CsGy6G018590 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy6G018590
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr6 : 19331033 .. 19331227 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAGTAGGGTTGAGGAAGATCAAGAAACTGCCACCATAGCAGCTGAAAATCAAACCTCATCAGAGAAGACCTTGCAGAAGGCAGACATAGAGCTTCTGATGGTAATCATAACATTCATCGGAACCATTTCTTTCCAAGCTGGTACAAACCCTCCTGGTGGCGTTTGGCAAGAAGGGTCGGTATATACTTGA

mRNA sequence

ATGGCAAGTAGGGTTGAGGAAGATCAAGAAACTGCCACCATAGCAGCTGAAAATCAAACCTCATCAGAGAAGACCTTGCAGAAGGCAGACATAGAGCTTCTGATGGTAATCATAACATTCATCGGAACCATTTCTTTCCAAGCTGGTACAAACCCTCCTGGTGGCGTTTGGCAAGAAGGGTCGGTATATACTTGA

Coding sequence (CDS)

ATGGCAAGTAGGGTTGAGGAAGATCAAGAAACTGCCACCATAGCAGCTGAAAATCAAACCTCATCAGAGAAGACCTTGCAGAAGGCAGACATAGAGCTTCTGATGGTAATCATAACATTCATCGGAACCATTTCTTTCCAAGCTGGTACAAACCCTCCTGGTGGCGTTTGGCAAGAAGGGTCGGTATATACTTGA

Protein sequence

MASRVEEDQETATIAAENQTSSEKTLQKADIELLMVIITFIGTISFQAGTNPPGGVWQEGSVYT

Homology

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BLAST of CsGy6G018590 vs. NCBI nr
Match: XP_004144205.1 (PREDICTED: uncharacterized protein LOC101208645 [Cucumis sativus] >KGN47594.1 hypothetical protein Csa_6G363010 [Cucumis sativus])

HSP 1 Score: 116.3 bits (290), Expect = 3.8e-23
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1  MASRVEEDQETATIAAENQTSSEKTLQKADIELLMVIITFIGTISFQAGTNPPGGVWQEG 60
          MASRVEEDQETATIAAENQTSSEKTLQKADIELLMVIITFIGTISFQAGTNPPGGVWQEG
Sbjct: 1  MASRVEEDQETATIAAENQTSSEKTLQKADIELLMVIITFIGTISFQAGTNPPGGVWQEG 60

[Close]

BLAST of CsGy6G018590 vs. NCBI nr
Match: XP_016900016.1 (PREDICTED: uncharacterized protein LOC103488514 [Cucumis melo])

HSP 1 Score: 101.3 bits (251), Expect = 1.3e-18
Identity = 54/61 (88.52%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 1  MASRVEEDQETATIAAENQTSSEKTLQKADIELLMVIITFIGTISFQAGTNPPGGVWQEG 60
          MASRV ED+ET TIAAENQTSSEK+ QK DIELLMVIITFIGTISFQAGTNPPGGVWQ+G
Sbjct: 1  MASRVGEDEET-TIAAENQTSSEKSWQKTDIELLMVIITFIGTISFQAGTNPPGGVWQDG 60

Query: 61 S 62
          S
Sbjct: 61 S 60

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BLAST of CsGy6G018590 vs. NCBI nr
Match: XP_022973456.1 (uncharacterized protein LOC111471995 [Cucurbita maxima])

HSP 1 Score: 60.5 bits (145), Expect = 2.5e-06
Identity = 28/59 (47.46%), Postives = 40/59 (67.80%), Query Frame = 0


Query: 1  MASRVEEDQETATIAAENQTSSEKTLQKADIELLMVIITFIGTISFQAGTNPPGGVWQE 60
          MASR+EE+            + E+T QK D E L+V++TF+ T++FQAG +PPGGVWQ+
Sbjct: 1  MASRLEEEAPNQIGNGREDQNKEETWQKRDREYLLVVVTFMATVAFQAGVSPPGGVWQQ 59

[Close]

BLAST of CsGy6G018590 vs. NCBI nr
Match: XP_023523646.1 (uncharacterized protein LOC111787821 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 60.5 bits (145), Expect = 2.5e-06
Identity = 28/59 (47.46%), Postives = 40/59 (67.80%), Query Frame = 0


