQPPKTHKRYNLKKLTYEQRKAKLVERLNALNSAAGVDDDEDDD 300
           KVHSAIR+EPLVK  EKQPPK HKRYNLKKLTYE+RKAKLVERLNALNSAAG D     +
Sbjct: 241 KVHSAIRSEPLVKKVEKQPPKKHKRYNLKKLTYEERKAKLVERLNALNSAAGADXXXXXE 300

Query: 301 E 302
           E
Sbjct: 301 E 301

[Close]

BLAST of CsGy6G018880 vs. NCBI nr
Match: XP_022961788.1 (60S ribosomal protein L5-like [Cucurbita moschata])

HSP 1 Score: 526.6 bits (1355), Expect = 5.7e-146
Identity = 265/289 (91.70%), Postives = 279/289 (96.54%), Query Frame = 0


Query: 1   MAFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVIRITNKDI 60
           MAFAKAQKTKAYFKRYQVK+KRRREGKTDYRARIRLINQDKNKYNTPKYRFVIR TNKDI
Sbjct: 1   MAFAKAQKTKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVIRFTNKDI 60

Query: 61  TAQIVSSSIAGDMILAAAYSHELPRYGLEVGLTNYAAAYCTGLLVARRVLKKLEMDDEYE 120
           TAQ+VSSSIAGDM+LAAAYSHELP YGL+VGLTNYAAAYCTGLL+ARRVLKKLEMDDEY 
Sbjct: 61  TAQVVSSSIAGDMVLAAAYSHELPHYGLDVGLTNYAAAYCTGLLLARRVLKKLEMDDEYV 120

Query: 121 GNLEATGEDYSVEPTDSRRPFRALLDVGLVRTTTGNRVFGALKGALDGGLDVPHSVKRFA 180
           GNLE +GED+SVEPTDSRRPFRALLDVGLVRTTTGNRVFGALKGALDGGLDVPHSVKRFA
Sbjct: 121 GNLEVSGEDFSVEPTDSRRPFRALLDVGLVRTTTGNRVFGALKGALDGGLDVPHSVKRFA 180

Query: 181 GFSKGNNELNADVHRKYIFGGHVAAYMRTLMEDEPEKYQTQFSDYIKKGIEPDNIEELLK 240
           GFSK + EL+ADVHRKYIFGGHVAAYMR+LMEDEPEKYQ+QFSDYIKKGIEPDNIEELLK
Sbjct: 181 GFSKDSKELDADVHRKYIFGGHVAAYMRSLMEDEPEKYQSQFSDYIKKGIEPDNIEELLK 240

Query: 241 KVHSAIRAEPLVKTTEKQPPKTHKRYNLKKLTYEQRKAKLVERLNALNS 290
           KVHSAIR EPL KTT KQPPK HKRYNLKKLTY++R+AKLVERLNALNS
Sbjct: 241 KVHSAIRTEPLAKTTVKQPPKGHKRYNLKKLTYDERRAKLVERLNALNS 289

[Close]

BLAST of CsGy6G018880 vs. TAIR10
Match: AT5G39740.1 (ribosomal protein L5 B)

HSP 1 Score: 460.3 bits (1183), Expect = 9.1e-130
Identity = 227/288 (78.82%), Postives = 258/288 (89.58%), Query Frame = 0


Query: 1   MAFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVIRITNKDI 60
           M F K+ K+ AYFKRYQVKF+RRR+GKTDYRARIRLINQDKNKYNTPKYRFV+R TNKDI
Sbjct: 1   MVFVKSSKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60

Query: 61  TAQIVSSSIAGDMILAAAYSHELPRYGLEVGLTNYAAAYCTGLLVARRVLKKLEMDDEYE 120
            AQIVS+SIAGD++ A+AY+HELP+YGL VGLTNYAAAYCTGLL+ARRVLK LEMDDEYE
Sbjct: 61  VAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYE 120

Query: 121 GNLEATGEDYSVEPTDSRRPFRALLDVGLVRTTTGNRVFGALKGALDGGLDVPHSVKRFA 180
           GN+EATGED+SVEPTDSRRPFRALLDVGL+RTTTGNRVFGALKGALDGGLD+PHS KRFA
Sbjct: 121 GNVEATGEDFSVEPTDSRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFA 180

Query: 181 GFSKGNNELNADVHRKYIFGGHVAAYMRTLMEDEPEKYQTQFSDYIKKGIEPDNIEELLK 240
           GF K N +L+A++HR YI+GGHV+ YM+ L EDEPEK QT FS YIKKG+E ++IEE+ K
Sbjct: 181 GFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVEAESIEEMYK 240

