CsGy6G008550 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy6G008550
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	GTPase IMAP family member 6
Location	Chr6 : 7131021 .. 7132718 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTGAATGTGAATTTGATGTTAGTAGGTCGGACAGGAGATGGAAAGAGTGCAAGTGGGAACACTATTCTTGGAAGGAAGGCATTCAAGTCAAGGCTAAGTTCATCAACGGTTACAAAAGTTTCTGAGTTACAAAATGGTGTGTGGGAAGGGGGCCAAATCATAAGTGTCATCGACACCCCTGGTACGTAACCAAAACATATTATTGGTCGTTTAGGCTCTATTTGATAGCTATATATTTGCTTTAATTTTGAAAATAATTATGCTTATAAACAATATTACTACTTACGCCTATAAATTAAATTTCTTTGTTTCGTTGTTTTAAAAATAAAGCTACGTTTTGAAAACTAAAAAAAGTTGATACCGTTCGATAACCATTTTGTTTTTTGAAAATGGTGTCTTGTTTCTCGCCATATCTAAATAATTCCAATGTAAAAGGAATAGTTGAAATGTGGTAATTACAAATGAGTTTAGAGTCAAGTGCACCAAGAAGTAGTCAGTGTGAGAGGATACTCTCCAAAGAGGTCTAGCTAGAATCTTGTTTGTTTTCCTCGAAGATTATGATGTTGGTTTTGCTTGAGCCAAATTAATCGAACACTACAACTTTGGGTTTTATTTTGACAACCAAAATTGTATAGTAGTGAACTTTGGTCCAAGAATTAATGGTTTGCTTAAGGAATTAAGATGAAAATTATGGTAAAAAAAATTATTTAAAAATTTTCCTAACTACAAATTTGGTTTTTATTAATGCAAAAGTTTTTTTTGTTCCATTGATGCTGTCAAAAAAACCATTAATAAAACTTTGAATTGTTTCAAATATACCAATTGAGTGAATTATTTTTATAAATATAGCAAAATTTTACAACAACATCACGATAGAAATTAGGGTTTTGCTATATTTGTAAATATTTTCAACATTTTTAATGTTCATAGTATTATCACCAAATGATCACTTAGTATTTGTAAATAACTTATTTTCTTTCTTATACAAATAACTCAGGAGTGTTTGATTTATCTATTGGAGTAGACTATGCAGCAAGGGAAATAGTGAGATGCATTGACATGACAAAGGAAGGTATTCATGCCATTGTAATTGTTTTCTCAGTTAGGAATCGATTTTCTCGAGAAGAAGAATCGATCCTTCGAACCTTACAAACATTATTCGGAACCAAAATTATGGACTACACTATTCTCCTCTTCACCGGAGGTGATGATCTCGAAGAAGACGACAACGCCCTAGAATACTACTTAACACATGATTCTCCTGATTCCTTAAAGGACATCGTAGCATCTTGCAAAAATCGTTGCGTACTTTTTGACAACAAGACTGAGTGTGAATCAAAAAAATGTGAACAAATGGGGAAGTTGATGGAGATGGTGAATGAGGTAAGGAAGGTAAATGGAGGACAACCTTACATGCATGACTTATGTTCTAGTATGACAGTTGAAACAAAGTTAAAAGAGGTTAAGACCAAACTTGAAAAACAATTGCAAGAGGATGAAAAGGAAGCAAGAATTATAGGTGAAAAGAGAGGGGAAGAGAATGTAAAGGAAAAAAATAGGAACCTTGAAAATCAATTGGCAAAAGCAAGAGAAGAAAGAGTAAATGCAGAGAATAGAACACAAGAGATTCAACGGCAATATAATGATGAAATTAGGAGGCTCAGTCACCAACTACAAAGCGCACTTCAATGA

mRNA sequence

ATGGATTTGAATGTGAATTTGATGTTAGTAGGTCGGACAGGAGATGGAAAGAGTGCAAGTGGGAACACTATTCTTGGAAGGAAGGCATTCAAGTCAAGGCTAAGTTCATCAACGGTTACAAAAGTTTCTGAGTTACAAAATGCAAGAGAAGAAAGAGTAAATGCAGAGAATAGAACACAAGAGATTCAACGGCAATATAATGATGAAATTAGGAGGCTCAGTCACCAACTACAAAGCGCACTTCAATGA

