CsGy6G015290 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy6G015290
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Location	Chr6 : 13867973 .. 13868548 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGCCGCTCCTGCTTCAAAATTACTACCAAATATTTGCTTAACCCTTTTCCTTTCTCTAATTCTTCTCCTCCTTTTCTCTCTCATTTTAGCCTTCACTGTTTTCAAGCCCAAACAGCCTATCATCGTCGTCGATTCAGTTTCTCTGCTCGATCTAAACGTTTCTATAACCGACGGCGTCCATCTTAGTTTATCGCTCAATGTGGATCTAACCGTCCAGAATCCCAATAAAGTGGGCTTTGAATACTCTGAAAGCACGGCCGTTGTGATTTACAGAGGTGAAAAGGTGGGAGAAGCGCCGATTCCAGGTGGACGTTTACCGGGGAAAGGAACGGAGAAAATGAACCTAACGTTAACCATAATGGGGGACCGGATGCTGGGGAAGTCGGAGGTGTTTTCCGATGTGGTTTCGGGTCAACTTCCGATAAGTACCTTCGCTCGGTTACCTGGAAAAGTGAAGGTGATGAATGTTCTGAAGATTCATGTTGTGGCGTCGACGTCTTGTGATCTCATAATTGATGTTAAGAACGAAAGTTTTGGAGATCAACTATGCCAATACCGGACTACGCTTTGA

mRNA sequence

ATGGCCGCCGCTCCTGCTTCAAAATTACTACCAAATATTTGCTTAACCCTTTTCCTTTCTCTAATTCTTCTCCTCCTTTTCTCTCTCATTTTAGCCTTCACTGTTTTCAAGCCCAAACAGCCTATCATCGTCGTCGATTCAGTTTCTCTGCTCGATCTAAACGTTTCTATAACCGACGGCGTCCATCTTAGTTTATCGCTCAATGTGGATCTAACCGTCCAGAATCCCAATAAAGTGGGCTTTGAATACTCTGAAAGCACGGCCGTTGTGATTTACAGAGGTGAAAAGGTGGGAGAAGCGCCGATTCCAGGTGGACGTTTACCGGGGAAAGGAACGGAGAAAATGAACCTAACGTTAACCATAATGGGGGACCGGATGCTGGGGAAGTCGGAGGTGTTTTCCGATGTGGTTTCGGGTCAACTTCCGATAAGTACCTTCGCTCGGTTACCTGGAAAAGTGAAGGTGATGAATGTTCTGAAGATTCATGTTGTGGCGTCGACGTCTTGTGATCTCATAATTGATGTTAAGAACGAAAGTTTTGGAGATCAACTATGCCAATACCGGACTACGCTTTGA

Coding sequence (CDS)

ATGGCCGCCGCTCCTGCTTCAAAATTACTACCAAATATTTGCTTAACCCTTTTCCTTTCTCTAATTCTTCTCCTCCTTTTCTCTCTCATTTTAGCCTTCACTGTTTTCAAGCCCAAACAGCCTATCATCGTCGTCGATTCAGTTTCTCTGCTCGATCTAAACGTTTCTATAACCGACGGCGTCCATCTTAGTTTATCGCTCAATGTGGATCTAACCGTCCAGAATCCCAATAAAGTGGGCTTTGAATACTCTGAAAGCACGGCCGTTGTGATTTACAGAGGTGAAAAGGTGGGAGAAGCGCCGATTCCAGGTGGACGTTTACCGGGGAAAGGAACGGAGAAAATGAACCTAACGTTAACCATAATGGGGGACCGGATGCTGGGGAAGTCGGAGGTGTTTTCCGATGTGGTTTCGGGTCAACTTCCGATAAGTACCTTCGCTCGGTTACCTGGAAAAGTGAAGGTGATGAATGTTCTGAAGATTCATGTTGTGGCGTCGACGTCTTGTGATCTCATAATTGATGTTAAGAACGAAAGTTTTGGAGATCAACTATGCCAATACCGGACTACGCTTTGA

