CsGy6G013440 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy6G013440
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	SWR1 complex subunit 6
Location	Chr6 : 11905779 .. 11908385 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTATTACTAACAAAAATTAAATTGATAAATTCAGAATTTAATACCGGTGAACTCCACGCTACACTTTGGCACTCGGCCACCGTAGGCCTAACTTTCCAGTTTAAATAACGCCGGTCGCCGGAATTGACAACAGTCAACATTCACCGGAAGTCCATCCACTCTAATTCCCCCACTCTTCTTCTTCTCCGACTCGTAGGGTTTGGAACTTTCTCTCTTTCGCTCATTTCAGTTTCGTTCTTACTGCTCAAAATCAAAGTATTATGCGAAACCTAGGGTTTTTTTTTTTTTTTTTTTCTTTTCTTACTGCAACTCTTCTATTCTGATTTCTTATGAGAATTCTCTAATCGCGCTAATTTTAATCTTTCGTCTTTTCCATTCAAGGATCTGAGTGTGCGGTTGTAGCTATCAATGGATGATGATTCTACGAATCCATTCCGACGTATGTCGAGCCGTACTCGGAAGGTTGCTCCTAAGATGGTTGCTGCCCTAGCCAGCAGCGACAACCGTACGCAGGTTTGTTTGGTGAACTAGATTTTGCTTCTTTGTTGTGAGCTACTGGTGCTGTAATTGATTAGTTTAAGGTTGTACTCTATATTTACAATGTACGTTTTTAATTTTGGTTTTTCTGCTCTTCAGGCAGCACTTGCTCGTCTAGAGGCATTGGAAAATGACAATGCGGGAGTGGAAGTAGTCGAAAACATTGACGATGAGGATGCTTCTCTCGATGATGATGATCAAGGTTATTCATTCATCTTCTTTCAACTTTGGCCTTTTTCTTGTAGAGTGCCCTCTTCAATTACATCAATCAAATGTTAGACATCTAATATTTTCCCATTTTTTTCTGTTGCACTGATTATTCCCATCATCTAATCCAATGTGAAAGTAAGCCAGAATTGCTTTTGGTTCTTCGATTCCTGTTATCTGTTAAGCCTATTGACTTTGGTGTATGGTCGAGAAAATTTTCGTCTTCTCTGTCTTTAGAAATTCTGTAAAAAAACCAAGATGGCCAGCAACAGAACTCAGATATCGCATTGGCCATGGAGTTTTAGTACTCGTTAATTGCCCGATTTTCTGCTATGGTACCTGGATTACAATCAGCCACTGAGGGTGAGATTCCAGGTTCATTCGTATGGAATTTTTTAGGGATTTTACAATTCCTGAGTGTTGGGATGATAAATGGAGAAGGATGGAATCTGCATTTGGCAATGCAGCTTTCAGAACTAGAATTTGGTGATTGGGTTGGGCTTCCTTTCTACAAATTCTTGCCCACCTACTTGGCAAGAAGATAGGTGGAGAAGTAATTTAAAAGACTCTGGTGATATGATTCTCTGAATTCTTGGACAAGTTTCAGCTGATATTCGCTTTCCTTATTAGTCTGAACTGGTGGCTTTTGTGTACGATTGGTGCTGAAAAGACCAAGATCATGTTTTTCCAAGGGGTGCATAGCTTATAATTGTTGCACGGGAGTGTGGTTTGAGTTTGTGTCTTTCTCATAGTTCCTACGACAATATCACCAAGCCAACTGTTGTGTAGTCATCCTATTTGGTGAAGAGCAAAGTTGGTGTGGGCTAATTGCTGTCGACGCTATCCCATAGCATTTTGGGAAGGAATAATCCATAGGATTTTCATAGGAAAGTGTCACAATTTTGGGGAGATATGATATTTCATCAGTTTTTGGTTATCGTCTTGGCGAACTCTAATCGAATCATTTGAAATTGTCCTCTCTTTCTTGTTTTGTTTGTCCAACCCAATTTCTGTTGTTGTTTATAGGCTCCACATGCTTCAAAATCGGTTGATATATCATCTCTTTCATTCCTCCTTTTGTACTCTTGTGTTTAGTTTCGTATAGAGAAATCACTTTAAAATGAAATTCATTTCCAAGGAATAATAGAACCCGTCAACTTCAATTCTTGCATTGATTCAAACAGATTGAATTATACTCTTCTATACCTTAGAGTGTTGTTTGGTATTTAGTGTCACTAATCTTTACCCCTTTTTAACCCCAATGCAGCATACATAAAGCGGCAATCAAAGGGCACTAAACGGAAAACTAGACAGGCAAAAGCACTTGAAGCTAAGAAAGCTCCCAAAACTTTTATGGAGCTTCTGCACGAGGTTTGTATCAGAGCTTCTTCTACTTCGTGGCCTTATTAGATTGCAATAAAAAGTTTGTTTTGATGTTGAGCTACAATAAAAACAGGCAAATTTGGAGTCATTGCCTCCACATGTTCCATCATACTTGAAGGCGGCCGTTGGACCTCCAAGCTCTACCTCACGCCGGCATTTCTGCACAGTTTGCGGTTTTGCTGCGAGCTACACGTGCATAAGGTGTGGAATCCGCTTTTGTTCATCTCGTTGCCAGAATATACATAACGATACTCGTTGTTTGAAATTTGTTGCCTAATAGGTTGATAGCGATAGGCAGGTGGATCCACTCGAATTTTGTAGATTATATTGAACTCACTACTCAAATCTCTGTAAATTATAATGTAGTCTTAATACTCATTTTTCTCTTCATGGTTAAGCCTCACATCTTGTTTCCTTGTGTGTTTGTGGTCCACTACATGAATTATGCTTCTTCTCACGAATCTATTTGGAATGAC

