Cp4.1LG16g06770 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG16g06770
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	HIT zinc finger protein
Location	Cp4.1LG16 : 7031025 .. 7035050 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGCTCCGGCACCCGGCAGTAGCACGGGAGAATCCGTCAAGCTCAGGAGGGATAGCGCCGTCGAATAAAACACCACCGGAATGTTCATTTCCGCCGCCGCTTGCCGGCGCTATCTATCCTGAGTTTCATGGCTTCTTCTTGCTTTTTCCAGCTCGGTTTTTTTACAGGTATTTTTTTTTTTTATCTTTCTTTTCCATGGCTGTAAAAAATATACGGTGAAATTTTTTTTACAAAAAGATTTAATTCATGCCATTAGAGGACACGTGTACGGTCGGATGGAGAGGAGTGGAATGGAGAAGGATAAATAGAAATGTTAGATAATGTTGAAATATCGACTAAATGAAAATTAATTATGAATAATAAATTATATCTGTCGAATTATTTTTAAAAAATATTATACATCATGAATATAAATTAATTGATTTTAAATTTCACGAGTAATTTGAATTAAATAATTAACTGTTTTATTAAAAATAGACAAAGATTTACATTGAATTAATTTTAATGAATAATTAATTAATGGAGAATTAGTTATATTAATATATTTTTAATAATTTAAATAGAAATGAAGTATTTAATACATTATTTTAATTTATTTTATTATAATTTTGTCAATTATTAATTCAATGAAATATGTTTTGAAAAGTTCAGTCAATTGGATAACATTAACAATTACAATATTAAACATATAAAGAAAGTAATAAAAGCAATTTTTTGTTTGATAACATTTAATAATACAATTTTTTTATTTTATTTTATAAATTAAATTAAAACTTAGTTCTTCAATTTTTTAAACATATCCAATAAAAATAAATAAATTAAATAATTTATTTAACGAATTATGTGCTTAAAAAATTGAATCATTCTAATTTATTGAATATAAAATTAAAAGTTTATGACGTAATAAACACTTTTAAAAATTAAAATTTTAAAAGATTAAATTTGTAATTTCATATTATTATAATTATTAATTTAATATGGAATCGATTTACCCATTGTACCCTTCATATTTTGATGGGCCCTCCCTATTAATGGGTCGTTCTGGCCCATTAGACGCTTCCCAGTTAATGGGCCTGGGCCTGCGGAGCCCCGACTTCCTCCTTTTCCCGGACCTTGTTTTCACTAGTTAATTGTTTATGTTTTTATTTAATTTTTATAATAAAAATGTTTAAATGGTTTTAATTTTTTATTATTTAATTAAATAAAAAAATCAATAATAGTAGTTTCAAGGTAAATTTATATATAATTTTAATATACTTACCATTTTTAATTAAAAATAATTGAAATAATAATAATAATAATTTCATGATTTTTTAAAGTAAAATTTATAAATATATTTTTAACGTATATTAGTAATTTGCCTAATAAAAATTTATTATTATTATTTTTTCTATGATTTTTATTCGAAACAGAAAATTAAAGTCACCAATATATTTTTAGTATAAATAGTCAAAAATATAATAAGAGCGGTAATCAGTGTTAGTGTTCGCCTGTTAACTCCACGGTGGATTTGGTTCTCGGAATGTCGTCGGCGTAAAATTCCTGCATAAGTAACGACTGTCGCCGGTGTTGAGAACGGTGAACATCCACCGAAAGTCAATCGACTCGCATTACGCCTTTCCTCTTCTTCTCCGGGTGGTAGGGTTTGGAACTCTCTCTCTCTTTCGCTCATTTCTGATTCGTTGTCACAGTGTACATTACGATCGAGTTGATACCGTCATTCGAAACAGTGCTTTTGACCAATTTCGTAGGGCTGGAATTAAGGATCATGCGAAACCTAGAGTTTTTTCTTACTACAACTCGTCTAATGCGATTTTGTACTGTATTAGTTCTGATGTGAATTCTTCACCTGTTTCATCGCGCTCTCTAAATTTCAATCGCTTCGTTTTCTCATACAAGGATCTCAGTGTGCGTTTGTAGGTAGAAATGGATGATGATGCTACAAATTCATTCCGACGCATGTCGAGTCGCACTCGGAAGGTTGCTCCTAAGATGGTTGCTGCCCTAGCGAGCAGCGACAATCGTTCCCAGGTTTGTCGAACTAGATTTTGCTTCATCGTTGTGAGTTATTTGTGGTATAATTGATTAGTAGAAGCCTGGACTCTATAGCTACAATCTAAGTTTTAGTATTGGATGTTCTTCTCCTCCAGGCTGCCCTTGCTCGTCTCGAGGCGTTGGAAAATGACAACGCTGGACTGGAATTGATCGAAAACATTGACGACGAGGATGCCTCTCTCGATGATGACGAACAAGGTTAATATGATGTTATTCATTCATATGTTTACATCTATCTAATGTTAGGCATCTAATATTTTCCCATTCCTTTCTGTACTGCTTATTTCCATGATTCCATCATTTAATTCAATGTGAAAGTAAGTCAGCAAGGTCAGTGACCGCTTTCTTCACTCCCGAGTGGCATTGCTTTTGGTAGTTCGATTCTTGTTATTTATAATTCCAGATATTGCTTAGGCTTTAGACTGTAGTGTATGCTCGAGAATTTTTCATTTTCTCCATCTTTAGAATGGCTATATTTCTGTTATGTATTGGTAGATGGCCATTAACGAAATTCAGATATTGCTTTTCCTTTGGAATTTTAGTACTCAGTTAATTGTCCTAGTACTTGCAATGGTACTTGAATTACTAATCAGTCACCGAGGTTGAGATATTCTAGGCTCATTCATGTAGATTTTTCTAGGGATCTTACAATTCCTGACTATTGGGACGATAATGGAGAGGGTTGGAATCTGCATTGAATAATGCAGTTCTCCGAACTAGAATTTGGTGGTTGGGTCAACTTACTTCCTTCCTACAAATTCTTGCCGATCTAATTAGCAAGAGGATAGGTGGAGAAGTAATTTAAAAGACTGGTGATATGATTCTCTTAAGTTTTGGACAAGTTCTGCTGATAACCGGTTTTCTTATTAGTCTGAACTGGTGGCTTTTGTGTACGAGTGGTGCTGAAAAGACCAAGATCATGTTTTTCTAAGCGGTGAGAAGCTTATAAATGTGGAACGGGAGTGTGTTTGAGTTGGTGTCTTTCTCAAAATTCTAGGACAATATCACTAAGGCAGCTGTTGCATAGTTGCTTATTTTGGTGAAGAGCCAAGCTGGTGTGGGCTAATTGTCGTCGACTTTGGGAAGGAATAAAGCCATAGGATTTCCAGTGGGAAGTGTCGCGATTTTAAGAGATTTGAGATTTCATCATTTTCTTGGTATCATCCTGATGAACTCATTTCCATTTATTTGGAACTCTTGTCCCTTTCTTTCTTTCTTTCTTCTTTCTTCTTTCTTCTTCTTCTTTTTTTTTTCTTTTTTTTTCTTTGTTGTTGTTGTTGGCTCCATAGGCTTCAAAGTGGGTTAATACATCATTTCCTTCTGGACCTCCATTTTGTGCTCTTTTGTGTTTCAATGGGTTTAGTTCCCTATAGAAAAATCACTTAAATAAAATAAACTTCCAAGGAATAATTGAACCTGTCCACTTAAATTCTGTTTTCTTGCGTCTATAATATACTTGCATTGATCTAGTGAATTGAAATTATATTTTTCTATACCCTCGAGTGTTGTTTGGAGTATAGTGTCACTAATATTTTCCCCTTTTTGGCCTCCCAAGCACAGCATACATACAGAAGCGGCAATCAAAAGGCACCAAGCGCAAAACTAGGCAGGCAAAAGCACTTGAAGCTAAGAAGGCTCCCAAAACTTTTATGGAGCTTCTGCACGAGGTTAGGATGAAACATCTTCTACTTCTTGGTCGTTATCAGATTACAGTAAAAAGTTTGTTTTAATGTTGAGCTACAATATGTGCACAAAAAAAAACAGGCAAGTTTGGAGTCTTTGCCTCCACATGTTCCATCGTACTTAAAGGCAGCCGTCGGACCTCCAAGCTCTACCTCCCGCCGGCATTTCTGCACGGTTTGTGGTTTTGCTGCTAGCTACACGTGCATAAGGTGTGGAGTACGATTTTGTTCATGTCGTTGCCAGAATATACATAATGATACTCGTTGCTTGAAATTTGTTGCCTGA