Protein sequence

MAAAPASKLLPNICLTLFLSLILLLLFSLILAFTVFKPKQPIIVVDSVSLLDLNVSITDGVHLSLSLNVDLTVQNPNKVGFEYSESTAVVIYRGEKVGEAPIPGGRLPGKGTEKMNLTLTIMGDRMLGKSEVFSDVVSGQLPISTFARLPGKVKVMNVLKIHVVASTSCDLIIDVKNESFGDQLCQYRTTL

Homology

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BLAST of CsGy6G015290 vs. NCBI nr
Match: XP_011658424.1 (PREDICTED: uncharacterized protein LOC105435999 [Cucumis sativus] >KGN47220.1 hypothetical protein Csa_6G212910 [Cucumis sativus])

HSP 1 Score: 359.4 bits (921), Expect = 7.7e-96
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 0


Query: 1   MAAAPASKLLPNICLTLFLSLILLLLFSLILAFTVFKPKQPIIVVDSVSLLDLNVSITDG 60
           MAAAPASKLLPNICLTLFLSLILLLLFSLILAFTVFKPKQPIIVVDSVSLLDLNVSITDG
Sbjct: 1   MAAAPASKLLPNICLTLFLSLILLLLFSLILAFTVFKPKQPIIVVDSVSLLDLNVSITDG 60

Query: 61  VHLSLSLNVDLTVQNPNKVGFEYSESTAVVIYRGEKVGEAPIPGGRLPGKGTEKMNLTLT 120
           VHLSLSLNVDLTVQNPNKVGFEYSESTAVVIYRGEKVGEAPIPGGRLPGKGTEKMNLTLT
Sbjct: 61  VHLSLSLNVDLTVQNPNKVGFEYSESTAVVIYRGEKVGEAPIPGGRLPGKGTEKMNLTLT 120

Query: 121 IMGDRMLGKSEVFSDVVSGQLPISTFARLPGKVKVMNVLKIHVVASTSCDLIIDVKNESF 180
           IMGDRMLGKSEVFSDVVSGQLPISTFARLPGKVKVMNVLKIHVVASTSCDLIIDVKNESF
Sbjct: 121 IMGDRMLGKSEVFSDVVSGQLPISTFARLPGKVKVMNVLKIHVVASTSCDLIIDVKNESF 180

Query: 181 GDQLCQYRTTL 192
           GDQLCQYRTTL
Sbjct: 181 GDQLCQYRTTL 191

[Close]

BLAST of CsGy6G015290 vs. NCBI nr
Match: XP_008465308.1 (PREDICTED: uncharacterized protein LOC103502964 [Cucumis melo])

HSP 1 Score: 280.8 bits (717), Expect = 3.5e-72
Identity = 149/187 (79.68%), Postives = 163/187 (87.17%), Query Frame = 0


Query: 3   AAPASKLLPNICLTLFLSLILLLLFSLILAFTVFKPKQPIIVVDSVSLLDLNVSITDGVH 62
           AAPASKLL N C+TL               FTVFKP++PIIVVDSVSLLDLNV++TDGV 
Sbjct: 2   AAPASKLLRNFCITLVXXXXXXXXXXXXXXFTVFKPQRPIIVVDSVSLLDLNVALTDGVD 61

Query: 63  LSLSLNVDLTVQNPNKVGFEYSESTAVVIYRGEKVGEAPIPGGRLPGKGTEKMNLTLTIM 122
           L+LS+NVDLTV+NPNKV FEYS+STAVVIYRGEKVGEAPIPGGRLPGKGT+KMNLTLTIM
Sbjct: 62  LNLSINVDLTVENPNKVAFEYSKSTAVVIYRGEKVGEAPIPGGRLPGKGTKKMNLTLTIM 121

Query: 123 GDRMLGKSEVFSDVVSGQLPISTFARLPGKVKVMNVLKIHVVASTSCDLIIDVKNESFGD 182
           G+RMLG+SEVFSDVVSGQL IST ARL GKVKVM V+KIHVVASTSCDLIIDVKN SFGD
Sbjct: 122 GERMLGRSEVFSDVVSGQLSISTLARLAGKVKVMGVVKIHVVASTSCDLIIDVKNGSFGD 181

Query: 183 QLCQYRT 190
           QLCQ+RT
Sbjct: 182 QLCQFRT 188

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BLAST of CsGy6G015290 vs. NCBI nr
Match: XP_023512272.1 (uncharacterized protein LOC111777064 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 213.8 bits (543), Expect = 5.2e-52
Identity = 118/188 (62.77%), Postives = 144/188 (76.60%), Query Frame = 0


