MELO3C011478 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C011478
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Ankyrin repeat family protein
Location	chr3 : 23490607 .. 23491532 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAGAAAAAAGAAAAAAGAAAAAAAAAAAAGAGAAAAGAAAAATCATCAGATTGATCAGCCATGGCAAGTAGGGTTGGAGAAGATGAAGAAACTACCATAGCAGCTGAAAATCAAACCTCATCAGAGAAATCATGGCAGAAGACAGATATAGAGCTTCTGATGGTAATCATAACATTCATCGGAACCATTTCTTTCCAAGCCGGAACAAACCCTCCCGGTGGCGTTTGGCAAGACGGGTCTGTATACTTGAAACGACCATAGTTAACATATCATTTTTGACTCCCTATATTCATTATCCTTAAAGTTTTGTTTAATTTTAGTTCTTCATGTTTTCAATAAATCTTACCTTTACTATTTGGAAGCCTTTTTTTTATTGAAGTTGGTTGGATCACAAAATTCTTTTTATATTCAAAATGAGATTCTCAAAATTTATAAACAAAAAATCAAGACATTTCTTTTAAAACGATAATAAGCGACTTAACATAAACGGAAATATGAACTATTTTAAATATTTATTGAAATGAATGGTTTTGACCTGGATGTCTAAGAATATACTAACAAAAAAAAAAAATTTTGTTTTCAAAATATATAGTAAGTCGAACTCAAATATTTACAAATATCACGAAATATTTTCGTCTATTTAAGATAAACTATAGTAACTATTCCGATCAAGATATTTTTAACAATTTAATTAATAAAAAAATAATTTTTAAAAACTAGGACGTTTTAGCACTTAATTATTAAATTTTAAAAACGTTTCCAACATTCAATTTCTCTAACTTCAAAAGGTTACAAAAGCCTTTTCGATAATTAATCATTTGATTTTTTAAAATTAGTTTCAAGAATAATTATAAATTTAATTTTTGAAATATTTAGATTTGGGTCTATTTTAATTCTTCGTAAACAAATTAGATTTTGTTT

mRNA sequence

AAAAAAAGAAAAAAGAAAAAAGAAAAAAAAAAAAGAGAAAAGAAAAATCATCAGATTGATCAGCCATGGCAAGTAGGGTTGGAGAAGATGAAGAAACTACCATAGCAGCTGAAAATCAAACCTCATCAGAGAAATCATGGCAGAAGACAGATATAGAGCTTCTGATGGTAATCATAACATTCATCGGAACCATTTCTTTCCAAGCCGGAACAAACCCTCCCGGTGGCGTTTGGCAAGACGGGTCTGTATACTTGAAACGACCATAGTTAACATATCATTTTTGACTCCCTATATTCATTATCCTTAAAGTTTTGTTTAATTTTAGTTCTTCATGTTTTCAATAAATCTTACCTTTACTATTTGGAAGCCTTTTTTTTATTGAAGTTGGTTGGATCACAAAATTCTTTTTATATTCAAAATGAGATTCTCAAAATTTATAAACAAAAAATCAAGACATTTCTTTTAAAACGATAATAAGCGACTTAACATAAACGGAAATATGAACTATTTTAAATATTTATTGAAATGAATGGTTTTGACCTGGATGTCTAAGAATATACTAACAAAAAAAAAAAATTTTGTTTTCAAAATATATAGTAAGTCGAACTCAAATATTTACAAATATCACGAAATATTTTCGTCTATTTAAGATAAACTATAGTAACTATTCCGATCAAGATATTTTTAACAATTTAATTAATAAAAAAATAATTTTTAAAAACTAGGACGTTTTAGCACTTAATTATTAAATTTTAAAAACGTTTCCAACATTCAATTTCTCTAACTTCAAAAGGTTACAAAAGCCTTTTCGATAATTAATCATTTGATTTTTTAAAATTAGTTTCAAGAATAATTATAAATTTAATTTTTGAAATATTTAGATTTGGGTCTATTTTAATTCTTCGTAAACAAATTAGATTTTGTTT

Coding sequence (CDS)

ATGGCAAGTAGGGTTGGAGAAGATGAAGAAACTACCATAGCAGCTGAAAATCAAACCTCATCAGAGAAATCATGGCAGAAGACAGATATAGAGCTTCTGATGGTAATCATAACATTCATCGGAACCATTTCTTTCCAAGCCGGAACAAACCCTCCCGGTGGCGTTTGGCAAGACGGGTCTGTATACTTGAAACGACCATAG

Protein sequence

MASRVGEDEETTIAAENQTSSEKSWQKTDIELLMVIITFIGTISFQAGTNPPGGVWQDGSVYLKRP*

Homology

[Close]

BLAST of MELO3C011478 vs. TrEMBL
Match: A0A0A0KFJ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G363010 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.2e-19
Identity = 53/60 (88.33%), Postives = 56/60 (93.33%), Query Frame = 1


Query: 1  MASRVGEDEET-TIAAENQTSSEKSWQKTDIELLMVIITFIGTISFQAGTNPPGGVWQDG 60
          MASRV ED+ET TIAAENQTSSEK+ QK DIELLMVIITFIGTISFQAGTNPPGGVWQ+G
Sbjct: 1  MASRVEEDQETATIAAENQTSSEKTLQKADIELLMVIITFIGTISFQAGTNPPGGVWQEG 60

[Close]

BLAST of MELO3C011478 vs. NCBI nr
Match: gi|659089467|ref|XP_008445524.1| (PREDICTED: uncharacterized protein LOC103488514 [Cucumis melo])