mRNA sequence

ATGGTGCTCCGGCACCCGGCAGTAGCACGGGAGAATCCGTCAAGCTCAGGAGGGATAGCGCCGTCGAATAAAACACCACCGGAATGTTCATTTCCGCCGCCGCTTGCCGGCGCTATCTATCCTGAGTTTCATGGCTTCTTCTTGCTTTTTCCAGCTCGGTTTTTTTACAGTGTACATTACGATCGAGTTGATACCGTCATTCGAAACAGTGCTTTTGACCAATTTCGTAGGGCTGGAATTAAGGATCATGCGAAACCTAGAGTTTTTTCTTACTACAACTCGTCTAATGCGATTTTGTACTGTATTAGTTCTGATGTAGAAATGGATGATGATGCTACAAATTCATTCCGACGCATGTCGAGTCGCACTCGGAAGGTTGCTCCTAAGATGGTTGCTGCCCTAGCGAGCAGCGACAATCGTTCCCAGGCTGCCCTTGCTCGTCTCGAGGCGTTGGAAAATGACAACGCTGGACTGGAATTGATCGAAAACATTGACGACGAGGATGCCTCTCTCGATGATGACGAACAAGCATACATACAGAAGCGGCAATCAAAAGGCACCAAGCGCAAAACTAGGCAGGCAAAAGCACTTGAAGCTAAGAAGGCTCCCAAAACTTTTATGGAGCTTCTGCACGAGAATATACATAATGATACTCGTTGCTTGAAATTTGTTGCCTGA

Coding sequence (CDS)

ATGGTGCTCCGGCACCCGGCAGTAGCACGGGAGAATCCGTCAAGCTCAGGAGGGATAGCGCCGTCGAATAAAACACCACCGGAATGTTCATTTCCGCCGCCGCTTGCCGGCGCTATCTATCCTGAGTTTCATGGCTTCTTCTTGCTTTTTCCAGCTCGGTTTTTTTACAGTGTACATTACGATCGAGTTGATACCGTCATTCGAAACAGTGCTTTTGACCAATTTCGTAGGGCTGGAATTAAGGATCATGCGAAACCTAGAGTTTTTTCTTACTACAACTCGTCTAATGCGATTTTGTACTGTATTAGTTCTGATGTAGAAATGGATGATGATGCTACAAATTCATTCCGACGCATGTCGAGTCGCACTCGGAAGGTTGCTCCTAAGATGGTTGCTGCCCTAGCGAGCAGCGACAATCGTTCCCAGGCTGCCCTTGCTCGTCTCGAGGCGTTGGAAAATGACAACGCTGGACTGGAATTGATCGAAAACATTGACGACGAGGATGCCTCTCTCGATGATGACGAACAAGCATACATACAGAAGCGGCAATCAAAAGGCACCAAGCGCAAAACTAGGCAGGCAAAAGCACTTGAAGCTAAGAAGGCTCCCAAAACTTTTATGGAGCTTCTGCACGAGAATATACATAATGATACTCGTTGCTTGAAATTTGTTGCCTGA

Protein sequence

MVLRHPAVARENPSSSGGIAPSNKTPPECSFPPPLAGAIYPEFHGFFLLFPARFFYSVHYDRVDTVIRNSAFDQFRRAGIKDHAKPRVFSYYNSSNAILYCISSDVEMDDDATNSFRRMSSRTRKVAPKMVAALASSDNRSQAALARLEALENDNAGLELIENIDDEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHENIHNDTRCLKFVA

Homology

[Close]

BLAST of Cp4.1LG16g06770 vs. Swiss-Prot
Match: SWC6_ARATH (SWR1 complex subunit 6 OS=Arabidopsis thaliana GN=SWC6 PE=1 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.6e-27
Identity = 71/106 (66.98%), Postives = 91/106 (85.85%), Query Frame = 1


Query: 108 MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRSQAALARLEALENDNAGLELIENIDDE 167
           M+++ +N  RR+S+RTRKVA KM AAL S+DNR+QAA+ARLEALENDN  +E+I+  DDE
Sbjct: 1   MEEEMSN--RRVSNRTRKVATKMAAALTSNDNRTQAAIARLEALENDNGAIEVIDLNDDE 60

Query: 168 DASLD-DDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHE 213
           +ASLD DD+  Y+QK+Q KG+KRKTRQAKALEA+KAPK+F+ELL E
Sbjct: 61  EASLDEDDDLGYLQKKQHKGSKRKTRQAKALEARKAPKSFLELLQE 104

[Close]

BLAST of Cp4.1LG16g06770 vs. TrEMBL
Match: A0A0A0KH15_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G181510 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 5.1e-41
Identity = 97/105 (92.38%), Postives = 103/105 (98.10%), Query Frame = 1


Query: 108 MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRSQAALARLEALENDNAGLELIENIDDE 167
           MDDD+TN FRRMSSRTRKVAPKMVAALASSDNR+QAALARLEALENDNAG+E++ENIDDE
Sbjct: 1   MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGVEVVENIDDE 60

Query: 168 DASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHE 213
           DASLDDD+QAYI KRQSKGTKRKTRQAKALEAKKAPKTFMELLHE
Sbjct: 61  DASLDDDDQAYI-KRQSKGTKRKTRQAKALEAKKAPKTFMELLHE 104

[Close]

BLAST of Cp4.1LG16g06770 vs. TrEMBL
Match: M5W0H1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012384mg PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 9.3e-35
Identity = 83/105 (79.05%), Postives = 95/105 (90.48%), Query Frame = 1


Query: 108 MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRSQAALARLEALENDNAGLELIENIDDE 167
           MDDD +N  RRMSSRTRKVA KM AAL SSDNR+QAALARLEALENDNAGLE++E  DD+
Sbjct: 1   MDDDVSNPMRRMSSRTRKVASKMTAALQSSDNRTQAALARLEALENDNAGLEMVEANDDD 60

Query: 168 DASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHE 213
           +ASLDDD+Q YIQK+ SKGTKRKTRQAKALEA+KAP+TF+EL+HE
Sbjct: 61  EASLDDDDQVYIQKKHSKGTKRKTRQAKALEARKAPRTFLELVHE 105

[Close]

BLAST of Cp4.1LG16g06770 vs. TrEMBL
Match: A0A061GYM4_THECC (HIT-type Zinc finger family protein isoform 1 OS=Theobroma cacao GN=TCM_042228 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 6.0e-34
Identity = 87/106 (82.08%), Postives = 98/106 (92.45%), Query Frame = 1


Query: 108 MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRSQAALARLEALENDNAGLELIENIDDE 167
           MDD+ +N FRRMSSRTRKVAPKM AALASSDNR+QAALARLEALENDNAG+E IE  DD+
Sbjct: 1   MDDENSNPFRRMSSRTRKVAPKMAAALASSDNRTQAALARLEALENDNAGIETIEPNDDD 60

Query: 168 DASLDDDEQAYIQKRQSKGTKRKTRQAKALE-AKKAPKTFMELLHE 213
           +ASLDDD+QAY+QKR SKGTKRKTRQAKALE A+KAP+TF+ELLHE
Sbjct: 61  EASLDDDDQAYMQKR-SKGTKRKTRQAKALENARKAPRTFLELLHE 105

[Close]

BLAST of Cp4.1LG16g06770 vs. TrEMBL
Match: W9RYY1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_011147 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.0e-33
Identity = 81/105 (77.14%), Postives = 95/105 (90.48%), Query Frame = 1