Coding sequence (CDS)

ATGGATTTGAATGTGAATTTGATGTTAGTAGGTCGGACAGGAGATGGAAAGAGTGCAAGTGGGAACACTATTCTTGGAAGGAAGGCATTCAAGTCAAGGCTAAGTTCATCAACGGTTACAAAAGTTTCTGAGTTACAAAATGCAAGAGAAGAAAGAGTAAATGCAGAGAATAGAACACAAGAGATTCAACGGCAATATAATGATGAAATTAGGAGGCTCAGTCACCAACTACAAAGCGCACTTCAATGA

Protein sequence

MDLNVNLMLVGRTGDGKSASGNTILGRKAFKSRLSSSTVTKVSELQNAREERVNAENRTQEIQRQYNDEIRRLSHQLQSALQ

Homology

[Close]

BLAST of CsGy6G008550 vs. NCBI nr
Match: XP_004140622.2 (PREDICTED: protein AIG1-like isoform X1 [Cucumis sativus] >KGN46530.1 hypothetical protein Csa_6G106820 [Cucumis sativus])

HSP 1 Score: 88.6 bits (218), Expect = 1.1e-14
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0


Query: 1  MDLNVNLMLVGRTGDGKSASGNTILGRKAFKSRLSSSTVTKVSELQN 48
          MDLNVNLMLVGRTGDGKSASGNTILGRKAFKSRLSSSTVTKVSELQN
Sbjct: 1  MDLNVNLMLVGRTGDGKSASGNTILGRKAFKSRLSSSTVTKVSELQN 47

[Close]

BLAST of CsGy6G008550 vs. NCBI nr
Match: XP_011656854.1 (PREDICTED: putative protein PHLOEM PROTEIN 2-LIKE A3 isoform X2 [Cucumis sativus])

HSP 1 Score: 88.6 bits (218), Expect = 1.1e-14
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0


Query: 1  MDLNVNLMLVGRTGDGKSASGNTILGRKAFKSRLSSSTVTKVSELQN 48
          MDLNVNLMLVGRTGDGKSASGNTILGRKAFKSRLSSSTVTKVSELQN
Sbjct: 1  MDLNVNLMLVGRTGDGKSASGNTILGRKAFKSRLSSSTVTKVSELQN 47

[Close]

BLAST of CsGy6G008550 vs. NCBI nr
Match: XP_008459752.1 (PREDICTED: protein AIG1-like [Cucumis melo])

HSP 1 Score: 79.7 bits (195), Expect = 5.0e-12
Identity = 44/49 (89.80%), Postives = 45/49 (91.84%), Query Frame = 0


Query: 3  LNVNLMLVGRTGDGKSASGNTILGRKAFKSRLSSSTVTKVSELQNAREE 52
          LNVNLMLVGRTGDGKSASGNTILGRKAFKSR SSS+VTKVSELQN   E
Sbjct: 4  LNVNLMLVGRTGDGKSASGNTILGRKAFKSRPSSSSVTKVSELQNGAWE 52

[Close]

BLAST of CsGy6G008550 vs. NCBI nr
Match: XP_004140620.2 (PREDICTED: protein AIG1-like [Cucumis sativus] >KGN46534.1 hypothetical protein Csa_6G107840 [Cucumis sativus])

HSP 1 Score: 68.2 bits (165), Expect = 1.5e-08
Identity = 39/59 (66.10%), Postives = 45/59 (76.27%), Query Frame = 0


Query: 24  ILGRKAFKSRLSSSTVTKVSELQNAREERVNAENRTQEIQRQYNDEIRRLSHQLQSALQ 83
           I+G K  +  +   +    ++L  AREERVNAENRTQEIQRQYNDEIRRLSHQLQSALQ
Sbjct: 114 IIGEKRGEENVKEKSRNLENQLAKAREERVNAENRTQEIQRQYNDEIRRLSHQLQSALQ 172

[Close]

BLAST of CsGy6G008550 vs. NCBI nr
Match: XP_023006925.1 (immune-associated nucleotide-binding protein 9-like [Cucurbita maxima])