Query: 1  MASRVEEDQETATIAAENQTSSEKTLQKADIELLMVIITFIGTISFQAGTNPPGGVWQE 60
          MASR+EE+            + E+T QK D E L+V++TF+ T++FQAG +PPGGVWQ+
Sbjct: 1  MASRLEEEAPNQIGNGREDQNKEETWQKRDREYLLVVVTFMATVAFQAGVSPPGGVWQQ 59

[Close]

BLAST of CsGy6G018590 vs. NCBI nr
Match: XP_023523647.1 (uncharacterized protein LOC111787821 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 60.5 bits (145), Expect = 2.5e-06
Identity = 28/59 (47.46%), Postives = 40/59 (67.80%), Query Frame = 0


Query: 1  MASRVEEDQETATIAAENQTSSEKTLQKADIELLMVIITFIGTISFQAGTNPPGGVWQE 60
          MASR+EE+            + E+T QK D E L+V++TF+ T++FQAG +PPGGVWQ+
Sbjct: 1  MASRLEEEAPNQIGNGREDQNKEETWQKRDREYLLVVVTFMATVAFQAGVSPPGGVWQQ 59

[Close]

BLAST of CsGy6G018590 vs. TrEMBL
Match: tr|A0A0A0KFJ5|A0A0A0KFJ5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G363010 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 2.5e-23
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1  MASRVEEDQETATIAAENQTSSEKTLQKADIELLMVIITFIGTISFQAGTNPPGGVWQEG 60
          MASRVEEDQETATIAAENQTSSEKTLQKADIELLMVIITFIGTISFQAGTNPPGGVWQEG
Sbjct: 1  MASRVEEDQETATIAAENQTSSEKTLQKADIELLMVIITFIGTISFQAGTNPPGGVWQEG 60

[Close]

BLAST of CsGy6G018590 vs. TrEMBL
Match: tr|A0A1S4DVK4|A0A1S4DVK4_CUCME (uncharacterized protein LOC103488514 OS=Cucumis melo OX=3656 GN=LOC103488514 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 8.3e-19
Identity = 54/61 (88.52%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 1  MASRVEEDQETATIAAENQTSSEKTLQKADIELLMVIITFIGTISFQAGTNPPGGVWQEG 60
          MASRV ED+ET TIAAENQTSSEK+ QK DIELLMVIITFIGTISFQAGTNPPGGVWQ+G
Sbjct: 1  MASRVGEDEET-TIAAENQTSSEKSWQKTDIELLMVIITFIGTISFQAGTNPPGGVWQDG 60

Query: 61 S 62
          S
Sbjct: 61 S 60

[Close]

BLAST of CsGy6G018590 vs. TrEMBL
Match: tr|A0A1S3BD33|A0A1S3BD33_CUCME (uncharacterized protein LOC103488576 OS=Cucumis melo OX=3656 GN=LOC103488576 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.6e-04
Identity = 24/49 (48.98%), Postives = 32/49 (65.31%), Query Frame = 0


Query: 11 TATIAAENQTSSEKTLQKADIELLMVIITFIGTISFQAGTNPPGGVWQE 60
          T T   +N+  +     + D + LMV+ TFI T++FQ GTNPPGGVWQE
Sbjct: 18 TETGHEKNKMMNNNNWIREDTDFLMVVTTFIATVAFQIGTNPPGGVWQE 66

[Close]

BLAST of CsGy6G018590 vs. TrEMBL
Match: tr|A0A0A0KGU1|A0A0A0KGU1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G363530 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 4.4e-04
Identity = 26/54 (48.15%), Postives = 32/54 (59.26%), Query Frame = 0


Query: 13 TIAAENQTSSEKT-------LQKADIELLMVIITFIGTISFQAGTNPPGGVWQE 60
          TI   + T  EK          + D + LMV+ TFI T++FQ GTNPPGGVWQE
Sbjct: 15 TIDTTDDTGHEKNKMXXXXXWMREDTDFLMVVTTFIATVAFQIGTNPPGGVWQE 68

[Close]

BLAST of CsGy6G018590 vs. TrEMBL
Match: tr|A0A1S3BCY4|A0A1S3BCY4_CUCME (uncharacterized protein LOC103488512 OS=Cucumis melo OX=3656 GN=LOC103488512 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 5.8e-04
Identity = 22/67 (32.84%), Postives = 40/67 (59.70%), Query Frame = 0