Query: 108 MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRSQAALARLEALENDNAGLELIENIDDE 167
           MDDDA+N  RRMSSRTRKVAPKM AALAS+DNR+QAALARLEALENDNAG+E +E  D++
Sbjct: 1   MDDDASNHLRRMSSRTRKVAPKMAAALASTDNRTQAALARLEALENDNAGIETVEINDED 60

Query: 168 DASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHE 213
           + SLDDD+Q Y+QK+QSK  KRKTRQAKALEA+KAP+TF+ELLHE
Sbjct: 61  EDSLDDDDQVYMQKKQSKSMKRKTRQAKALEARKAPRTFLELLHE 105

[Close]

BLAST of Cp4.1LG16g06770 vs. TrEMBL
Match: I1LLS8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_11G164100 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.1e-32
Identity = 81/106 (76.42%), Postives = 97/106 (91.51%), Query Frame = 1


Query: 108 MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRSQAALARLEALENDNAGLELIE-NIDD 167
           M+DD +NS RRMSSRTRKVA KM AALAS+DNR+QAALARL+ALENDNAG E+ + N DD
Sbjct: 1   MEDDGSNSTRRMSSRTRKVASKMAAALASADNRTQAALARLDALENDNAGFEIADANNDD 60

Query: 168 EDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHE 213
           +DASLD+++Q YIQK+QSKGTKRKTRQAKALEA++AP+TF+ELLHE
Sbjct: 61  DDASLDEEDQFYIQKKQSKGTKRKTRQAKALEARRAPRTFLELLHE 106

[Close]

BLAST of Cp4.1LG16g06770 vs. TAIR10
Match: AT5G37055.1 (AT5G37055.1 HIT-type Zinc finger family protein)

HSP 1 Score: 124.4 bits (311), Expect = 8.9e-29
Identity = 71/106 (66.98%), Postives = 91/106 (85.85%), Query Frame = 1


Query: 108 MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRSQAALARLEALENDNAGLELIENIDDE 167
           M+++ +N  RR+S+RTRKVA KM AAL S+DNR+QAA+ARLEALENDN  +E+I+  DDE
Sbjct: 1   MEEEMSN--RRVSNRTRKVATKMAAALTSNDNRTQAAIARLEALENDNGAIEVIDLNDDE 60

Query: 168 DASLD-DDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHE 213
           +ASLD DD+  Y+QK+Q KG+KRKTRQAKALEA+KAPK+F+ELL E
Sbjct: 61  EASLDEDDDLGYLQKKQHKGSKRKTRQAKALEARKAPKSFLELLQE 104

[Close]

BLAST of Cp4.1LG16g06770 vs. NCBI nr
Match: gi|659127686|ref|XP_008463835.1| (PREDICTED: SWR1 complex subunit 6 [Cucumis melo])

HSP 1 Score: 176.4 bits (446), Expect = 5.6e-41
Identity = 97/105 (92.38%), Postives = 103/105 (98.10%), Query Frame = 1


Query: 108 MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRSQAALARLEALENDNAGLELIENIDDE 167
           MDDD+TN FRRMSSRTRKVAPKMVAALASSDNR+QAALARLEALENDNAG+E++ENIDDE
Sbjct: 1   MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEVVENIDDE 60

Query: 168 DASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHE 213
           DASLDDD+QAYI KRQSKGTKRKTRQAKALEAKKAPKTFMELLHE
Sbjct: 61  DASLDDDDQAYI-KRQSKGTKRKTRQAKALEAKKAPKTFMELLHE 104

[Close]

BLAST of Cp4.1LG16g06770 vs. NCBI nr
Match: gi|449450842|ref|XP_004143171.1| (PREDICTED: SWR1 complex subunit 6 [Cucumis sativus])

HSP 1 Score: 176.0 bits (445), Expect = 7.3e-41
Identity = 97/105 (92.38%), Postives = 103/105 (98.10%), Query Frame = 1


Query: 108 MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRSQAALARLEALENDNAGLELIENIDDE 167
           MDDD+TN FRRMSSRTRKVAPKMVAALASSDNR+QAALARLEALENDNAG+E++ENIDDE
Sbjct: 1   MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGVEVVENIDDE 60