HSP 1 Score: 63.5 bits (153), Expect = 3.7e-07
Identity = 32/43 (74.42%), Postives = 40/43 (93.02%), Query Frame = 0


Query: 5  VNLMLVGRTGDGKSASGNTILGRKAFKSRLSSSTVTKVSELQN 48
          + L+LVGRTG+GKSA+GNTILGRKAFKSR+SSS +TK SE+Q+
Sbjct: 9  LTLVLVGRTGNGKSATGNTILGRKAFKSRISSSGITKSSEMQS 51

[Close]

BLAST of CsGy6G008550 vs. TAIR10
Match: AT4G09940.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 52.4 bits (124), Expect = 1.6e-07
Identity = 27/42 (64.29%), Postives = 36/42 (85.71%), Query Frame = 0


Query: 7  LMLVGRTGDGKSASGNTILGRKAFKSRLSSSTVTKVSELQNA 49
          L+LVGR+G+GKSA+GN+ILGRKAFKS+  +S VT   ELQ++
Sbjct: 50 LLLVGRSGNGKSATGNSILGRKAFKSKGRASGVTTACELQSS 91

[Close]

BLAST of CsGy6G008550 vs. TAIR10
Match: AT1G33970.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 50.1 bits (118), Expect = 7.7e-07
Identity = 27/45 (60.00%), Postives = 34/45 (75.56%), Query Frame = 0


Query: 7  LMLVGRTGDGKSASGNTILGRKAFKSRLSSSTVTKVSELQNAREE 52
          L+LVGRTG+GKSA+GN+ILGRKAF+SR  +  VT   E Q   +E
Sbjct: 27 LVLVGRTGNGKSATGNSILGRKAFRSRARTVGVTSTCESQRVVQE 71

[Close]

BLAST of CsGy6G008550 vs. TAIR10
Match: AT2G26820.1 (phloem protein 2-A3)

HSP 1 Score: 48.1 bits (113), Expect = 2.9e-06
Identity = 23/43 (53.49%), Postives = 33/43 (76.74%), Query Frame = 0


Query: 6  NLMLVGRTGDGKSASGNTILGRKAFKSRLSSSTVTKVSELQNA 49
          N++LVGRTG+GKS++GNT+LG K FKS+  +  VT + E+  A
Sbjct: 7  NIVLVGRTGNGKSSTGNTLLGTKQFKSKNQAKGVTMICEMYRA 49

[Close]

BLAST of CsGy6G008550 vs. TAIR10
Match: AT1G33960.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 45.1 bits (105), Expect = 2.5e-05
Identity = 22/35 (62.86%), Postives = 29/35 (82.86%), Query Frame = 0


Query: 6  NLMLVGRTGDGKSASGNTILGRKAFKSRLSSSTVT 41
          N++LVGRTG+GKSA+GN+I+  K FKS+  SS VT
Sbjct: 44 NIVLVGRTGNGKSATGNSIVRSKVFKSKTKSSGVT 78

[Close]

BLAST of CsGy6G008550 vs. TAIR10
Match: AT1G33890.1 (Avirulence induced gene (AIG1) family protein)

HSP 1 Score: 42.7 bits (99), Expect = 1.2e-04
Identity = 20/43 (46.51%), Postives = 31/43 (72.09%), Query Frame = 0


Query: 6  NLMLVGRTGDGKSASGNTILGRKAFKSRLSSSTVTKVSELQNA 49
          N++LVGRTG+GKSA+GN+++G+  F S   ++ VTK  +   A
Sbjct: 15 NIVLVGRTGNGKSATGNSLIGKDVFVSEAKATGVTKTCQTYKA 57

[Close]

BLAST of CsGy6G008550 vs. Swiss-Prot
Match: sp|Q9T0F3|IAN12_ARATH (Immune-associated nucleotide-binding protein 12 OS=Arabidopsis thaliana OX=3702 GN=IAN12 PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 2.8e-06
Identity = 27/42 (64.29%), Postives = 36/42 (85.71%), Query Frame = 0