Query: 3   AAPASKLLPNICLTLFLSLILLLLFSLILAFTVFKPKQPIIVVDSVSLLDLNVSITD--- 62
           AAP+ K L +IC+ + LS+ LL++  LILAFT FKPK+P I VDSVSLLDLN+S+     
Sbjct: 2   AAPSRK-LRSICIPVLLSVTLLVISILILAFTAFKPKRPTIAVDSVSLLDLNISLDAARL 61

Query: 63  GVHLSLSLNVDLTVQNPNKVGFEYSESTAVVIYRGEKVGEAPIPGGRLPGKGTEKMNLTL 122
            V L+LSL +DL+V+NPNKV FEYS STAVV YRGE++GEAPIP GRLP   TEKMNLTL
Sbjct: 62  SVDLNLSLLLDLSVENPNKVAFEYSYSTAVVSYRGEELGEAPIPAGRLPADRTEKMNLTL 121

Query: 123 TIMGDRMLGKSEVFSDVVSGQLPISTFARLPGKVKVMNVLKIHVVASTSCDLIIDVKNES 182
           T+M DR+L KSE+FSD +SG++PI+ F RL G VKV+ V KIHVVAS+SCD  I + N S
Sbjct: 122 TMMADRLLAKSELFSDAISGEVPINIFTRLSGIVKVIGVFKIHVVASSSCDFTIGIGNRS 181

Query: 183 FGDQLCQY 188
             DQ C Y
Sbjct: 182 IKDQKCHY 188

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BLAST of CsGy6G015290 vs. NCBI nr
Match: XP_022944105.1 (uncharacterized protein LOC111448649 [Cucurbita moschata])

HSP 1 Score: 211.1 bits (536), Expect = 3.4e-51
Identity = 116/188 (61.70%), Postives = 144/188 (76.60%), Query Frame = 0


Query: 3   AAPASKLLPNICLTLFLSLILLLLFSLILAFTVFKPKQPIIVVDSVSLLDLNVSITD--- 62
           AAP+ K L +IC+ + LS+ LL++  LILAFT FKPK+P I VDSVSLLDLN+S+     
Sbjct: 2   AAPSRK-LRSICIPVLLSVTLLIISILILAFTAFKPKRPTIAVDSVSLLDLNISLDAARL 61

Query: 63  GVHLSLSLNVDLTVQNPNKVGFEYSESTAVVIYRGEKVGEAPIPGGRLPGKGTEKMNLTL 122
            V L+LSL +DL+++NPNKV FEYS +TAVV YRGE++GEAPIP G LP   TEKMNLTL
Sbjct: 62  SVDLNLSLLLDLSIENPNKVAFEYSYTTAVVSYRGEELGEAPIPAGWLPADRTEKMNLTL 121

Query: 123 TIMGDRMLGKSEVFSDVVSGQLPISTFARLPGKVKVMNVLKIHVVASTSCDLIIDVKNES 182
           T+M DR+L KSE+FSD +SG++PI+ F RL G VKV+ V KIHVVAS+SCDL I + N S
Sbjct: 122 TMMADRLLAKSELFSDAISGEVPINIFTRLSGIVKVIGVFKIHVVASSSCDLTIGIGNRS 181

Query: 183 FGDQLCQY 188
             DQ C Y
Sbjct: 182 IEDQKCHY 188

[Close]

BLAST of CsGy6G015290 vs. NCBI nr
Match: XP_022986213.1 (uncharacterized protein LOC111484029 [Cucurbita maxima])

HSP 1 Score: 204.1 bits (518), Expect = 4.1e-49
Identity = 113/185 (61.08%), Postives = 139/185 (75.14%), Query Frame = 0


Query: 7   SKLLPNICLTLFLSLILLLLFSLILAFTVFKPKQPIIVVDSVSLLDLNVSITDGVHLSLS 66
           S+ L +IC+ + LS+ LL++  LILAFT FKPK+P I VDSVSLLDLN+S+ D   LS+ 
Sbjct: 5   SRKLRSICIPVLLSVTLLVISILILAFTAFKPKRPTIAVDSVSLLDLNISL-DAARLSVD 64