Query: 241 KVHSAIRAEPLVKTTEKQPPKTHKRYNLKKLTYEQRKAKLVERLNALN 289
           KVH+AIRAEP  K TEK  PK HKRYNLKKLTYE+RK KL+ER+ ALN
Sbjct: 241 KVHAAIRAEPNHKKTEKSAPKEHKRYNLKKLTYEERKNKLIERVKALN 288

[Close]

BLAST of CsGy6G018880 vs. TAIR10
Match: AT3G25520.1 (ribosomal protein L5)

HSP 1 Score: 456.8 bits (1174), Expect = 1.0e-128
Identity = 226/288 (78.47%), Postives = 257/288 (89.24%), Query Frame = 0


Query: 1   MAFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVIRITNKDI 60
           M F K+ K+ AYFKRYQVKF+RRR+GKTDYRARIRLINQDKNKYNTPKYRFV+R TNKDI
Sbjct: 1   MVFVKSTKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60

Query: 61  TAQIVSSSIAGDMILAAAYSHELPRYGLEVGLTNYAAAYCTGLLVARRVLKKLEMDDEYE 120
            AQIVS+SIAGD++ A+AY+HELP+YGL VGLTNYAAAYCTGLL+ARRVLK LEMDDEYE
Sbjct: 61  VAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYE 120

Query: 121 GNLEATGEDYSVEPTDSRRPFRALLDVGLVRTTTGNRVFGALKGALDGGLDVPHSVKRFA 180
           GN+EATGED+SVEPTDSRRPFRALLDVGL+RTTTGNRVFGALKGALDGGLD+PHS KRFA
Sbjct: 121 GNVEATGEDFSVEPTDSRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFA 180

Query: 181 GFSKGNNELNADVHRKYIFGGHVAAYMRTLMEDEPEKYQTQFSDYIKKGIEPDNIEELLK 240
           GF K N +L+A++HR YI+GGHV+ YM+ L EDEPEK QT FS YIKKG+E ++IEEL K
Sbjct: 181 GFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVEAESIEELYK 240

Query: 241 KVHSAIRAEPLVKTTEKQPPKTHKRYNLKKLTYEQRKAKLVERLNALN 289
           KVH+AIRA+P  K T K  PK HKRYNLKKLTYE+RK KL+ER+ ALN
Sbjct: 241 KVHAAIRADPNPKKTVKPAPKQHKRYNLKKLTYEERKNKLIERVKALN 288

[Close]

BLAST of CsGy6G018880 vs. Swiss-Prot
Match: sp|Q6UNT2|RL5_CUCSA (60S ribosomal protein L5 OS=Cucumis sativus OX=3659 GN=RPL5 PE=2 SV=1)

HSP 1 Score: 483.4 bits (1243), Expect = 1.8e-135
Identity = 238/286 (83.22%), Postives = 266/286 (93.01%), Query Frame = 0


Query: 1   MAFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVIRITNKDI 60
           MAFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFV+R +NKDI
Sbjct: 1   MAFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRTSNKDI 60

Query: 61  TAQIVSSSIAGDMILAAAYSHELPRYGLEVGLTNYAAAYCTGLLVARRVLKKLEMDDEYE 120
           TAQI+S+SIAGD++LA+AYSHELP+YGLEVGLTNYAAAYCTGLL+ARRVLK LEMD EYE
Sbjct: 61  TAQIISASIAGDLVLASAYSHELPQYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYE 120

Query: 121 GNLEATGEDYSVEPTDSRRPFRALLDVGLVRTTTGNRVFGALKGALDGGLDVPHSVKRFA 180
           GN+EATGEDYSVEP D+RRPFRALLDVGL+RTTTGNRVFGALKGALDGGLD+PHS KRFA
Sbjct: 121 GNVEATGEDYSVEPADTRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFA 180

Query: 181 GFSKGNNELNADVHRKYIFGGHVAAYMRTLMEDEPEKYQTQFSDYIKKGIEPDNIEELLK 240
           G++K   +L+ +VHRKYIFGGHVAAYMRTLMEDEPEKYQ+ FS+YIKKGIE D +E L K
Sbjct: 181 GYAKNGQQLDVEVHRKYIFGGHVAAYMRTLMEDEPEKYQSHFSEYIKKGIEADELEGLYK 240

Query: 241 KVHSAIRAEPLVKTTEKQPPKTHKRYNLKKLTYEQRKAKLVERLNA 287
           KVH+AIRA P+ K ++K  PK HKRYNLKKLTY++RKA+LVERLNA
Sbjct: 241 KVHAAIRANPIAKKSDKPQPKAHKRYNLKKLTYDERKARLVERLNA 286