Query: 7  LMLVGRTGDGKSASGNTILGRKAFKSRLSSSTVTKVSELQNA 49
          L+LVGR+G+GKSA+GN+ILGRKAFKS+  +S VT   ELQ++
Sbjct: 50 LLLVGRSGNGKSATGNSILGRKAFKSKGRASGVTTACELQSS 91

[Close]

BLAST of CsGy6G008550 vs. Swiss-Prot
Match: sp|F4HT21|IAN9_ARATH (Immune-associated nucleotide-binding protein 9 OS=Arabidopsis thaliana OX=3702 GN=IAN9 PE=2 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 1.4e-05
Identity = 27/45 (60.00%), Postives = 34/45 (75.56%), Query Frame = 0


Query: 7  LMLVGRTGDGKSASGNTILGRKAFKSRLSSSTVTKVSELQNAREE 52
          L+LVGRTG+GKSA+GN+ILGRKAF+SR  +  VT   E Q   +E
Sbjct: 27 LVLVGRTGNGKSATGNSILGRKAFRSRARTVGVTSTCESQRVVQE 71

[Close]

BLAST of CsGy6G008550 vs. Swiss-Prot
Match: sp|Q6P9H5|GIMA6_HUMAN (GTPase IMAP family member 6 OS=Homo sapiens OX=9606 GN=GIMAP6 PE=2 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 5.3e-05
Identity = 23/40 (57.50%), Postives = 33/40 (82.50%), Query Frame = 0


Query: 5  VNLMLVGRTGDGKSASGNTILGRKAFKSRLSSSTVTKVSE 45
          + L+L+G+TG GKSA+GN+ILGR  F+S+LS+  VTK S+
Sbjct: 41 LRLILMGKTGSGKSATGNSILGRDVFESKLSTRPVTKTSQ 80

[Close]

BLAST of CsGy6G008550 vs. Swiss-Prot
Match: sp|O81025|IAN10_ARATH (Immune-associated nucleotide-binding protein 10 OS=Arabidopsis thaliana OX=3702 GN=IAN10 PE=3 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 5.3e-05
Identity = 23/43 (53.49%), Postives = 33/43 (76.74%), Query Frame = 0


Query: 6  NLMLVGRTGDGKSASGNTILGRKAFKSRLSSSTVTKVSELQNA 49
          N++LVGRTG+GKS++GNT+LG K FKS+  +  VT + E+  A
Sbjct: 7  NIVLVGRTGNGKSSTGNTLLGTKQFKSKNQAKGVTMICEMYRA 49

[Close]

BLAST of CsGy6G008550 vs. Swiss-Prot
Match: sp|Q8K349|GIMA6_MOUSE (GTPase IMAP family member 6 OS=Mus musculus OX=10090 GN=Gimap6 PE=2 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 6.9e-05
Identity = 22/36 (61.11%), Postives = 32/36 (88.89%), Query Frame = 0


Query: 5   VNLMLVGRTGDGKSASGNTILGRKAFKSRLSSSTVT 41
           + L+LVG+TG GKSA+GN+ILGR+AF+S++S+  VT
Sbjct: 104 LQLLLVGKTGSGKSATGNSILGRQAFESKISARPVT 139

[Close]

BLAST of CsGy6G008550 vs. TrEMBL
Match: tr|A0A0A0KA09|A0A0A0KA09_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G106820 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 7.2e-15
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0


Query: 1  MDLNVNLMLVGRTGDGKSASGNTILGRKAFKSRLSSSTVTKVSELQN 48
          MDLNVNLMLVGRTGDGKSASGNTILGRKAFKSRLSSSTVTKVSELQN
Sbjct: 1  MDLNVNLMLVGRTGDGKSASGNTILGRKAFKSRLSSSTVTKVSELQN 47

HSP 2 Score: 67.8 bits (164), Expect = 1.3e-08
Identity = 39/59 (66.10%), Postives = 44/59 (74.58%), Query Frame = 0


Query: 24  ILGRKAFKSRLSSSTVTKVSELQNAREERVNAENRTQEIQRQYNDEIRRLSHQLQSALQ 83
           I+G K  +  +        ++L  AREERVNAENRTQEIQRQYNDEIRRLSHQLQSALQ
Sbjct: 235 IIGEKRGEENVKEKNRNLENQLAKAREERVNAENRTQEIQRQYNDEIRRLSHQLQSALQ 293