HSP 1 Score: 123.2 bits (308), Expect = 1.7e-25
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1


Query: 1  MASRVGEDEETTIAAENQTSSEKSWQKTDIELLMVIITFIGTISFQAGTNPPGGVWQDGS 60
          MASRVGEDEETTIAAENQTSSEKSWQKTDIELLMVIITFIGTISFQAGTNPPGGVWQDGS
Sbjct: 1  MASRVGEDEETTIAAENQTSSEKSWQKTDIELLMVIITFIGTISFQAGTNPPGGVWQDGS 60

[Close]

BLAST of MELO3C011478 vs. NCBI nr
Match: gi|449452917|ref|XP_004144205.1| (PREDICTED: uncharacterized protein LOC101208645 [Cucumis sativus])

HSP 1 Score: 103.2 bits (256), Expect = 1.8e-19
Identity = 53/60 (88.33%), Postives = 56/60 (93.33%), Query Frame = 1


Query: 1  MASRVGEDEET-TIAAENQTSSEKSWQKTDIELLMVIITFIGTISFQAGTNPPGGVWQDG 60
          MASRV ED+ET TIAAENQTSSEK+ QK DIELLMVIITFIGTISFQAGTNPPGGVWQ+G
Sbjct: 1  MASRVEEDQETATIAAENQTSSEKTLQKADIELLMVIITFIGTISFQAGTNPPGGVWQEG 60

[Close]

BLAST of MELO3C011478 vs. NCBI nr
Match: gi|778715279|ref|XP_011657373.1| (PREDICTED: uncharacterized protein LOC105435852 [Cucumis sativus])

HSP 1 Score: 58.9 bits (141), Expect = 3.9e-06
Identity = 22/43 (51.16%), Postives = 32/43 (74.42%), Query Frame = 1


Query: 16 ENQTSSEKSWQKTDIELLMVIITFIGTISFQAGTNPPGGVWQD 59
          +N+  +  +W + D + LMV+ TFI T++FQ GTNPPGGVWQ+
Sbjct: 26 KNKMMNNNNWMREDTDFLMVVTTFIATVAFQIGTNPPGGVWQE 68

[Close]

BLAST of MELO3C011478 vs. NCBI nr
Match: gi|659089597|ref|XP_008445596.1| (PREDICTED: uncharacterized protein LOC103488576 [Cucumis melo])

HSP 1 Score: 58.2 bits (139), Expect = 6.6e-06
Identity = 24/51 (47.06%), Postives = 34/51 (66.67%), Query Frame = 1


Query: 8  DEETTIAAENQTSSEKSWQKTDIELLMVIITFIGTISFQAGTNPPGGVWQD 59
          D   T   +N+  +  +W + D + LMV+ TFI T++FQ GTNPPGGVWQ+
Sbjct: 16 DTTETGHEKNKMMNNNNWIREDTDFLMVVTTFIATVAFQIGTNPPGGVWQE 66

The following BLAST results are available for this feature:

BLAST of MELO3C011478 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFJ5_CUCSA	1.2e-19	88.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G363010 PE=4 SV=1	[more]

BLAST of MELO3C011478 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659089467\|ref\|XP_008445524.1\|	1.7e-25	100.00	PREDICTED: uncharacterized protein LOC103488514 [Cucumis melo]	[more]
gi\|449452917\|ref\|XP_004144205.1\|	1.8e-19	88.33	PREDICTED: uncharacterized protein LOC101208645 [Cucumis sativus]	[more]
gi\|778715279\|ref\|XP_011657373.1\|	3.9e-06	51.16	PREDICTED: uncharacterized protein LOC105435852 [Cucumis sativus]	[more]
gi\|659089597\|ref\|XP_008445596.1\|	6.6e-06	47.06	PREDICTED: uncharacterized protein LOC103488576 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR026961	PGG_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016020	membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU47960	melon EST collection version 4.0	transcribed_cluster
MU58412	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C011478T1	MELO3C011478T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU58412	MU58412	transcribed_cluster
MU47960	MU47960	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026961	PGG domain	PFAM	PF13962	PGG	coord: 24..59 score: 6.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C011478	Csa6G363010	Cucumber (Chinese Long) v2	cumeB466
MELO3C011478	Cla021979	Watermelon (97103) v1	mewmB301
MELO3C011478	Cla97C08G152730	Watermelon (97103) v2	mewmbB303
MELO3C011478	Bhi04G001176	Wax gourd	mewgoB342
MELO3C011478	CSPI06G19150	Wild cucumber (PI 183967)	cpimeB464
MELO3C011478	Lsi08G008440	Bottle gourd (USVL1VR-Ls)	lsimeB470
MELO3C011478	CsGy6G018590	Cucumber (Gy14) v2	cgybmeB406
MELO3C011478	CsaV3_6G032030	Cucumber (Chinese Long) v3	cucmeB475

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C011478	Cucurbita maxima (Rimu)	cmameB164
MELO3C011478	Cucurbita maxima (Rimu)	cmameB724
MELO3C011478	Cucurbita moschata (Rifu)	cmomeB153
MELO3C011478	Cucurbita moschata (Rifu)	cmomeB715
MELO3C011478	Watermelon (Charleston Gray)	mewcgB296
MELO3C011478	Cucurbita pepo (Zucchini)	cpemeB088
MELO3C011478	Cucurbita pepo (Zucchini)	cpemeB763
MELO3C011478	Silver-seed gourd	carmeB0142
MELO3C011478	Silver-seed gourd	carmeB0695
MELO3C011478	Cucumber (Gy14) v1	cgymeB040