[Close]

BLAST of CsGy6G018880 vs. Swiss-Prot
Match: sp|P49227|RL52_ARATH (60S ribosomal protein L5-2 OS=Arabidopsis thaliana OX=3702 GN=RPL5B PE=2 SV=3)

HSP 1 Score: 460.3 bits (1183), Expect = 1.6e-128
Identity = 227/288 (78.82%), Postives = 258/288 (89.58%), Query Frame = 0


Query: 1   MAFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVIRITNKDI 60
           M F K+ K+ AYFKRYQVKF+RRR+GKTDYRARIRLINQDKNKYNTPKYRFV+R TNKDI
Sbjct: 1   MVFVKSSKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60

Query: 61  TAQIVSSSIAGDMILAAAYSHELPRYGLEVGLTNYAAAYCTGLLVARRVLKKLEMDDEYE 120
            AQIVS+SIAGD++ A+AY+HELP+YGL VGLTNYAAAYCTGLL+ARRVLK LEMDDEYE
Sbjct: 61  VAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYE 120

Query: 121 GNLEATGEDYSVEPTDSRRPFRALLDVGLVRTTTGNRVFGALKGALDGGLDVPHSVKRFA 180
           GN+EATGED+SVEPTDSRRPFRALLDVGL+RTTTGNRVFGALKGALDGGLD+PHS KRFA
Sbjct: 121 GNVEATGEDFSVEPTDSRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFA 180

Query: 181 GFSKGNNELNADVHRKYIFGGHVAAYMRTLMEDEPEKYQTQFSDYIKKGIEPDNIEELLK 240
           GF K N +L+A++HR YI+GGHV+ YM+ L EDEPEK QT FS YIKKG+E ++IEE+ K
Sbjct: 181 GFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVEAESIEEMYK 240

Query: 241 KVHSAIRAEPLVKTTEKQPPKTHKRYNLKKLTYEQRKAKLVERLNALN 289
           KVH+AIRAEP  K TEK  PK HKRYNLKKLTYE+RK KL+ER+ ALN
Sbjct: 241 KVHAAIRAEPNHKKTEKSAPKEHKRYNLKKLTYEERKNKLIERVKALN 288

[Close]

BLAST of CsGy6G018880 vs. Swiss-Prot
Match: sp|Q8LBI1|RL51_ARATH (60S ribosomal protein L5-1 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=1 SV=2)

HSP 1 Score: 456.8 bits (1174), Expect = 1.8e-127
Identity = 226/288 (78.47%), Postives = 257/288 (89.24%), Query Frame = 0


Query: 1   MAFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVIRITNKDI 60
           M F K+ K+ AYFKRYQVKF+RRR+GKTDYRARIRLINQDKNKYNTPKYRFV+R TNKDI
Sbjct: 1   MVFVKSTKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60

Query: 61  TAQIVSSSIAGDMILAAAYSHELPRYGLEVGLTNYAAAYCTGLLVARRVLKKLEMDDEYE 120
            AQIVS+SIAGD++ A+AY+HELP+YGL VGLTNYAAAYCTGLL+ARRVLK LEMDDEYE
Sbjct: 61  VAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYE 120

Query: 121 GNLEATGEDYSVEPTDSRRPFRALLDVGLVRTTTGNRVFGALKGALDGGLDVPHSVKRFA 180
           GN+EATGED+SVEPTDSRRPFRALLDVGL+RTTTGNRVFGALKGALDGGLD+PHS KRFA
Sbjct: 121 GNVEATGEDFSVEPTDSRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFA 180

Query: 181 GFSKGNNELNADVHRKYIFGGHVAAYMRTLMEDEPEKYQTQFSDYIKKGIEPDNIEELLK 240
           GF K N +L+A++HR YI+GGHV+ YM+ L EDEPEK QT FS YIKKG+E ++IEEL K
Sbjct: 181 GFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVEAESIEELYK 240

Query: 241 KVHSAIRAEPLVKTTEKQPPKTHKRYNLKKLTYEQRKAKLVERLNALN 289
           KVH+AIRA+P  K T K  PK HKRYNLKKLTYE+RK KL+ER+ ALN
Sbjct: 241 KVHAAIRADPNPKKTVKPAPKQHKRYNLKKLTYEERKNKLIERVKALN 288

[Close]