[Close]

BLAST of CsGy6G008550 vs. TrEMBL
Match: tr|A0A1S3CAF4|A0A1S3CAF4_CUCME (protein AIG1-like OS=Cucumis melo OX=3656 GN=LOC103498793 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.3e-12
Identity = 44/49 (89.80%), Postives = 45/49 (91.84%), Query Frame = 0


Query: 3  LNVNLMLVGRTGDGKSASGNTILGRKAFKSRLSSSTVTKVSELQNAREE 52
          LNVNLMLVGRTGDGKSASGNTILGRKAFKSR SSS+VTKVSELQN   E
Sbjct: 4  LNVNLMLVGRTGDGKSASGNTILGRKAFKSRPSSSSVTKVSELQNGAWE 52

[Close]

BLAST of CsGy6G008550 vs. TrEMBL
Match: tr|A0A0A0KCJ5|A0A0A0KCJ5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G107840 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.0e-08
Identity = 39/59 (66.10%), Postives = 45/59 (76.27%), Query Frame = 0


Query: 24  ILGRKAFKSRLSSSTVTKVSELQNAREERVNAENRTQEIQRQYNDEIRRLSHQLQSALQ 83
           I+G K  +  +   +    ++L  AREERVNAENRTQEIQRQYNDEIRRLSHQLQSALQ
Sbjct: 114 IIGEKRGEENVKEKSRNLENQLAKAREERVNAENRTQEIQRQYNDEIRRLSHQLQSALQ 172

[Close]

BLAST of CsGy6G008550 vs. TrEMBL
Match: tr|A0A0S3SIZ0|A0A0S3SIZ0_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.07G165800 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 7.2e-07
Identity = 31/47 (65.96%), Postives = 42/47 (89.36%), Query Frame = 0


Query: 7  LMLVGRTGDGKSASGNTILGRKAFKSRLSSSTVTKVSELQNAREERV 54
          L+LVGRTG+GKSA+GN+I+G++AFKSRLSSS VT+V ELQ  ++E +
Sbjct: 13 LVLVGRTGNGKSATGNSIIGKRAFKSRLSSSGVTRVCELQKTKDEPI 59

[Close]

BLAST of CsGy6G008550 vs. TrEMBL
Match: tr|A0A1S3U324|A0A1S3U324_VIGRR (protein AIG1-like OS=Vigna radiata var. radiata OX=3916 GN=LOC106761388 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.6e-06
Identity = 31/40 (77.50%), Postives = 36/40 (90.00%), Query Frame = 0


Query: 7  LMLVGRTGDGKSASGNTILGRKAFKSRLSSSTVTKVSELQ 47
          L+LVGRTG+GKSA+GN ILGRKAFKS++SSS VT V ELQ
Sbjct: 13 LVLVGRTGNGKSATGNNILGRKAFKSKISSSGVTSVCELQ 52

The following BLAST results are available for this feature:

BLAST of CsGy6G008550 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140622.2	1.1e-14	100.00	PREDICTED: protein AIG1-like isoform X1 [Cucumis sativus] >KGN46530.1 hypothetic...	[more]
XP_011656854.1	1.1e-14	100.00	PREDICTED: putative protein PHLOEM PROTEIN 2-LIKE A3 isoform X2 [Cucumis sativus...	[more]
XP_008459752.1	5.0e-12	89.80	PREDICTED: protein AIG1-like [Cucumis melo]	[more]
XP_004140620.2	1.5e-08	66.10	PREDICTED: protein AIG1-like [Cucumis sativus] >KGN46534.1 hypothetical protein ...	[more]
XP_023006925.1	3.7e-07	74.42	immune-associated nucleotide-binding protein 9-like [Cucurbita maxima]	[more]

BLAST of CsGy6G008550 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G09940.1	1.6e-07	64.29	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT1G33970.1	7.7e-07	60.00	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT2G26820.1	2.9e-06	53.49	phloem protein 2-A3	[more]
AT1G33960.1	2.5e-05	62.86	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT1G33890.1	1.2e-04	46.51	Avirulence induced gene (AIG1) family protein	[more]