Query: 67  LN----VDLTVQNPNKVGFEYSESTAVVIYRGEKVGEAPIPGGRLPGKGTEKMNLTLTIM 126
           LN    +DL+V+NPNKV FEYS STAVV YRGE++GE PIP GRL    TEKMNLTL +M
Sbjct: 65  LNLFLLLDLSVENPNKVAFEYSYSTAVVSYRGEELGEVPIPAGRLLADRTEKMNLTLKMM 124

Query: 127 GDRMLGKSEVFSDVVSGQLPISTFARLPGKVKVMNVLKIHVVASTSCDLIIDVKNESFGD 186
            DR+L KSE+FSD +SG++PI+ F RL G VKV+ V KIHVVAS+SCDL I + N S  D
Sbjct: 125 ADRLLAKSELFSDAMSGEVPINIFTRLSGIVKVIGVFKIHVVASSSCDLTIGIGNRSIED 184

Query: 187 QLCQY 188
           Q C Y
Sbjct: 185 QKCHY 188

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BLAST of CsGy6G015290 vs. TAIR10
Match: AT3G54200.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 150.6 bits (379), Expect = 9.8e-37
Identity = 71/161 (44.10%), Postives = 114/161 (70.81%), Query Frame = 0


Query: 34  TVFKPKQPIIVVDSVSLLDLNVSITD---GVHLSLSLNVDLTVQNPNKVGFEYSESTAVV 93
           T+FKPK+P   +DSV++  L  S+      V L+L+LNVDL+++NPN++GF Y  S+A++
Sbjct: 75  TLFKPKRPTTTIDSVTVDRLQASVNPLLLKVLLNLTLNVDLSLKNPNRIGFSYDSSSALL 134

Query: 94  IYRGEKVGEAPIPGGRLPGKGTEKMNLTLTIMGDRMLGKSEVFSDVVSGQLPISTFARLP 153
            YRG+ +GEAP+P  R+  + T  +N+TLT+M DR+L ++++ SDV++G +P++TF ++ 
Sbjct: 135 NYRGQVIGEAPLPANRIAARKTVPLNITLTLMADRLLSETQLLSDVMAGVIPLNTFVKVT 194

Query: 154 GKVKVMNVLKIHVVASTSCDLIIDVKNESFGDQLCQYRTTL 192
           GKV V+ + KI V +S+SCDL I V + +   Q C+Y T L
Sbjct: 195 GKVTVLKIFKIKVQSSSSCDLSISVSDRNVTSQHCKYSTKL 235

[Close]

BLAST of CsGy6G015290 vs. TAIR10
Match: AT2G46150.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 94.0 bits (232), Expect = 1.1e-19
Identity = 64/186 (34.41%), Postives = 112/186 (60.22%), Query Frame = 0


Query: 12  NICLTLFLSLILLLLFSLILAFTVFKPKQPIIVVDSVSLLDL-NVSITDGVHL---SLSL 71
           +IC+T   + ++L    L L FTVF+ K PII ++ V +  L +V+ T+ V L   ++S+
Sbjct: 39  SICVT--ATSLILTTIVLTLVFTVFRVKDPIIKMNGVMVNGLDSVTGTNQVQLLGTNISM 98

Query: 72  NVDLTVQNPNKVGFEYSESTAVVIYRGEKVGEA-PIPGGRLPGKGTEKMNLTLTIMGDRM 131
            VD++V+NPN   F+YS +T  + Y+G  VGEA  +PG   P + T +MN+T+ IM DR+
Sbjct: 99  IVDVSVKNPNTASFKYSNTTTDIYYKGTLVGEAHGLPGKARPHR-TSRMNVTVDIMLDRI 158

Query: 132 LGKSEVFSDVV-SGQLPISTFARLPGKVKVMNVLKIHVVASTSCDLIIDVKNESFGDQLC 191
           L    +  ++  SG + + ++ R+ GKVK+M ++K HV    +C + +++  ++  D  C
Sbjct: 159 LSDPGLGREISRSGLVNVWSYTRVGGKVKIMGIVKKHVTVKMNCTMAVNITGQAIQDVDC 218

[Close]