Query: 168 DASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHE 213
           DASLDDD+QAYI KRQSKGTKRKTRQAKALEAKKAPKTFMELLHE
Sbjct: 61  DASLDDDDQAYI-KRQSKGTKRKTRQAKALEAKKAPKTFMELLHE 104

[Close]

BLAST of Cp4.1LG16g06770 vs. NCBI nr
Match: gi|502129487|ref|XP_004500321.1| (PREDICTED: SWR1 complex subunit 6-like [Cicer arietinum])

HSP 1 Score: 155.6 bits (392), Expect = 1.0e-34
Identity = 84/106 (79.25%), Postives = 100/106 (94.34%), Query Frame = 1


Query: 108 MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRSQAALARLEALENDNAGLELIE-NIDD 167
           M+++ +NS RRMSSRTRKVA KMVAALASSDNR+QAALARL+ALENDNAG E+++ NIDD
Sbjct: 1   MEEEGSNSVRRMSSRTRKVASKMVAALASSDNRTQAALARLDALENDNAGFEVVDPNIDD 60

Query: 168 EDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHE 213
           ++ASLDDD+Q Y+QK+QSKGTKRKTRQAKALEAKKAPKTF+ELLH+
Sbjct: 61  DEASLDDDDQGYMQKKQSKGTKRKTRQAKALEAKKAPKTFLELLHD 106

[Close]

BLAST of Cp4.1LG16g06770 vs. NCBI nr
Match: gi|502129495|ref|XP_004500324.1| (PREDICTED: SWR1 complex subunit 6-like [Cicer arietinum])

HSP 1 Score: 155.6 bits (392), Expect = 1.0e-34
Identity = 84/106 (79.25%), Postives = 100/106 (94.34%), Query Frame = 1


Query: 108 MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRSQAALARLEALENDNAGLELIE-NIDD 167
           M+++ +NS RRMSSRTRKVA KMVAALASSDNR+QAALARL+ALENDNAG E+++ NIDD
Sbjct: 1   MEEEGSNSVRRMSSRTRKVASKMVAALASSDNRTQAALARLDALENDNAGFEVVDPNIDD 60

Query: 168 EDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHE 213
           ++ASLDDD+Q Y+QK+QSKGTKRKTRQAKALEAKKAPKTF+ELLH+
Sbjct: 61  DEASLDDDDQGYMQKKQSKGTKRKTRQAKALEAKKAPKTFLELLHD 106

[Close]

BLAST of Cp4.1LG16g06770 vs. NCBI nr
Match: gi|595830156|ref|XP_007206015.1| (hypothetical protein PRUPE_ppa012384mg [Prunus persica])

HSP 1 Score: 155.2 bits (391), Expect = 1.3e-34
Identity = 83/105 (79.05%), Postives = 95/105 (90.48%), Query Frame = 1


Query: 108 MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRSQAALARLEALENDNAGLELIENIDDE 167
           MDDD +N  RRMSSRTRKVA KM AAL SSDNR+QAALARLEALENDNAGLE++E  DD+
Sbjct: 1   MDDDVSNPMRRMSSRTRKVASKMTAALQSSDNRTQAALARLEALENDNAGLEMVEANDDD 60

Query: 168 DASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHE 213
           +ASLDDD+Q YIQK+ SKGTKRKTRQAKALEA+KAP+TF+EL+HE
Sbjct: 61  EASLDDDDQVYIQKKHSKGTKRKTRQAKALEARKAPRTFLELVHE 105

The following BLAST results are available for this feature:

BLAST of Cp4.1LG16g06770 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SWC6_ARATH	1.6e-27	66.98	SWR1 complex subunit 6 OS=Arabidopsis thaliana GN=SWC6 PE=1 SV=1	[more]