BLAST of CsGy6G018880 vs. Swiss-Prot
Match: sp|A2WXX3|RL51_ORYSI (60S ribosomal protein L5-1 OS=Oryza sativa subsp. indica OX=39946 GN=RPL5A PE=3 SV=2)

HSP 1 Score: 454.1 bits (1167), Expect = 1.2e-126
Identity = 222/287 (77.35%), Postives = 254/287 (88.50%), Query Frame = 0


Query: 3   FAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVIRITNKDITA 62
           F K QKT AY+KR+QVKFKRRR+GKTDYRARIRL NQDKNKYNTPKYRFV+R TNKDITA
Sbjct: 4   FVKTQKTNAYYKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFVVRFTNKDITA 63

Query: 63  QIVSSSIAGDMILAAAYSHELPRYGLEVGLTNYAAAYCTGLLVARRVLKKLEMDDEYEGN 122
           QIV ++IAGD+++AAAYSHELPRYGLEVGLTNYAAAYCTGLL+ARRVLK   +D EYEGN
Sbjct: 64  QIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEGN 123

Query: 123 LEATGEDYSVEPTDSRRPFRALLDVGLVRTTTGNRVFGALKGALDGGLDVPHSVKRFAGF 182
           +EATGEDY VEP D RRPFRALLDVGL+RTTTGNRVFGALKGALDGGLD+PHS KRFAGF
Sbjct: 124 IEATGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGF 183

Query: 183 SKGNNELNADVHRKYIFGGHVAAYMRTLMEDEPEKYQTQFSDYIKKGIEPDNIEELLKKV 242
            K   +L++D+HRKYI+GGHVA YMR++ E+EPEK+Q  FS+Y+KKGI+ D +E L KKV
Sbjct: 184 KKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMEALYKKV 243

Query: 243 HSAIRAEPLVKTTEKQPPKTHKRYNLKKLTYEQRKAKLVERLNALNS 290
           H+AIRA+P +  + K+ P THKRYNLKKLTYEQRKA LVERLNALNS
Sbjct: 244 HAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALNS 290

[Close]

BLAST of CsGy6G018880 vs. Swiss-Prot
Match: sp|Q0JGY1|RL51_ORYSJ (60S ribosomal protein L5-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL5A PE=2 SV=1)

HSP 1 Score: 452.6 bits (1163), Expect = 3.4e-126
Identity = 222/287 (77.35%), Postives = 253/287 (88.15%), Query Frame = 0


Query: 3   FAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVIRITNKDITA 62
           F K QKT AY KR+QVKFKRRR+GKTDYRARIRL NQDKNKYNTPKYRFV+R TNKDITA
Sbjct: 4   FVKTQKTNAYHKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFVVRFTNKDITA 63

Query: 63  QIVSSSIAGDMILAAAYSHELPRYGLEVGLTNYAAAYCTGLLVARRVLKKLEMDDEYEGN 122
           QIV ++IAGD+++AAAYSHELPRYGLEVGLTNYAAAYCTGLL+ARRVLK   +D EYEGN
Sbjct: 64  QIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEGN 123

Query: 123 LEATGEDYSVEPTDSRRPFRALLDVGLVRTTTGNRVFGALKGALDGGLDVPHSVKRFAGF 182
           +EATGEDY VEP D RRPFRALLDVGL+RTTTGNRVFGALKGALDGGLD+PHS KRFAGF
Sbjct: 124 IEATGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGF 183

Query: 183 SKGNNELNADVHRKYIFGGHVAAYMRTLMEDEPEKYQTQFSDYIKKGIEPDNIEELLKKV 242
            K   +L++D+HRKYI+GGHVA YMR++ E+EPEK+Q  FS+Y+KKGI+ D +E L KKV
Sbjct: 184 KKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMEALYKKV 243

Query: 243 HSAIRAEPLVKTTEKQPPKTHKRYNLKKLTYEQRKAKLVERLNALNS 290
           H+AIRA+P +  + K+ P THKRYNLKKLTYEQRKA LVERLNALNS
Sbjct: 244 HAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALNS 290

[Close]

BLAST of CsGy6G018880 vs. TrEMBL
Match: tr|A0A0A0KFL3|A0A0A0KFL3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G365730 PE=3 SV=1)

HSP 1 Score: 586.3 bits (1510), Expect = 4.0e-164
Identity = 301/301 (100.00%), Postives = 301/301 (100.00%), Query Frame = 0


Query: 1   MAFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVIRITNKDI 60
           MAFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVIRITNKDI
Sbjct: 1   MAFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVIRITNKDI 60