mRNA sequence

ATGATTATTACTAACAAAAATTAAATTGATAAATTCAGAATTTAATACCGGTGAACTCCACGCTACACTTTGGCACTCGGCCACCGTAGGCCTAACTTTCCAGTTTAAATAACGCCGGTCGCCGGAATTGACAACAGTCAACATTCACCGGAAGTCCATCCACTCTAATTCCCCCACTCTTCTTCTTCTCCGACTCGTAGGGATCTGAGTGTGCGGTTGTAGCTATCAATGGATGATGATTCTACGAATCCATTCCGACGTATGTCGAGCCGTACTCGGAAGGTTGCTCCTAAGATGGTTGCTGCCCTAGCCAGCAGCGACAACCGTACGCAGGCAGCACTTGCTCGTCTAGAGGCATTGGAAAATGACAATGCGGGAGTGGAAGTAGTCGAAAACATTGACGATGAGGATGCTTCTCTCGATGATGATGATCAAGCATACATAAAGCGGCAATCAAAGGGCACTAAACGGAAAACTAGACAGGCAAAAGCACTTGAAGCTAAGAAAGCTCCCAAAACTTTTATGGAGCTTCTGCACGAGGCAAATTTGGAGTCATTGCCTCCACATGTTCCATCATACTTGAAGGCGGCCGTTGGACCTCCAAGCTCTACCTCACGCCGGCATTTCTGCACAGTTTGCGGTTTTGCTGCGAGCTACACGTGCATAAGGTGTGGAATCCGCTTTTGTTCATCTCGTTGCCAGAATATACATAACGATACTCGTTGTTTGAAATTTGTTGCCTAATAGGTTGATAGCGATAGGCAGGTGGATCCACTCGAATTTTGTAGATTATATTGAACTCACTACTCAAATCTCTGTAAATTATAATGTAGTCTTAATACTCATTTTTCTCTTCATGGTTAAGCCTCACATCTTGTTTCCTTGTGTGTTTGTGGTCCACTACATGAATTATGCTTCTTCTCACGAATCTATTTGGAATGAC

Coding sequence (CDS)

ATGGATGATGATTCTACGAATCCATTCCGACGTATGTCGAGCCGTACTCGGAAGGTTGCTCCTAAGATGGTTGCTGCCCTAGCCAGCAGCGACAACCGTACGCAGGCAGCACTTGCTCGTCTAGAGGCATTGGAAAATGACAATGCGGGAGTGGAAGTAGTCGAAAACATTGACGATGAGGATGCTTCTCTCGATGATGATGATCAAGCATACATAAAGCGGCAATCAAAGGGCACTAAACGGAAAACTAGACAGGCAAAAGCACTTGAAGCTAAGAAAGCTCCCAAAACTTTTATGGAGCTTCTGCACGAGGCAAATTTGGAGTCATTGCCTCCACATGTTCCATCATACTTGAAGGCGGCCGTTGGACCTCCAAGCTCTACCTCACGCCGGCATTTCTGCACAGTTTGCGGTTTTGCTGCGAGCTACACGTGCATAAGGTGTGGAATCCGCTTTTGTTCATCTCGTTGCCAGAATATACATAACGATACTCGTTGTTTGAAATTTGTTGCCTAA