BLAST of CsGy6G015290 vs. TAIR10
Match: AT3G05975.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 90.1 bits (222), Expect = 1.6e-18
Identity = 56/183 (30.60%), Postives = 102/183 (55.74%), Query Frame = 0


Query: 14  CLTLFLSLILLLLF--SLILAFTVFKPKQPII--VVDSVSLLDLNVSITDGVHLSLSLNV 73
           C+   +  +L ++F  +LILA  VFKPK PI+  V  +V  +  N+S+   V L+ +L +
Sbjct: 8   CIVSGIIFVLFVIFMTALILA-QVFKPKHPILQTVSSTVDGISTNISLPYEVQLNFTLTL 67

Query: 74  DLTVQNPNKVGFEYSESTAVVIYRGEKVGEAPIPGGRLPGKGTEKMNLTLTIMGDRMLGK 133
           ++ ++NPN   FEY     +V YR   VG   +P   LP KG+  +   L +  D+ +  
Sbjct: 68  EMLLKNPNVADFEYKTVENLVYYRDTLVGNLTLPSSTLPAKGSVLLPCPLFLQLDKFVAN 127

Query: 134 -SEVFSDVVSGQLPISTFARLPGKVKVMNVLKIHVVASTSCDLIIDVKNESFGDQLCQYR 192
             ++  DV+ G++ + T A++PGK+ ++ + KI + + + C+L++   +    DQ+C  +
Sbjct: 128 LGDIVQDVLHGKIVMETRAKMPGKITLLGIFKIPLDSISHCNLVLGFPSMVVEDQVCDLK 187

[Close]

BLAST of CsGy6G015290 vs. TAIR10
Match: AT2G01080.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 55.1 bits (131), Expect = 5.6e-08
Identity = 35/130 (26.92%), Postives = 66/130 (50.77%), Query Frame = 0


Query: 63  LSLSLNVDLTVQNPNKVGFEYSESTAVVIYRGEKVGEAPIPGGRLPGKGTEKMNLTLTIM 122
           LSL++ +  T  NPNKVG  Y ES+  V+Y+G  +G A +PG       T+ +  T+++ 
Sbjct: 99  LSLTIRMLFTAVNPNKVGIRYGESSFTVMYKGMPLGRATVPGFYQDAHSTKNVEATISV- 158

Query: 123 GDRMLGKSEVFSDVV-----SGQLPISTFARLPGKVKVMNVLKIHVVASTSCDLIIDVKN 182
            DR+       +D+V     + ++ ++    +  K++VMN     V  S +C + I  + 
Sbjct: 159 -DRVNLMQAHAADLVRDASLNDRVELTVRGDVGAKIRVMNFDSPGVQVSVNCGIGISPRK 218

Query: 183 ESFGDQLCQY 188
           ++   + C +
Sbjct: 219 QALIYKQCGF 226

[Close]

BLAST of CsGy6G015290 vs. TAIR10
Match: AT4G23930.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 51.2 bits (121), Expect = 8.1e-07
Identity = 39/174 (22.41%), Postives = 79/174 (45.40%), Query Frame = 0


Query: 14  CLTLFLSLILLLLFSLILAFTVFKPKQPIIVVDSVSLLDLNVSITDGVHLSLSLNVDLTV 73
           C    L ++ L++ +L +  TVF+P+ P I V SV +   +V+ +    +S + +    V
Sbjct: 11  CAVATLFIVFLIIAALTVYLTVFRPRDPEISVTSVKVPSFSVANSS---VSFTFSQFSAV 70

Query: 74  QNPNKVGFEYSESTAVVIYRGEKVGEAPIPGGRLPGKGTEKMNLTLTIMGDRMLGKSE-- 133
           +NPN+  F +  +   + Y G ++G   +P G +    T++M  T ++    +   S   
Sbjct: 71  RNPNRAAFSHYNNVIQLFYYGNRIGYTFVPAGEIESGRTKRMLATFSVQSFPLAAASSSQ 130

Query: 134 ------VFSDVVSGQLPISTFARLPGKVKVMNVLKIHVVASTSCDLIIDVKNES 180
                   SD     + I +   + G+V+V+ +    + A  +C + I   + S
Sbjct: 131 ISAAQFQNSDRSGSTVEIESKLEMAGRVRVLGLFTHRIAAKCNCRIAISSSDGS 181