Query: 61  TAQIVSSSIAGDMILAAAYSHELPRYGLEVGLTNYAAAYCTGLLVARRVLKKLEMDDEYE 120
           TAQIVSSSIAGDMILAAAYSHELPRYGLEVGLTNYAAAYCTGLLVARRVLKKLEMDDEYE
Sbjct: 61  TAQIVSSSIAGDMILAAAYSHELPRYGLEVGLTNYAAAYCTGLLVARRVLKKLEMDDEYE 120

Query: 121 GNLEATGEDYSVEPTDSRRPFRALLDVGLVRTTTGNRVFGALKGALDGGLDVPHSVKRFA 180
           GNLEATGEDYSVEPTDSRRPFRALLDVGLVRTTTGNRVFGALKGALDGGLDVPHSVKRFA
Sbjct: 121 GNLEATGEDYSVEPTDSRRPFRALLDVGLVRTTTGNRVFGALKGALDGGLDVPHSVKRFA 180

Query: 181 GFSKGNNELNADVHRKYIFGGHVAAYMRTLMEDEPEKYQTQFSDYIKKGIEPDNIEELLK 240
           GFSKGNNELNADVHRKYIFGGHVAAYMRTLMEDEPEKYQTQFSDYIKKGIEPDNIEELLK
Sbjct: 181 GFSKGNNELNADVHRKYIFGGHVAAYMRTLMEDEPEKYQTQFSDYIKKGIEPDNIEELLK 240

Query: 241 KVHSAIRAEPLVKTTEKQPPKTHKRYNLKKLTYEQRKAKLVERLNALNSAAGVDDDEDDD 300
           KVHSAIRAEPLVKTTEKQPPKTHKRYNLKKLTYEQRKAKLVERLNALNSAAGVDDDEDDD
Sbjct: 241 KVHSAIRAEPLVKTTEKQPPKTHKRYNLKKLTYEQRKAKLVERLNALNSAAGVDDDEDDD 300

Query: 301 E 302
           E
Sbjct: 301 E 301

[Close]

BLAST of CsGy6G018880 vs. TrEMBL
Match: tr|A0A1S3BCD6|A0A1S3BCD6_CUCME (60S ribosomal protein L5-like OS=Cucumis melo OX=3656 GN=LOC103488491 PE=3 SV=1)

HSP 1 Score: 562.4 bits (1448), Expect = 6.2e-157
Identity = 288/301 (95.68%), Postives = 292/301 (97.01%), Query Frame = 0


Query: 1   MAFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVIRITNKDI 60
           MAFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVIR TNKDI
Sbjct: 1   MAFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVIRFTNKDI 60

Query: 61  TAQIVSSSIAGDMILAAAYSHELPRYGLEVGLTNYAAAYCTGLLVARRVLKKLEMDDEYE 120
           TAQIVSSSIAGDM+LA+AYSHELP YGLEVGLTNYAAAYCTGLL+ARRVLKKLEMDDEYE
Sbjct: 61  TAQIVSSSIAGDMVLASAYSHELPHYGLEVGLTNYAAAYCTGLLLARRVLKKLEMDDEYE 120

Query: 121 GNLEATGEDYSVEPTDSRRPFRALLDVGLVRTTTGNRVFGALKGALDGGLDVPHSVKRFA 180
           GNLEATGEDYSVEPTDSRRPFRALLDVGLVRTTTGNRVFGALKGALDGGLDVPHSVKRFA
Sbjct: 121 GNLEATGEDYSVEPTDSRRPFRALLDVGLVRTTTGNRVFGALKGALDGGLDVPHSVKRFA 180

Query: 181 GFSKGNNELNADVHRKYIFGGHVAAYMRTLMEDEPEKYQTQFSDYIKKGIEPDNIEELLK 240
           GFSKGNNELNADVHRKYIFGGHVAAYMRTLMEDEPEKYQTQFSDYIKKGIEPDNIEELLK
Sbjct: 181 GFSKGNNELNADVHRKYIFGGHVAAYMRTLMEDEPEKYQTQFSDYIKKGIEPDNIEELLK 240

Query: 241 KVHSAIRAEPLVKTTEKQPPKTHKRYNLKKLTYEQRKAKLVERLNALNSAAGVDDDEDDD 300
           KVHSAIRAEPL KTTEKQPPKTHKRYNLKKLTYEQRKAKLVERLNALNSAAG D     +
Sbjct: 241 KVHSAIRAEPLAKTTEKQPPKTHKRYNLKKLTYEQRKAKLVERLNALNSAAGADXXXXXE 300

Query: 301 E 302
           E
Sbjct: 301 E 301

[Close]