Protein sequence

MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGVEVVENIDDEDASLDDDDQAYIKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA

Homology

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BLAST of CsGy6G013440 vs. NCBI nr
Match: XP_004143171.1 (PREDICTED: SWR1 complex subunit 6 [Cucumis sativus] >XP_011657114.1 PREDICTED: SWR1 complex subunit 6 [Cucumis sativus] >KGN47046.1 hypothetical protein Csa_6G181510 [Cucumis sativus])

HSP 1 Score: 330.9 bits (847), Expect = 2.6e-87
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGVEVVENIDDE 60
           MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGVEVVENIDDE
Sbjct: 1   MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGVEVVENIDDE 60

Query: 61  DASLDDDDQAYIKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLKA 120
           DASLDDDDQAYIKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLKA
Sbjct: 61  DASLDDDDQAYIKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLKA 120

Query: 121 AVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA 172
           AVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA
Sbjct: 121 AVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA 171

[Close]

BLAST of CsGy6G013440 vs. NCBI nr
Match: XP_008463835.1 (PREDICTED: SWR1 complex subunit 6 [Cucumis melo] >XP_008463836.1 PREDICTED: SWR1 complex subunit 6 [Cucumis melo] >XP_008463837.1 PREDICTED: SWR1 complex subunit 6 [Cucumis melo])

HSP 1 Score: 328.2 bits (840), Expect = 1.7e-86
Identity = 169/171 (98.83%), Postives = 170/171 (99.42%), Query Frame = 0


Query: 1   MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGVEVVENIDDE 60
           MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAG+EVVENIDDE
Sbjct: 1   MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEVVENIDDE 60

Query: 61  DASLDDDDQAYIKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLKA 120
           DASLDDDDQAYIKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSY KA
Sbjct: 61  DASLDDDDQAYIKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYFKA 120

Query: 121 AVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA 172
           AVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA
Sbjct: 121 AVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA 171

[Close]

BLAST of CsGy6G013440 vs. NCBI nr
Match: XP_022943643.1 (SWR1 complex subunit 6 [Cucurbita moschata] >XP_022943644.1 SWR1 complex subunit 6 [Cucurbita moschata] >XP_022943645.1 SWR1 complex subunit 6 [Cucurbita moschata] >XP_022943647.1 SWR1 complex subunit 6 [Cucurbita moschata] >XP_022943648.1 SWR1 complex subunit 6 [Cucurbita moschata] >XP_023512986.1 SWR1 complex subunit 6 isoform X2 [Cucurbita pepo subsp. pepo] >XP_023512987.1 SWR1 complex subunit 6 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 312.0 bits (798), Expect = 1.3e-81
Identity = 161/172 (93.60%), Postives = 169/172 (98.26%), Query Frame = 0


Query: 1   MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGVEVVENIDDE 60
           MDDD+TN FRRMSSRTRKVAPKMVAALASSDNR+QAALARLEALENDNAG+E++ENIDDE
Sbjct: 1   MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRSQAALARLEALENDNAGLELIENIDDE 60

Query: 61  DASLDDDDQAYI-KRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLK 120
           DASLDDD+QAYI KRQSKGTKRKTRQAKALEAKKAPKTFMELLHEA+LESLPPHVPSYLK
Sbjct: 61  DASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEASLESLPPHVPSYLK 120

Query: 121 AAVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA 172
           AAVGPPSSTSRRHFCTVCGFAASYTCIRCG+RFCS RCQNIHNDTRCLKFVA
Sbjct: 121 AAVGPPSSTSRRHFCTVCGFAASYTCIRCGVRFCSCRCQNIHNDTRCLKFVA 172

[Close]

