CSPI06G08460 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI06G08460
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	P-loop containing nucleoside triphosphate hydrolases superfamily protein
Location	Chr6 : 7127582 .. 7127985 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGATGGTGAATGAGGTAAGTAAGGTAAATGGAGGACAACCTTACATGCATGACTTATGTTCTACTATGACAGTTGAAACAAAGTTAAAAGAGGTTAAGACCAAACTTGAAAAACAATTGCAAGAGGATGAAAAGGAAGCAAGAATTATAGGTGAAAAGAGAGGGGAAGAGAATGTAAAGGAAAAAAGTAGGAACCTTGAAAATCAATTGGCAAAAGCAAGAGAAGAAAGAGTAAATGCAGAGAATAGAACACAAGAGATTCAACGGCAATATAATGATGAAATTAGGAGGCTCAGTCACCAACTACAAAGCGCACTTCAATGAAGGATTATTATGATTGTGTGTTAACTAATATGTGTGTGAATGTAATGCGTATGAATAAAAGTTATTGCATATGGCAG

mRNA sequence

ATGGGGATGGTGAATGAGGTAAGTAAGGTAAATGGAGGACAACCTTACATGCATGACTTATGTTCTACTATGACAGTTGAAACAAAGTTAAAAGAGGTTAAGACCAAACTTGAAAAACAATTGCAAGAGGATGAAAAGGAAGCAAGAATTATAGGTGAAAAGAGAGGGGAAGAGAATGTAAAGGAAAAAAGTAGGAACCTTGAAAATCAATTGGCAAAAGCAAGAGAAGAAAGAGTAAATGCAGAGAATAGAACACAAGAGATTCAACGGCAATATAATGATGAAATTAGGAGGCTCAGTCACCAACTACAAAGCGCACTTCAATGA

Coding sequence (CDS)

ATGGGGATGGTGAATGAGGTAAGTAAGGTAAATGGAGGACAACCTTACATGCATGACTTATGTTCTACTATGACAGTTGAAACAAAGTTAAAAGAGGTTAAGACCAAACTTGAAAAACAATTGCAAGAGGATGAAAAGGAAGCAAGAATTATAGGTGAAAAGAGAGGGGAAGAGAATGTAAAGGAAAAAAGTAGGAACCTTGAAAATCAATTGGCAAAAGCAAGAGAAGAAAGAGTAAATGCAGAGAATAGAACACAAGAGATTCAACGGCAATATAATGATGAAATTAGGAGGCTCAGTCACCAACTACAAAGCGCACTTCAATGA

Homology

[Close]

BLAST of CSPI06G08460 vs. TrEMBL
Match: A0A0A0KCJ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G107840 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 7.4e-46
Identity = 105/108 (97.22%), Postives = 106/108 (98.15%), Query Frame = 1


Query: 1   MGMVNEVSKVNGGQPYMHDLCSTMTVETKLKEVKTKLEKQLQEDEKEARIIGEKRGEENV 60
           M MVNEV KVNGGQPYMHDLCS+MTVETKLKEVKTKLEKQLQEDEKEARIIGEKRGEENV
Sbjct: 65  MEMVNEVRKVNGGQPYMHDLCSSMTVETKLKEVKTKLEKQLQEDEKEARIIGEKRGEENV 124

Query: 61  KEKSRNLENQLAKAREERVNAENRTQEIQRQYNDEIRRLSHQLQSALQ 109
           KEKSRNLENQLAKAREERVNAENRTQEIQRQYNDEIRRLSHQLQSALQ
Sbjct: 125 KEKSRNLENQLAKAREERVNAENRTQEIQRQYNDEIRRLSHQLQSALQ 172

[Close]

BLAST of CSPI06G08460 vs. TrEMBL
Match: A0A0A0KA09_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106820 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 1.6e-45
Identity = 104/108 (96.30%), Postives = 106/108 (98.15%), Query Frame = 1