BLAST of Cp4.1LG16g06770 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KH15_CUCSA	5.1e-41	92.38	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G181510 PE=4 SV=1	[more]
M5W0H1_PRUPE	9.3e-35	79.05	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012384mg PE=4 SV=1	[more]
A0A061GYM4_THECC	6.0e-34	82.08	HIT-type Zinc finger family protein isoform 1 OS=Theobroma cacao GN=TCM_042228 P...	[more]
W9RYY1_9ROSA	1.0e-33	77.14	Uncharacterized protein OS=Morus notabilis GN=L484_011147 PE=4 SV=1	[more]
I1LLS8_SOYBN	1.1e-32	76.42	Uncharacterized protein OS=Glycine max GN=GLYMA_11G164100 PE=4 SV=1	[more]

BLAST of Cp4.1LG16g06770 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G37055.1	8.9e-29	66.98	HIT-type Zinc finger family protein	[more]

BLAST of Cp4.1LG16g06770 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659127686\|ref\|XP_008463835.1\|	5.6e-41	92.38	PREDICTED: SWR1 complex subunit 6 [Cucumis melo]	[more]
gi\|449450842\|ref\|XP_004143171.1\|	7.3e-41	92.38	PREDICTED: SWR1 complex subunit 6 [Cucumis sativus]	[more]
gi\|502129487\|ref\|XP_004500321.1\|	1.0e-34	79.25	PREDICTED: SWR1 complex subunit 6-like [Cicer arietinum]	[more]
gi\|502129495\|ref\|XP_004500324.1\|	1.0e-34	79.25	PREDICTED: SWR1 complex subunit 6-like [Cicer arietinum]	[more]
gi\|595830156\|ref\|XP_007206015.1\|	1.3e-34	79.05	hypothetical protein PRUPE_ppa012384mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006338	chromatin remodeling
biological_process	GO:0042742	defense response to bacterium
biological_process	GO:0048638	regulation of developmental growth
biological_process	GO:0009909	regulation of flower development
biological_process	GO:0008150	biological_process
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0042802	identical protein binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG16g06770.1	Cp4.1LG16g06770.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 134..161 scor
None	No IPR available	PANTHER	PTHR13093	ZINC FINGER HIT DOMAIN CONTAINING PROTEIN 1	coord: 77..221 score: 6.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG16g06770	Cucsa.139510	Cucumber (Gy14) v1	cgycpeB0374
Cp4.1LG16g06770	CmaCh20G003250	Cucurbita maxima (Rimu)	cmacpeB564
Cp4.1LG16g06770	CmoCh20G003510	Cucurbita moschata (Rifu)	cmocpeB517
Cp4.1LG16g06770	Cla013393	Watermelon (97103) v1	cpewmB303
Cp4.1LG16g06770	Csa6G181510	Cucumber (Chinese Long) v2	cpecuB290
Cp4.1LG16g06770	MELO3C025697	Melon (DHL92) v3.5.1	cpemeB267
Cp4.1LG16g06770	ClCG02G019260	Watermelon (Charleston Gray)	cpewcgB266
Cp4.1LG16g06770	CSPI06G13460	Wild cucumber (PI 183967)	cpecpiB292
Cp4.1LG16g06770	Lsi10G014610	Bottle gourd (USVL1VR-Ls)	cpelsiB219
Cp4.1LG16g06770	MELO3C025697.2	Melon (DHL92) v3.6.1	cpemedB301
Cp4.1LG16g06770	CsaV3_6G015890	Cucumber (Chinese Long) v3	cpecucB0359
Cp4.1LG16g06770	Bhi10G000661	Wax gourd	cpewgoB0353
Cp4.1LG16g06770	CsGy6G013440	Cucumber (Gy14) v2	cgybcpeB767
Cp4.1LG16g06770	Carg03381	Silver-seed gourd	carcpeB0465

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG16g06770	Cucurbita pepo (Zucchini)	cpecpeB308
Cp4.1LG16g06770	Cucurbita maxima (Rimu)	cmacpeB625
Cp4.1LG16g06770	Cucurbita moschata (Rifu)	cmocpeB574
Cp4.1LG16g06770	Melon (DHL92) v3.5.1	cpemeB247
Cp4.1LG16g06770	Melon (DHL92) v3.6.1	cpemedB292
Cp4.1LG16g06770	Silver-seed gourd	carcpeB0727