[Close]

BLAST of CsGy6G015290 vs. TrEMBL
Match: tr|A0A0A0KBX8|A0A0A0KBX8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G212910 PE=4 SV=1)

HSP 1 Score: 359.4 bits (921), Expect = 5.1e-96
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 0


Query: 1   MAAAPASKLLPNICLTLFLSLILLLLFSLILAFTVFKPKQPIIVVDSVSLLDLNVSITDG 60
           MAAAPASKLLPNICLTLFLSLILLLLFSLILAFTVFKPKQPIIVVDSVSLLDLNVSITDG
Sbjct: 1   MAAAPASKLLPNICLTLFLSLILLLLFSLILAFTVFKPKQPIIVVDSVSLLDLNVSITDG 60

Query: 61  VHLSLSLNVDLTVQNPNKVGFEYSESTAVVIYRGEKVGEAPIPGGRLPGKGTEKMNLTLT 120
           VHLSLSLNVDLTVQNPNKVGFEYSESTAVVIYRGEKVGEAPIPGGRLPGKGTEKMNLTLT
Sbjct: 61  VHLSLSLNVDLTVQNPNKVGFEYSESTAVVIYRGEKVGEAPIPGGRLPGKGTEKMNLTLT 120

Query: 121 IMGDRMLGKSEVFSDVVSGQLPISTFARLPGKVKVMNVLKIHVVASTSCDLIIDVKNESF 180
           IMGDRMLGKSEVFSDVVSGQLPISTFARLPGKVKVMNVLKIHVVASTSCDLIIDVKNESF
Sbjct: 121 IMGDRMLGKSEVFSDVVSGQLPISTFARLPGKVKVMNVLKIHVVASTSCDLIIDVKNESF 180

Query: 181 GDQLCQYRTTL 192
           GDQLCQYRTTL
Sbjct: 181 GDQLCQYRTTL 191

[Close]

BLAST of CsGy6G015290 vs. TrEMBL
Match: tr|A0A1S3CNL0|A0A1S3CNL0_CUCME (uncharacterized protein LOC103502964 OS=Cucumis melo OX=3656 GN=LOC103502964 PE=4 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 2.3e-72
Identity = 149/187 (79.68%), Postives = 163/187 (87.17%), Query Frame = 0


Query: 3   AAPASKLLPNICLTLFLSLILLLLFSLILAFTVFKPKQPIIVVDSVSLLDLNVSITDGVH 62
           AAPASKLL N C+TL               FTVFKP++PIIVVDSVSLLDLNV++TDGV 
Sbjct: 2   AAPASKLLRNFCITLVXXXXXXXXXXXXXXFTVFKPQRPIIVVDSVSLLDLNVALTDGVD 61

Query: 63  LSLSLNVDLTVQNPNKVGFEYSESTAVVIYRGEKVGEAPIPGGRLPGKGTEKMNLTLTIM 122
           L+LS+NVDLTV+NPNKV FEYS+STAVVIYRGEKVGEAPIPGGRLPGKGT+KMNLTLTIM
Sbjct: 62  LNLSINVDLTVENPNKVAFEYSKSTAVVIYRGEKVGEAPIPGGRLPGKGTKKMNLTLTIM 121

Query: 123 GDRMLGKSEVFSDVVSGQLPISTFARLPGKVKVMNVLKIHVVASTSCDLIIDVKNESFGD 182
           G+RMLG+SEVFSDVVSGQL IST ARL GKVKVM V+KIHVVASTSCDLIIDVKN SFGD
Sbjct: 122 GERMLGRSEVFSDVVSGQLSISTLARLAGKVKVMGVVKIHVVASTSCDLIIDVKNGSFGD 181

Query: 183 QLCQYRT 190
           QLCQ+RT
Sbjct: 182 QLCQFRT 188

[Close]

BLAST of CsGy6G015290 vs. TrEMBL
Match: tr|A0A0D2UBU9|A0A0D2UBU9_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_010G137000 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 8.0e-41
Identity = 89/180 (49.44%), Postives = 123/180 (68.33%), Query Frame = 0