BLAST of CsGy6G013440 vs. NCBI nr
Match: XP_023512985.1 (SWR1 complex subunit 6 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 312.0 bits (798), Expect = 1.3e-81
Identity = 161/172 (93.60%), Postives = 169/172 (98.26%), Query Frame = 0


Query: 1   MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGVEVVENIDDE 60
           MDDD+TN FRRMSSRTRKVAPKMVAALASSDNR+QAALARLEALENDNAG+E++ENIDDE
Sbjct: 21  MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRSQAALARLEALENDNAGLELIENIDDE 80

Query: 61  DASLDDDDQAYI-KRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLK 120
           DASLDDD+QAYI KRQSKGTKRKTRQAKALEAKKAPKTFMELLHEA+LESLPPHVPSYLK
Sbjct: 81  DASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEASLESLPPHVPSYLK 140

Query: 121 AAVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA 172
           AAVGPPSSTSRRHFCTVCGFAASYTCIRCG+RFCS RCQNIHNDTRCLKFVA
Sbjct: 141 AAVGPPSSTSRRHFCTVCGFAASYTCIRCGVRFCSCRCQNIHNDTRCLKFVA 192

[Close]

BLAST of CsGy6G013440 vs. NCBI nr
Match: XP_022986949.1 (SWR1 complex subunit 6 [Cucurbita maxima] >XP_022986950.1 SWR1 complex subunit 6 [Cucurbita maxima] >XP_022986952.1 SWR1 complex subunit 6 [Cucurbita maxima])

HSP 1 Score: 311.2 bits (796), Expect = 2.1e-81
Identity = 160/172 (93.02%), Postives = 169/172 (98.26%), Query Frame = 0


Query: 1   MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGVEVVENIDDE 60
           MDDD+TN FRRMSSRTRKVAPKMVAALASSDNR+QAALARLEALENDNAG+E++ENIDDE
Sbjct: 1   MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRSQAALARLEALENDNAGLELIENIDDE 60

Query: 61  DASLDDDDQAYI-KRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLK 120
           DASLDDD+QAYI KRQSKGTKRKTRQAKALEAKKAPKTFMELLHEA+LESLPPHVPSY+K
Sbjct: 61  DASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEASLESLPPHVPSYIK 120

Query: 121 AAVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA 172
           AAVGPPSSTSRRHFCTVCGFAASYTCIRCG+RFCS RCQNIHNDTRCLKFVA
Sbjct: 121 AAVGPPSSTSRRHFCTVCGFAASYTCIRCGVRFCSCRCQNIHNDTRCLKFVA 172

[Close]

BLAST of CsGy6G013440 vs. TAIR10
Match: AT5G37055.1 (HIT-type Zinc finger family protein)

HSP 1 Score: 233.8 bits (595), Expect = 7.9e-62
Identity = 124/173 (71.68%), Postives = 148/173 (85.55%), Query Frame = 0


Query: 1   MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGVEVVENIDDE 60
           M+++ +N  RR+S+RTRKVA KM AAL S+DNRTQAA+ARLEALENDN  +EV++  DDE
Sbjct: 1   MEEEMSN--RRVSNRTRKVATKMAAALTSNDNRTQAAIARLEALENDNGAIEVIDLNDDE 60

Query: 61  DASLD-DDDQAYI-KRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYL 120
           +ASLD DDD  Y+ K+Q KG+KRKTRQAKALEA+KAPK+F+ELL EANLESLP HVP+YL
Sbjct: 61  EASLDEDDDLGYLQKKQHKGSKRKTRQAKALEARKAPKSFLELLQEANLESLPSHVPTYL 120

Query: 121 KAAVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA 172
           KAAVGPPSS+SRR+FC+VCG+ A Y C  CG+RFCS RCQNIH DTRC KFVA
Sbjct: 121 KAAVGPPSSSSRRYFCSVCGYIAGYNCCLCGMRFCSIRCQNIHKDTRCQKFVA 171

[Close]

BLAST of CsGy6G013440 vs. Swiss-Prot
Match: sp|Q9FHW2|SWC6_ARATH (SWR1 complex subunit 6 OS=Arabidopsis thaliana OX=3702 GN=SWC6 PE=1 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 1.4e-60
Identity = 124/173 (71.68%), Postives = 148/173 (85.55%), Query Frame = 0