BLAST of CsGy6G018880 vs. TrEMBL
Match: tr|A0A1S3V164|A0A1S3V164_VIGRR (60S ribosomal protein L5 OS=Vigna radiata var. radiata OX=3916 GN=LOC106770768 PE=3 SV=1)

HSP 1 Score: 508.4 bits (1308), Expect = 1.1e-140
Identity = 250/300 (83.33%), Postives = 280/300 (93.33%), Query Frame = 0


Query: 1   MAFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVIRITNKDI 60
           MAF KAQK++AYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFV+R TNKD+
Sbjct: 1   MAFVKAQKSRAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDV 60

Query: 61  TAQIVSSSIAGDMILAAAYSHELPRYGLEVGLTNYAAAYCTGLLVARRVLKKLEMDDEYE 120
            AQI S+SIAGD++LAAAY+HELPRYGLEVGLTNYAAAYCTGLL+ARRVLKKLEMD+EYE
Sbjct: 61  IAQITSASIAGDIVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKKLEMDEEYE 120

Query: 121 GNLEATGEDYSVEPTDSRRPFRALLDVGLVRTTTGNRVFGALKGALDGGLDVPHSVKRFA 180
           GN+EATGEDYSVEP D+RRPFRALLDVGL+RTTTGNRVFGALKGALDGGLD+PHS KRFA
Sbjct: 121 GNVEATGEDYSVEPADTRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFA 180

Query: 181 GFSKGNNELNADVHRKYIFGGHVAAYMRTLMEDEPEKYQTQFSDYIKKGIEPDNIEELLK 240
           GF K   EL+ADVHRKY+FGGHVA+YM++L+EDEPEKYQT FS+YIK+GIEPD +EEL K
Sbjct: 181 GFDKDKKELDADVHRKYVFGGHVASYMKSLIEDEPEKYQTHFSEYIKRGIEPDGLEELYK 240

Query: 241 KVHSAIRAEPLVKTTEKQPPKTHKRYNLKKLTYEQRKAKLVERLNALNSAAGVDDDEDDD 300
           KVH+AIRA+P  K +EK+PPK HKRYNLKKLTYE+RKAKLV RL ALNSAA VD+DEDD+
Sbjct: 241 KVHAAIRADPTFKKSEKEPPKEHKRYNLKKLTYEERKAKLVARLQALNSAADVDEDEDDE 300

[Close]

BLAST of CsGy6G018880 vs. TrEMBL
Match: tr|A0A0L9TY45|A0A0L9TY45_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan02g159500 PE=3 SV=1)

HSP 1 Score: 505.4 bits (1300), Expect = 9.0e-140
Identity = 249/299 (83.28%), Postives = 279/299 (93.31%), Query Frame = 0


Query: 1   MAFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVIRITNKDI 60
           MAF KAQK++AYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFV+R TNKDI
Sbjct: 1   MAFVKAQKSRAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60

Query: 61  TAQIVSSSIAGDMILAAAYSHELPRYGLEVGLTNYAAAYCTGLLVARRVLKKLEMDDEYE 120
            AQI S+SIAGD++LAAAYSHELPRYGLEVGLTNYAAAYCTGLL+ARRVLKKLEMD++YE
Sbjct: 61  IAQITSASIAGDIVLAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKKLEMDEDYE 120

Query: 121 GNLEATGEDYSVEPTDSRRPFRALLDVGLVRTTTGNRVFGALKGALDGGLDVPHSVKRFA 180
           GN+EA+GEDYSVEP D+RRPFRALLDVGL+RTTTGNRVFGALKGALDGGLD+PHS KRFA
Sbjct: 121 GNVEASGEDYSVEPADTRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFA 180

Query: 181 GFSKGNNELNADVHRKYIFGGHVAAYMRTLMEDEPEKYQTQFSDYIKKGIEPDNIEELLK 240
           GF K   EL+ADVHRKY+FGGHVA+YM++L+EDEPEKYQT FS+YIK+GIEPD IEEL K
Sbjct: 181 GFDKDKKELDADVHRKYVFGGHVASYMKSLIEDEPEKYQTHFSEYIKRGIEPDGIEELYK 240

Query: 241 KVHSAIRAEPLVKTTEKQPPKTHKRYNLKKLTYEQRKAKLVERLNALNSAAGVDDDEDD 300
            VH+AIRA+P VK +EK+PPK HKRYNLKKLTYE+RKAKLV RL ALNSAA VD+D+D+
Sbjct: 241 NVHAAIRADPTVKKSEKEPPKEHKRYNLKKLTYEERKAKLVARLQALNSAADVDEDDDE 299