Query: 12  NICLTLFLSLILLLLFSLILAFTVFKPKQPIIVVDSVSLLDLNVSITD---GVHLSLSLN 71
           NIC      LI +++  +ILAFTVFKPK P+I VDSV+L DL   +      V  + SL+
Sbjct: 24  NICFATMGGLIFIIILIVILAFTVFKPKNPVITVDSVTLSDLKFYLDTTKFQVLFNFSLD 83

Query: 72  VDLTVQNPNKVGFEYSESTAVVIYRGEKVGEAPIPGGRLPGKGTEKMNLTLTIMGDRMLG 131
           VDLT++N NKVGF+Y++S A + YRG+KVGE PIP G++    T  MNLT+T+M DR + 
Sbjct: 84  VDLTIKNSNKVGFKYADSAAELNYRGQKVGEVPIPAGKISADKTAPMNLTVTVMADRFIS 143

Query: 132 KSEVFSDVVSGQLPISTFARLPGKVKVMNVLKIHVVASTSCDLIIDVKNESFGDQLCQYR 189
            S  F+DV  G+LP+ TF  + GKV ++N+ K HVV++TSCD+I+ + N S GDQ C Y+
Sbjct: 144 DSNFFADVSGGELPLETFCEISGKVNILNLFKFHVVSTTSCDIIVFLSNSSAGDQNCNYK 203

[Close]

BLAST of CsGy6G015290 vs. TrEMBL
Match: tr|V7AQU5|V7AQU5_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_010G060100g PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 1.0e-40
Identity = 90/182 (49.45%), Postives = 129/182 (70.88%), Query Frame = 0


Query: 13  ICLTLFLSLILLLLFSLILAFTVFKPKQPIIVVDSVSLLDLNVSITDG---VHLSLSLNV 72
           +CLT+   +I L+L  +ILA TVFK K P+  VDS  L D +VS+      V L+++L  
Sbjct: 11  VCLTVTGVVIALVLLIVILALTVFKAKHPVTTVDSTKLEDFHVSLDIAKLRVDLNVTLRT 70

Query: 73  DLTVQNPNKVGFEYSESTAVVIYRGEKVGEAPIPGGRLPGKGTEKMNLTLTIMGDRMLGK 132
           D++V NPNKVGF+YS+S A + YRG+ +GE P+P G +    T+  NLTLTIM DR+L  
Sbjct: 71  DVSVMNPNKVGFKYSDSIAHLNYRGQLIGEVPLPAGEISSGETKGFNLTLTIMADRLLSN 130

Query: 133 SEVFSDVVSGQLPISTFARLPGKVKVMNVLKIHVVASTSCDLIIDVKNESFGDQLCQYRT 192
           S++FSDV SG LP++TF R+ GKV ++  +K+HV++STSCDL+I++ N + G+Q CQY+T
Sbjct: 131 SQLFSDVTSGTLPLNTFVRISGKVSILGFIKVHVLSSTSCDLVINLSNRTVGNQECQYKT 190

[Close]

BLAST of CsGy6G015290 vs. TrEMBL
Match: tr|A0A1U8IYP4|A0A1U8IYP4_GOSHI (uncharacterized protein LOC107900368 OS=Gossypium hirsutum OX=3635 GN=LOC107900368 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 3.0e-40
Identity = 89/180 (49.44%), Postives = 122/180 (67.78%), Query Frame = 0


Query: 12  NICLTLFLSLILLLLFSLILAFTVFKPKQPIIVVDSVSLLDLNVSITD---GVHLSLSLN 71
           NIC      LI +++  +ILAFTVFKPK P+I VDSV+L DL   +      V  + SL+
Sbjct: 24  NICFATMGGLIFIIILIVILAFTVFKPKNPVITVDSVTLSDLKFYLDTTKFQVLFNFSLD 83

Query: 72  VDLTVQNPNKVGFEYSESTAVVIYRGEKVGEAPIPGGRLPGKGTEKMNLTLTIMGDRMLG 131
           VDLT++N NKVGF+Y++S A + YRG KVGE PIP G++    T  MNLT+T+M DR + 
Sbjct: 84  VDLTIKNSNKVGFKYADSAAELNYRGLKVGEVPIPAGKISADKTAPMNLTVTVMADRFIS 143