Query: 1   MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGVEVVENIDDE 60
           M+++ +N  RR+S+RTRKVA KM AAL S+DNRTQAA+ARLEALENDN  +EV++  DDE
Sbjct: 1   MEEEMSN--RRVSNRTRKVATKMAAALTSNDNRTQAAIARLEALENDNGAIEVIDLNDDE 60

Query: 61  DASLD-DDDQAYI-KRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYL 120
           +ASLD DDD  Y+ K+Q KG+KRKTRQAKALEA+KAPK+F+ELL EANLESLP HVP+YL
Sbjct: 61  EASLDEDDDLGYLQKKQHKGSKRKTRQAKALEARKAPKSFLELLQEANLESLPSHVPTYL 120

Query: 121 KAAVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA 172
           KAAVGPPSS+SRR+FC+VCG+ A Y C  CG+RFCS RCQNIH DTRC KFVA
Sbjct: 121 KAAVGPPSSSSRRYFCSVCGYIAGYNCCLCGMRFCSIRCQNIHKDTRCQKFVA 171

[Close]

BLAST of CsGy6G013440 vs. Swiss-Prot
Match: sp|Q8R331|ZNHI1_MOUSE (Zinc finger HIT domain-containing protein 1 OS=Mus musculus OX=10090 GN=Znhit1 PE=2 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.3e-13
Identity = 56/141 (39.72%), Postives = 70/141 (49.65%), Query Frame = 0


Query: 40  RLEALENDNAGVEVVENIDDEDASL-----------DDDDQAYIKRQSKGTKRKTRQAKA 99
           +LEALENDN         DD  A L           DD D    K++++G   K R    
Sbjct: 31  QLEALENDNFQ-------DDPHAGLPQLGKRLPQFDDDADTGKKKKKTRGDHFKLR---- 90

Query: 100 LEAKKAPKTFMELLHEANLESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFAASYTCIRC 159
                  K F  LL E NL +     P+YL A  GPP S  +R FC VCGF + YTC+ C
Sbjct: 91  -----FRKNFQALLEEQNLSA--SEGPNYLTACAGPP-SRPQRPFCAVCGFPSPYTCVSC 150

Query: 160 GIRFCSSRCQNIHNDTRCLKF 170
           G R+C+ RC   H +TRCLK+
Sbjct: 151 GARYCTVRCLGTHQETRCLKW 152

[Close]

BLAST of CsGy6G013440 vs. Swiss-Prot
Match: sp|Q54NW0|ZNHI1_DICDI (Zinc finger HIT domain-containing protein 1 homolog OS=Dictyostelium discoideum OX=44689 GN=znhit1 PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.4e-12
Identity = 33/77 (42.86%), Postives = 49/77 (63.64%), Query Frame = 0


Query: 90  EAKKAPKTFMELLHEANLESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFAASYTCIRCG 149
           E K     F ++L ++ LE+ P HVP+Y+ +    PS    RHFC++CG+  +YTC +C 
Sbjct: 96  EKKSMNLNFNDVLEKSYLETFPDHVPTYI-SVQSKPSIFPPRHFCSICGYIGAYTCKQCS 155

Query: 150 IRFCSSRCQNIHNDTRC 167
            R+CS +C N HN+TRC
Sbjct: 156 SRYCSIKCFNYHNETRC 171

[Close]

BLAST of CsGy6G013440 vs. Swiss-Prot
Match: sp|Q24JY4|ZNHI1_BOVIN (Zinc finger HIT domain-containing protein 1 OS=Bos taurus OX=9913 GN=ZNHIT1 PE=2 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.9e-12
Identity = 61/171 (35.67%), Postives = 80/171 (46.78%), Query Frame = 0


Query: 10  RRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGVEVVENIDDEDASL----- 69
           ++ S R++    + V   A+   R      +LEALENDN         DD  A L     
Sbjct: 4   KKTSVRSQDPGQRRVLDRAARQRRIN---RQLEALENDNFQ-------DDPHAGLPQLGK 63

Query: 70  ------DDDDQAYIKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYL 129
                 DD D    K++++G   K R           K F  LL E NL       P+YL
Sbjct: 64  RLPQFDDDADTGKKKKKTRGDHFKLR---------FRKNFQALLEEQNLS--VAEGPNYL 123