BLAST of CsGy6G008550 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9T0F3\|IAN12_ARATH	2.8e-06	64.29	Immune-associated nucleotide-binding protein 12 OS=Arabidopsis thaliana OX=3702 ...	[more]
sp\|F4HT21\|IAN9_ARATH	1.4e-05	60.00	Immune-associated nucleotide-binding protein 9 OS=Arabidopsis thaliana OX=3702 G...	[more]
sp\|Q6P9H5\|GIMA6_HUMAN	5.3e-05	57.50	GTPase IMAP family member 6 OS=Homo sapiens OX=9606 GN=GIMAP6 PE=2 SV=1	[more]
sp\|O81025\|IAN10_ARATH	5.3e-05	53.49	Immune-associated nucleotide-binding protein 10 OS=Arabidopsis thaliana OX=3702 ...	[more]
sp\|Q8K349\|GIMA6_MOUSE	6.9e-05	61.11	GTPase IMAP family member 6 OS=Mus musculus OX=10090 GN=Gimap6 PE=2 SV=1	[more]

BLAST of CsGy6G008550 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KA09\|A0A0A0KA09_CUCSA	7.2e-15	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G106820 PE=4 SV=1	[more]
tr\|A0A1S3CAF4\|A0A1S3CAF4_CUCME	3.3e-12	89.80	protein AIG1-like OS=Cucumis melo OX=3656 GN=LOC103498793 PE=4 SV=1	[more]
tr\|A0A0A0KCJ5\|A0A0A0KCJ5_CUCSA	1.0e-08	66.10	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G107840 PE=4 SV=1	[more]
tr\|A0A0S3SIZ0\|A0A0S3SIZ0_PHAAN	7.2e-07	65.96	Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.07G...	[more]
tr\|A0A1S3U324\|A0A1S3U324_VIGRR	3.6e-06	77.50	protein AIG1-like OS=Vigna radiata var. radiata OX=3916 GN=LOC106761388 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005525	GTP binding

Vocabulary: **INTERPRO**
Term	Definition
IPR006703	G_AIG1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005525	GTP binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G008550.1	CsGy6G008550.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 45..82
None	No IPR available	GENE3D	G3DSA:3.40.50.300		coord: 4..67 e-value: 1.6E-11 score: 46.2
None	No IPR available	PANTHER	PTHR10903	GTPASE, IMAP FAMILY MEMBER-RELATED	coord: 4..48
None	No IPR available	PANTHER	PTHR10903:SF61	SUBFAMILY NOT NAMED	coord: 4..48
IPR006703	AIG1-type guanine nucleotide-binding (G) domain	PFAM	PF04548	AIG1	coord: 6..51 e-value: 1.2E-13 score: 50.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy6G008550	Cla006699	Watermelon (97103) v1	cgybwmB509
CsGy6G008550	Csa6G106820	Cucumber (Chinese Long) v2	cgybcuB282
CsGy6G008550	MELO3C022257	Melon (DHL92) v3.5.1	cgybmeB381
CsGy6G008550	ClCG06G002710	Watermelon (Charleston Gray)	cgybwcgB438
CsGy6G008550	CSPI06G08460	Wild cucumber (PI 183967)	cgybcpiB288
CsGy6G008550	Lsi09G016680	Bottle gourd (USVL1VR-Ls)	cgyblsiB366
CsGy6G008550	MELO3C022257.2	Melon (DHL92) v3.6.1	cgybmedB385
CsGy6G008550	CsaV3_6G008830	Cucumber (Chinese Long) v3	cgybcucB298
CsGy6G008550	Cla97C06G112060	Watermelon (97103) v2	cgybwmbB446
CsGy6G008550	Bhi12G001954	Wax gourd	cgybwgoB522

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy6G008550	Cucurbita maxima (Rimu)	cgybcmaB763
CsGy6G008550	Cucurbita moschata (Rifu)	cgybcmoB744
CsGy6G008550	Cucurbita pepo (Zucchini)	cgybcpeB732
CsGy6G008550	Bottle gourd (USVL1VR-Ls)	cgyblsiB364
CsGy6G008550	Silver-seed gourd	carcgybB0888
CsGy6G008550	Wax gourd	cgybwgoB511