Query: 132 KSEVFSDVVSGQLPISTFARLPGKVKVMNVLKIHVVASTSCDLIIDVKNESFGDQLCQYR 189
            S  F+DV  G+LP+ TF  + GKV ++N+ K HVV++TSCD+I+ + N S GDQ C Y+
Sbjct: 144 DSNFFADVSGGELPLETFCEISGKVNILNLFKFHVVSTTSCDIIVFLSNSSAGDQNCNYK 203

The following BLAST results are available for this feature:

BLAST of CsGy6G015290 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011658424.1	7.7e-96	100.00	PREDICTED: uncharacterized protein LOC105435999 [Cucumis sativus] >KGN47220.1 hy...	[more]
XP_008465308.1	3.5e-72	79.68	PREDICTED: uncharacterized protein LOC103502964 [Cucumis melo]	[more]
XP_023512272.1	5.2e-52	62.77	uncharacterized protein LOC111777064 [Cucurbita pepo subsp. pepo]	[more]
XP_022944105.1	3.4e-51	61.70	uncharacterized protein LOC111448649 [Cucurbita moschata]	[more]
XP_022986213.1	4.1e-49	61.08	uncharacterized protein LOC111484029 [Cucurbita maxima]	[more]

BLAST of CsGy6G015290 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G54200.1	9.8e-37	44.10	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT2G46150.1	1.1e-19	34.41	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT3G05975.1	1.6e-18	30.60	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT2G01080.1	5.6e-08	26.92	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT4G23930.1	8.1e-07	22.41	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]

BLAST of CsGy6G015290 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy6G015290 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KBX8\|A0A0A0KBX8_CUCSA	5.1e-96	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G212910 PE=4 SV=1	[more]
tr\|A0A1S3CNL0\|A0A1S3CNL0_CUCME	2.3e-72	79.68	uncharacterized protein LOC103502964 OS=Cucumis melo OX=3656 GN=LOC103502964 PE=...	[more]
tr\|A0A0D2UBU9\|A0A0D2UBU9_GOSRA	8.0e-41	49.44	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_010G137000 PE=4 ...	[more]
tr\|V7AQU5\|V7AQU5_PHAVU	1.0e-40	49.45	Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_010G060100g PE=4 ...	[more]
tr\|A0A1U8IYP4\|A0A1U8IYP4_GOSHI	3.0e-40	49.44	uncharacterized protein LOC107900368 OS=Gossypium hirsutum OX=3635 GN=LOC1079003...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004864	LEA_2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G015290.1	CsGy6G015290.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004864	Late embryogenesis abundant protein, LEA_2 subgroup	PFAM	PF03168	LEA_2	coord: 71..157 e-value: 4.3E-12 score: 46.4
None	No IPR available	PANTHER	PTHR31852	FAMILY NOT NAMED	coord: 12..189
None	No IPR available	PANTHER	PTHR31852:SF43	LATE EMBRYOGENESIS ABUNDANT HYDROXYPROLINE-RICH GLYCOPROTEIN	coord: 12..189
None	No IPR available	SUPERFAMILY	SSF117070	LEA14-like	coord: 23..126

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy6G015290	Cla013411	Watermelon (97103) v1	cgybwmB492
CsGy6G015290	Csa6G212910	Cucumber (Chinese Long) v2	cgybcuB287
CsGy6G015290	ClCG02G019140	Watermelon (Charleston Gray)	cgybwcgB417
CsGy6G015290	CSPI06G15050	Wild cucumber (PI 183967)	cgybcpiB293
CsGy6G015290	CmoCh20G003410	Cucurbita moschata (Rifu)	cgybcmoB785
CsGy6G015290	Lsi10G014760	Bottle gourd (USVL1VR-Ls)	cgyblsiB375
CsGy6G015290	Cp4.1LG16g06730	Cucurbita pepo (Zucchini)	cgybcpeB764
CsGy6G015290	CsaV3_6G019050	Cucumber (Chinese Long) v3	cgybcucB298
CsGy6G015290	Cla97C02G045060	Watermelon (97103) v2	cgybwmbB424
CsGy6G015290	Bhi10G000678	Wax gourd	cgybwgoB574

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy6G015290	Cucurbita maxima (Rimu)	cgybcmaB805