Query: 130 KAAVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKF 170
            A  GPP S  +R FC VCGF + YTC+ CG R+C+ RC   H +TRCLK+
Sbjct: 124 TACAGPP-SRPQRPFCAVCGFPSPYTCVSCGARYCTVRCLGTHQETRCLKW 152

[Close]

BLAST of CsGy6G013440 vs. Swiss-Prot
Match: sp|O43257|ZNHI1_HUMAN (Zinc finger HIT domain-containing protein 1 OS=Homo sapiens OX=9606 GN=ZNHIT1 PE=1 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.9e-12
Identity = 61/171 (35.67%), Postives = 80/171 (46.78%), Query Frame = 0


Query: 10  RRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGVEVVENIDDEDASL----- 69
           ++ S R++    + V   A+   R      +LEALENDN         DD  A L     
Sbjct: 4   KKTSVRSQDPGQRRVLDRAARQRRIN---RQLEALENDNFQ-------DDPHAGLPQLGK 63

Query: 70  ------DDDDQAYIKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYL 129
                 DD D    K++++G   K R           K F  LL E NL       P+YL
Sbjct: 64  RLPQFDDDADTGKKKKKTRGDHFKLR---------FRKNFQALLEEQNLS--VAEGPNYL 123

Query: 130 KAAVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKF 170
            A  GPP S  +R FC VCGF + YTC+ CG R+C+ RC   H +TRCLK+
Sbjct: 124 TACAGPP-SRPQRPFCAVCGFPSPYTCVSCGARYCTVRCLGTHQETRCLKW 152

[Close]

BLAST of CsGy6G013440 vs. TrEMBL
Match: tr|A0A0A0KH15|A0A0A0KH15_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G181510 PE=4 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 1.7e-87
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGVEVVENIDDE 60
           MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGVEVVENIDDE
Sbjct: 1   MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGVEVVENIDDE 60

Query: 61  DASLDDDDQAYIKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLKA 120
           DASLDDDDQAYIKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLKA
Sbjct: 61  DASLDDDDQAYIKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLKA 120

Query: 121 AVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA 172
           AVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA
Sbjct: 121 AVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA 171

[Close]

BLAST of CsGy6G013440 vs. TrEMBL
Match: tr|A0A1S3CKL9|A0A1S3CKL9_CUCME (SWR1 complex subunit 6 OS=Cucumis melo OX=3656 GN=LOC103501880 PE=4 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 1.1e-86
Identity = 169/171 (98.83%), Postives = 170/171 (99.42%), Query Frame = 0


Query: 1   MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGVEVVENIDDE 60
           MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAG+EVVENIDDE
Sbjct: 1   MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEVVENIDDE 60

Query: 61  DASLDDDDQAYIKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLKA 120
           DASLDDDDQAYIKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSY KA
Sbjct: 61  DASLDDDDQAYIKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYFKA 120

Query: 121 AVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA 172
           AVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA
Sbjct: 121 AVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA 171

[Close]

BLAST of CsGy6G013440 vs. TrEMBL
Match: tr|M5W0H1|M5W0H1_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G048500 PE=4 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 2.2e-74
Identity = 147/172 (85.47%), Postives = 161/172 (93.60%), Query Frame = 0


Query: 1   MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGVEVVENIDDE 60
           MDDD +NP RRMSSRTRKVA KM AAL SSDNRTQAALARLEALENDNAG+E+VE  DD+
Sbjct: 1   MDDDVSNPMRRMSSRTRKVASKMTAALQSSDNRTQAALARLEALENDNAGLEMVEANDDD 60

Query: 61  DASLDDDDQAYI-KRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLK 120
           +ASLDDDDQ YI K+ SKGTKRKTRQAKALEA+KAP+TF+EL+HEANL+SLPPHVPSYLK
Sbjct: 61  EASLDDDDQVYIQKKHSKGTKRKTRQAKALEARKAPRTFLELVHEANLDSLPPHVPSYLK 120

Query: 121 AAVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA 172
           AAVGPPSSTSRRHFCTVCG AA+YTC+RCG+RFCSSRCQNIHNDTRCLKFVA
Sbjct: 121 AAVGPPSSTSRRHFCTVCGSAANYTCVRCGVRFCSSRCQNIHNDTRCLKFVA 172

[Close]