[Close]

BLAST of CsGy6G018880 vs. TrEMBL
Match: tr|A0A0S3SQL1|A0A0S3SQL1_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.08G181100 PE=3 SV=1)

HSP 1 Score: 505.4 bits (1300), Expect = 9.0e-140
Identity = 249/299 (83.28%), Postives = 279/299 (93.31%), Query Frame = 0


Query: 1   MAFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVIRITNKDI 60
           MAF KAQK++AYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFV+R TNKDI
Sbjct: 1   MAFVKAQKSRAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60

Query: 61  TAQIVSSSIAGDMILAAAYSHELPRYGLEVGLTNYAAAYCTGLLVARRVLKKLEMDDEYE 120
            AQI S+SIAGD++LAAAYSHELPRYGLEVGLTNYAAAYCTGLL+ARRVLKKLEMD++YE
Sbjct: 61  IAQITSASIAGDIVLAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKKLEMDEDYE 120

Query: 121 GNLEATGEDYSVEPTDSRRPFRALLDVGLVRTTTGNRVFGALKGALDGGLDVPHSVKRFA 180
           GN+EA+GEDYSVEP D+RRPFRALLDVGL+RTTTGNRVFGALKGALDGGLD+PHS KRFA
Sbjct: 121 GNVEASGEDYSVEPADTRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFA 180

Query: 181 GFSKGNNELNADVHRKYIFGGHVAAYMRTLMEDEPEKYQTQFSDYIKKGIEPDNIEELLK 240
           GF K   EL+ADVHRKY+FGGHVA+YM++L+EDEPEKYQT FS+YIK+GIEPD IEEL K
Sbjct: 181 GFDKDKKELDADVHRKYVFGGHVASYMKSLIEDEPEKYQTHFSEYIKRGIEPDGIEELYK 240

Query: 241 KVHSAIRAEPLVKTTEKQPPKTHKRYNLKKLTYEQRKAKLVERLNALNSAAGVDDDEDD 300
            VH+AIRA+P VK +EK+PPK HKRYNLKKLTYE+RKAKLV RL ALNSAA VD+D+D+
Sbjct: 241 NVHAAIRADPTVKKSEKEPPKEHKRYNLKKLTYEERKAKLVARLQALNSAADVDEDDDE 299

The following BLAST results are available for this feature:

BLAST of CsGy6G018880 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004144191.1	6.1e-164	100.00	PREDICTED: 60S ribosomal protein L5-like [Cucumis sativus] >KGN47624.1 hypotheti...	[more]
XP_008445491.1	9.4e-157	95.68	PREDICTED: 60S ribosomal protein L5-like [Cucumis melo]	[more]
XP_022131844.1	1.7e-150	91.03	60S ribosomal protein L5-like [Momordica charantia]	[more]
XP_022951292.1	3.0e-147	89.70	60S ribosomal protein L5-like [Cucurbita moschata]	[more]
XP_022961788.1	5.7e-146	91.70	60S ribosomal protein L5-like [Cucurbita moschata]	[more]

BLAST of CsGy6G018880 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G39740.1	9.1e-130	78.82	ribosomal protein L5 B	[more]
AT3G25520.1	1.0e-128	78.47	ribosomal protein L5	[more]

BLAST of CsGy6G018880 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q6UNT2\|RL5_CUCSA	1.8e-135	83.22	60S ribosomal protein L5 OS=Cucumis sativus OX=3659 GN=RPL5 PE=2 SV=1	[more]
sp\|P49227\|RL52_ARATH	1.6e-128	78.82	60S ribosomal protein L5-2 OS=Arabidopsis thaliana OX=3702 GN=RPL5B PE=2 SV=3	[more]
sp\|Q8LBI1\|RL51_ARATH	1.8e-127	78.47	60S ribosomal protein L5-1 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=1 SV=2	[more]
sp\|A2WXX3\|RL51_ORYSI	1.2e-126	77.35	60S ribosomal protein L5-1 OS=Oryza sativa subsp. indica OX=39946 GN=RPL5A PE=3 ...	[more]
sp\|Q0JGY1\|RL51_ORYSJ	3.4e-126	77.35	60S ribosomal protein L5-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL5A PE=...	[more]