Query: 1  MASRVEEDQETATIAAENQTSSEKT--------LQKADIELLMVIITFIGTISFQAGTNP 60
          M+    +++E   +A + +T + K         ++  D++ +M+++TFI  ++FQ GTNP
Sbjct: 1  MSKAGAKNEEATVVAIDTETENRKDGEEMNSGWMRPGDVDFVMIVVTFIAAVAFQVGTNP 60

The following BLAST results are available for this feature:

BLAST of CsGy6G018590 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004144205.1	3.8e-23	100.00	PREDICTED: uncharacterized protein LOC101208645 [Cucumis sativus] >KGN47594.1 hy...	[more]
XP_016900016.1	1.3e-18	88.52	PREDICTED: uncharacterized protein LOC103488514 [Cucumis melo]	[more]
XP_022973456.1	2.5e-06	47.46	uncharacterized protein LOC111471995 [Cucurbita maxima]	[more]
XP_023523646.1	2.5e-06	47.46	uncharacterized protein LOC111787821 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_023523647.1	2.5e-06	47.46	uncharacterized protein LOC111787821 isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsGy6G018590 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy6G018590 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy6G018590 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KFJ5\|A0A0A0KFJ5_CUCSA	2.5e-23	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G363010 PE=4 SV=1	[more]
tr\|A0A1S4DVK4\|A0A1S4DVK4_CUCME	8.3e-19	88.52	uncharacterized protein LOC103488514 OS=Cucumis melo OX=3656 GN=LOC103488514 PE=...	[more]
tr\|A0A1S3BD33\|A0A1S3BD33_CUCME	2.6e-04	48.98	uncharacterized protein LOC103488576 OS=Cucumis melo OX=3656 GN=LOC103488576 PE=...	[more]
tr\|A0A0A0KGU1\|A0A0A0KGU1_CUCSA	4.4e-04	48.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G363530 PE=4 SV=1	[more]
tr\|A0A1S3BCY4\|A0A1S3BCY4_CUCME	5.8e-04	32.84	uncharacterized protein LOC103488512 OS=Cucumis melo OX=3656 GN=LOC103488512 PE=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR026961	PGG_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G018590.1	CsGy6G018590.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026961	PGG domain	PFAM	PF13962	PGG	coord: 28..60 e-value: 2.2E-7 score: 30.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy6G018590	Cla021979	Watermelon (97103) v1	cgybwmB427
CsGy6G018590	Csa6G363010	Cucumber (Chinese Long) v2	cgybcuB281
CsGy6G018590	MELO3C011478	Melon (DHL92) v3.5.1	cgybmeB406
CsGy6G018590	CSPI06G19150	Wild cucumber (PI 183967)	cgybcpiB287
CsGy6G018590	Lsi08G008440	Bottle gourd (USVL1VR-Ls)	cgyblsiB437
CsGy6G018590	MELO3C011478.2	Melon (DHL92) v3.6.1	cgybmedB405
CsGy6G018590	CsaV3_6G032030	Cucumber (Chinese Long) v3	cgybcucB298
CsGy6G018590	Cla97C08G152730	Watermelon (97103) v2	cgybwmbB463
CsGy6G018590	Bhi04G001176	Wax gourd	cgybwgoB559

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy6G018590	Cucurbita maxima (Rimu)	cgybcmaB718
CsGy6G018590	Cucurbita maxima (Rimu)	cgybcmaB844
CsGy6G018590	Cucurbita moschata (Rifu)	cgybcmoB702
CsGy6G018590	Cucurbita moschata (Rifu)	cgybcmoB825
CsGy6G018590	Cucurbita pepo (Zucchini)	cgybcpeB714
CsGy6G018590	Cucurbita pepo (Zucchini)	cgybcpeB879
CsGy6G018590	Cucumber (Chinese Long) v2	cgybcuB275
CsGy6G018590	Watermelon (Charleston Gray)	cgybwcgB454
CsGy6G018590	Wild cucumber (PI 183967)	cgybcpiB282
CsGy6G018590	Silver-seed gourd	carcgybB0156
CsGy6G018590	Silver-seed gourd	carcgybB0695
CsGy6G018590	Cucumber (Chinese Long) v3	cgybcucB289