Query: 1   MGMVNEVSKVNGGQPYMHDLCSTMTVETKLKEVKTKLEKQLQEDEKEARIIGEKRGEENV 60
           M MVNEV KVNGGQPYMHDLCS+MTVETKLKEVKTKLEKQLQEDEKEARIIGEKRGEENV
Sbjct: 186 MEMVNEVRKVNGGQPYMHDLCSSMTVETKLKEVKTKLEKQLQEDEKEARIIGEKRGEENV 245

Query: 61  KEKSRNLENQLAKAREERVNAENRTQEIQRQYNDEIRRLSHQLQSALQ 109
           KEK+RNLENQLAKAREERVNAENRTQEIQRQYNDEIRRLSHQLQSALQ
Sbjct: 246 KEKNRNLENQLAKAREERVNAENRTQEIQRQYNDEIRRLSHQLQSALQ 293

[Close]

BLAST of CSPI06G08460 vs. TrEMBL
Match: A0A0A0L9V0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G731070 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 9.8e-06
Identity = 44/106 (41.51%), Postives = 59/106 (55.66%), Query Frame = 1


Query: 3   MVNEVSKVNGGQPYMHDLCSTMTVETKLKEVKTKLEKQLQEDEKEARIIGEKRGEENVKE 62
           +V E+   NGGQPY   L S   +  +  EVKTKLE    +D      + EK  E  + E
Sbjct: 189 LVKEIIDQNGGQPYKPPLISNQKLAKEFDEVKTKLEHFCTQDFNSDPKLEEKLNEFML-E 248

Query: 63  KSRNLENQLAKAREERVNAENRTQEIQRQYNDEIRRLSHQLQSALQ 109
            S  LE QL + RE R   E RT +IQ+QYNDE ++L+  L+ +LQ
Sbjct: 249 VSNTLERQLEEEREARRQVEERTLKIQKQYNDETQKLNELLRCSLQ 293

[Close]

BLAST of CSPI06G08460 vs. NCBI nr
Match: gi|778722087|ref|XP_004140620.2| (PREDICTED: protein AIG1-like [Cucumis sativus])

HSP 1 Score: 191.0 bits (484), Expect = 1.1e-45
Identity = 105/108 (97.22%), Postives = 106/108 (98.15%), Query Frame = 1


Query: 1   MGMVNEVSKVNGGQPYMHDLCSTMTVETKLKEVKTKLEKQLQEDEKEARIIGEKRGEENV 60
           M MVNEV KVNGGQPYMHDLCS+MTVETKLKEVKTKLEKQLQEDEKEARIIGEKRGEENV
Sbjct: 65  MEMVNEVRKVNGGQPYMHDLCSSMTVETKLKEVKTKLEKQLQEDEKEARIIGEKRGEENV 124

Query: 61  KEKSRNLENQLAKAREERVNAENRTQEIQRQYNDEIRRLSHQLQSALQ 109
           KEKSRNLENQLAKAREERVNAENRTQEIQRQYNDEIRRLSHQLQSALQ
Sbjct: 125 KEKSRNLENQLAKAREERVNAENRTQEIQRQYNDEIRRLSHQLQSALQ 172

[Close]

BLAST of CSPI06G08460 vs. NCBI nr
Match: gi|778712150|ref|XP_011656854.1| (PREDICTED: putative protein PHLOEM PROTEIN 2-LIKE A3 isoform X2 [Cucumis sativus])

HSP 1 Score: 189.9 bits (481), Expect = 2.4e-45
Identity = 104/108 (96.30%), Postives = 106/108 (98.15%), Query Frame = 1


Query: 1   MGMVNEVSKVNGGQPYMHDLCSTMTVETKLKEVKTKLEKQLQEDEKEARIIGEKRGEENV 60
           M MVNEV KVNGGQPYMHDLCS+MTVETKLKEVKTKLEKQLQEDEKEARIIGEKRGEENV
Sbjct: 177 MEMVNEVRKVNGGQPYMHDLCSSMTVETKLKEVKTKLEKQLQEDEKEARIIGEKRGEENV 236