BLAST of CsGy6G018880 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KFL3\|A0A0A0KFL3_CUCSA	4.0e-164	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G365730 PE=3 SV=1	[more]
tr\|A0A1S3BCD6\|A0A1S3BCD6_CUCME	6.2e-157	95.68	60S ribosomal protein L5-like OS=Cucumis melo OX=3656 GN=LOC103488491 PE=3 SV=1	[more]
tr\|A0A1S3V164\|A0A1S3V164_VIGRR	1.1e-140	83.33	60S ribosomal protein L5 OS=Vigna radiata var. radiata OX=3916 GN=LOC106770768 P...	[more]
tr\|A0A0L9TY45\|A0A0L9TY45_PHAAN	9.0e-140	83.28	Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan02g159500 PE...	[more]
tr\|A0A0S3SQL1\|A0A0S3SQL1_PHAAN	9.0e-140	83.28	Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.08G...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0008097	5S rRNA binding
GO:0003735	structural constituent of ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR025607	Rbsml_L5e/L18P_C
IPR005485	Rbsml_L5_euk/L18_arc

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000027	ribosomal large subunit assembly
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
molecular_function	GO:0008097	5S rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G018880.1	CsGy6G018880.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005485	Ribosomal protein L5 eukaryotic/L18 archaeal	PRINTS	PR00058	RIBOSOMALL5	coord: 20..39 score: 76.25 coord: 84..104 score: 83.33 coord: 206..226 score: 52.38 coord: 164..183 score: 66.88 coord: 43..62 score: 66.56 coord: 144..163 score: 77.19
IPR005485	Ribosomal protein L5 eukaryotic/L18 archaeal	PFAM	PF17144	Ribosomal_L5e	coord: 14..175 e-value: 1.9E-83 score: 278.2
IPR005485	Ribosomal protein L5 eukaryotic/L18 archaeal	PANTHER	PTHR23410	RIBOSOMAL PROTEIN L5-RELATED	coord: 1..299
IPR005485	Ribosomal protein L5 eukaryotic/L18 archaeal	HAMAP	MF_01337_A	Ribosomal_L18_A	coord: 14..246 score: 22.264
None	No IPR available	GENE3D	G3DSA:3.30.420.550		coord: 1..291 e-value: 3.0E-138 score: 462.2
None	No IPR available	PANTHER	PTHR23410:SF18	60S RIBOSOMAL PROTEIN L5-1-RELATED	coord: 1..299
None	No IPR available	CDD	cd00432	Ribosomal_L18_L5e	coord: 41..170 e-value: 1.28655E-26 score: 100.307
None	No IPR available	SUPERFAMILY	SSF53137	Translational machinery components	coord: 139..251 coord: 11..112
IPR025607	Ribosomal protein L5 eukaryotic/L18 archaeal, C-terminal	PFAM	PF14204	Ribosomal_L18_c	coord: 191..280 e-value: 4.6E-35 score: 120.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy6G018880	Cla022000	Watermelon (97103) v1	cgybwmB427
CsGy6G018880	Csa6G365730	Cucumber (Chinese Long) v2	cgybcuB281
CsGy6G018880	MELO3C011448	Melon (DHL92) v3.5.1	cgybmeB406
CsGy6G018880	ClCG08G010160	Watermelon (Charleston Gray)	cgybwcgB454
CsGy6G018880	CSPI06G19410	Wild cucumber (PI 183967)	cgybcpiB287
CsGy6G018880	CmaCh12G000860	Cucurbita maxima (Rimu)	cgybcmaB714
CsGy6G018880	CmaCh05G004300	Cucurbita maxima (Rimu)	cgybcmaB844
CsGy6G018880	CmoCh12G000670	Cucurbita moschata (Rifu)	cgybcmoB698
CsGy6G018880	CmoCh05G004520	Cucurbita moschata (Rifu)	cgybcmoB825
CsGy6G018880	Lsi08G008750	Bottle gourd (USVL1VR-Ls)	cgyblsiB437
CsGy6G018880	Cp4.1LG07g00780	Cucurbita pepo (Zucchini)	cgybcpeB875
CsGy6G018880	Cp4.1LG11g03780	Cucurbita pepo (Zucchini)	cgybcpeB714
CsGy6G018880	MELO3C011448.2	Melon (DHL92) v3.6.1	cgybmedB405
CsGy6G018880	CsaV3_6G032340	Cucumber (Chinese Long) v3	cgybcucB298
CsGy6G018880	Cla97C08G153000	Watermelon (97103) v2	cgybwmbB463
CsGy6G018880	Bhi04G001150	Wax gourd	cgybwgoB559
CsGy6G018880	Carg26696	Silver-seed gourd	carcgybB0009
CsGy6G018880	Carg09286	Silver-seed gourd	carcgybB0156

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy6G018880	Cucumber (Chinese Long) v3	cgybcucB250
CsGy6G018880	Cucumber (Gy14) v2	cgybcgybB037