BLAST of CsGy6G013440 vs. TrEMBL
Match: tr|A0A061GYM4|A0A061GYM4_THECC (HIT-type Zinc finger family protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_042228 PE=4 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 4.9e-74
Identity = 143/172 (83.14%), Postives = 163/172 (94.77%), Query Frame = 0


Query: 1   MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGVEVVENIDDE 60
           MDD+++NPFRRMSSRTRKVAPKM AALASSDNRTQAALARLEALENDNAG+E +E  DD+
Sbjct: 1   MDDENSNPFRRMSSRTRKVAPKMAAALASSDNRTQAALARLEALENDNAGIETIEPNDDD 60

Query: 61  DASLDDDDQAYIKRQSKGTKRKTRQAKALE-AKKAPKTFMELLHEANLESLPPHVPSYLK 120
           +ASLDDDDQAY++++SKGTKRKTRQAKALE A+KAP+TF+ELLHEANLESLP HVPSYL+
Sbjct: 61  EASLDDDDQAYMQKRSKGTKRKTRQAKALENARKAPRTFLELLHEANLESLPAHVPSYLR 120

Query: 121 AAVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA 172
           AAVGPPSSTSRRHFC+VCGF A+YTC+ CG+RFCS RCQNIHNDTRC+KFVA
Sbjct: 121 AAVGPPSSTSRRHFCSVCGFTANYTCVTCGMRFCSGRCQNIHNDTRCMKFVA 172

[Close]

BLAST of CsGy6G013440 vs. TrEMBL
Match: tr|A0A1S2Y6X1|A0A1S2Y6X1_CICAR (SWR1 complex subunit 6-like OS=Cicer arietinum OX=3827 GN=LOC101491360 PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 1.9e-73
Identity = 146/173 (84.39%), Postives = 163/173 (94.22%), Query Frame = 0


Query: 1   MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGVEVVE-NIDD 60
           M+++ +N  RRMSSRTRKVA KMVAALASSDNRTQAALARL+ALENDNAG EVV+ NIDD
Sbjct: 1   MEEEGSNSVRRMSSRTRKVASKMVAALASSDNRTQAALARLDALENDNAGFEVVDPNIDD 60

Query: 61  EDASLDDDDQAYI-KRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYL 120
           ++ASLDDDDQ Y+ K+QSKGTKRKTRQAKALEAKKAPKTF+ELLH+ANLESLPPHVPSY 
Sbjct: 61  DEASLDDDDQGYMQKKQSKGTKRKTRQAKALEAKKAPKTFLELLHDANLESLPPHVPSYW 120

Query: 121 KAAVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA 172
           KAAVGPPSST RRHFCTVCGF+A+YTC+RCG+RFCSSRCQN+HNDTRCLKFVA
Sbjct: 121 KAAVGPPSSTCRRHFCTVCGFSANYTCVRCGVRFCSSRCQNVHNDTRCLKFVA 173

The following BLAST results are available for this feature:

BLAST of CsGy6G013440 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143171.1	2.6e-87	100.00	PREDICTED: SWR1 complex subunit 6 [Cucumis sativus] >XP_011657114.1 PREDICTED: S...	[more]
XP_008463835.1	1.7e-86	98.83	PREDICTED: SWR1 complex subunit 6 [Cucumis melo] >XP_008463836.1 PREDICTED: SWR1...	[more]
XP_022943643.1	1.3e-81	93.60	SWR1 complex subunit 6 [Cucurbita moschata] >XP_022943644.1 SWR1 complex subunit...	[more]
XP_023512985.1	1.3e-81	93.60	SWR1 complex subunit 6 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022986949.1	2.1e-81	93.02	SWR1 complex subunit 6 [Cucurbita maxima] >XP_022986950.1 SWR1 complex subunit 6...	[more]

BLAST of CsGy6G013440 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G37055.1	7.9e-62	71.68	HIT-type Zinc finger family protein	[more]

BLAST of CsGy6G013440 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FHW2\|SWC6_ARATH	1.4e-60	71.68	SWR1 complex subunit 6 OS=Arabidopsis thaliana OX=3702 GN=SWC6 PE=1 SV=1	[more]
sp\|Q8R331\|ZNHI1_MOUSE	1.3e-13	39.72	Zinc finger HIT domain-containing protein 1 OS=Mus musculus OX=10090 GN=Znhit1 P...	[more]
sp\|Q54NW0\|ZNHI1_DICDI	1.4e-12	42.86	Zinc finger HIT domain-containing protein 1 homolog OS=Dictyostelium discoideum ...	[more]
sp\|Q24JY4\|ZNHI1_BOVIN	1.9e-12	35.67	Zinc finger HIT domain-containing protein 1 OS=Bos taurus OX=9913 GN=ZNHIT1 PE=2...	[more]
sp\|O43257\|ZNHI1_HUMAN	1.9e-12	35.67	Zinc finger HIT domain-containing protein 1 OS=Homo sapiens OX=9606 GN=ZNHIT1 PE...	[more]

BLAST of CsGy6G013440 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KH15\|A0A0A0KH15_CUCSA	1.7e-87	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G181510 PE=4 SV=1	[more]
tr\|A0A1S3CKL9\|A0A1S3CKL9_CUCME	1.1e-86	98.83	SWR1 complex subunit 6 OS=Cucumis melo OX=3656 GN=LOC103501880 PE=4 SV=1	[more]
tr\|M5W0H1\|M5W0H1_PRUPE	2.2e-74	85.47	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G048500 PE=4 SV=1	[more]
tr\|A0A061GYM4\|A0A061GYM4_THECC	4.9e-74	83.14	HIT-type Zinc finger family protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_...	[more]
tr\|A0A1S2Y6X1\|A0A1S2Y6X1_CICAR	1.9e-73	84.39	SWR1 complex subunit 6-like OS=Cicer arietinum OX=3827 GN=LOC101491360 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007529	Znf_HIT

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G013440.1	CsGy6G013440.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 27..47
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..88
None	No IPR available	PANTHER	PTHR13093	ZINC FINGER HIT DOMAIN CONTAINING PROTEIN 1	coord: 4..170
None	No IPR available	SUPERFAMILY	SSF144232	HIT/MYND zinc finger-like	coord: 129..163
IPR007529	Zinc finger, HIT-type	PFAM	PF04438	zf-HIT	coord: 130..158 e-value: 1.0E-10 score: 41.1
IPR007529	Zinc finger, HIT-type	PROSITE	PS51083	ZF_HIT	coord: 134..166 score: 9.361

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy6G013440	Cla013393	Watermelon (97103) v1	cgybwmB479
CsGy6G013440	Csa6G181510	Cucumber (Chinese Long) v2	cgybcuB282
CsGy6G013440	MELO3C025697	Melon (DHL92) v3.5.1	cgybmeB375
CsGy6G013440	ClCG02G019260	Watermelon (Charleston Gray)	cgybwcgB402
CsGy6G013440	CSPI06G13460	Wild cucumber (PI 183967)	cgybcpiB288
CsGy6G013440	CmaCh20G003250	Cucurbita maxima (Rimu)	cgybcmaB789
CsGy6G013440	CmoCh20G003510	Cucurbita moschata (Rifu)	cgybcmoB768
CsGy6G013440	Lsi10G014610	Bottle gourd (USVL1VR-Ls)	cgyblsiB378
CsGy6G013440	Cp4.1LG16g06770	Cucurbita pepo (Zucchini)	cgybcpeB767
CsGy6G013440	MELO3C025697.2	Melon (DHL92) v3.6.1	cgybmedB376
CsGy6G013440	CsaV3_6G015890	Cucumber (Chinese Long) v3	cgybcucB298
CsGy6G013440	Cla97C02G045250	Watermelon (97103) v2	cgybwmbB407
CsGy6G013440	Bhi10G000661	Wax gourd	cgybwgoB578
CsGy6G013440	Carg03381	Silver-seed gourd	carcgybB0350

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy6G013440	Cucurbita maxima (Rimu)	cgybcmaB709
CsGy6G013440	Cucurbita maxima (Rimu)	cgybcmaB808
CsGy6G013440	Cucurbita moschata (Rifu)	cgybcmoB788
CsGy6G013440	Cucurbita pepo (Zucchini)	cgybcpeB839
CsGy6G013440	Cucurbita pepo (Zucchini)	cgybcpeB855
CsGy6G013440	Silver-seed gourd	carcgybB0399
CsGy6G013440	Silver-seed gourd	carcgybB0520
CsGy6G013440	Watermelon (97103) v2	cgybwmbB409
CsGy6G013440	Wax gourd	cgybwgoB580