Query: 61  KEKSRNLENQLAKAREERVNAENRTQEIQRQYNDEIRRLSHQLQSALQ 109
           KEK+RNLENQLAKAREERVNAENRTQEIQRQYNDEIRRLSHQLQSALQ
Sbjct: 237 KEKNRNLENQLAKAREERVNAENRTQEIQRQYNDEIRRLSHQLQSALQ 284

[Close]

BLAST of CSPI06G08460 vs. NCBI nr
Match: gi|778712147|ref|XP_004140622.2| (PREDICTED: protein AIG1-like isoform X1 [Cucumis sativus])

HSP 1 Score: 189.9 bits (481), Expect = 2.4e-45
Identity = 104/108 (96.30%), Postives = 106/108 (98.15%), Query Frame = 1


Query: 1   MGMVNEVSKVNGGQPYMHDLCSTMTVETKLKEVKTKLEKQLQEDEKEARIIGEKRGEENV 60
           M MVNEV KVNGGQPYMHDLCS+MTVETKLKEVKTKLEKQLQEDEKEARIIGEKRGEENV
Sbjct: 186 MEMVNEVRKVNGGQPYMHDLCSSMTVETKLKEVKTKLEKQLQEDEKEARIIGEKRGEENV 245

Query: 61  KEKSRNLENQLAKAREERVNAENRTQEIQRQYNDEIRRLSHQLQSALQ 109
           KEK+RNLENQLAKAREERVNAENRTQEIQRQYNDEIRRLSHQLQSALQ
Sbjct: 246 KEKNRNLENQLAKAREERVNAENRTQEIQRQYNDEIRRLSHQLQSALQ 293

[Close]

BLAST of CSPI06G08460 vs. NCBI nr
Match: gi|659119620|ref|XP_008459752.1| (PREDICTED: protein AIG1-like isoform X1 [Cucumis melo])

HSP 1 Score: 60.5 bits (145), Expect = 2.2e-06
Identity = 27/31 (87.10%), Postives = 28/31 (90.32%), Query Frame = 1


Query: 1   MGMVNEVSKVNGGQPYMHDLCSTMTVETKLK 32
           MGMVNEV K NGGQPYMHDLCSTMTVE K+K
Sbjct: 187 MGMVNEVKKGNGGQPYMHDLCSTMTVEAKVK 217

[Close]

BLAST of CSPI06G08460 vs. NCBI nr
Match: gi|659119622|ref|XP_008459753.1| (PREDICTED: putative protein PHLOEM PROTEIN 2-LIKE A3 isoform X2 [Cucumis melo])

HSP 1 Score: 60.5 bits (145), Expect = 2.2e-06
Identity = 27/31 (87.10%), Postives = 28/31 (90.32%), Query Frame = 1


Query: 1   MGMVNEVSKVNGGQPYMHDLCSTMTVETKLK 32
           MGMVNEV K NGGQPYMHDLCSTMTVE K+K
Sbjct: 178 MGMVNEVKKGNGGQPYMHDLCSTMTVEAKVK 208

The following BLAST results are available for this feature:

BLAST of CSPI06G08460 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI06G08460 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCJ5_CUCSA	7.4e-46	97.22	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G107840 PE=4 SV=1	[more]
A0A0A0KA09_CUCSA	1.6e-45	96.30	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106820 PE=4 SV=1	[more]
A0A0A0L9V0_CUCSA	9.8e-06	41.51	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G731070 PE=4 SV=1	[more]

BLAST of CSPI06G08460 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI06G08460 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778722087\|ref\|XP_004140620.2\|	1.1e-45	97.22	PREDICTED: protein AIG1-like [Cucumis sativus]	[more]
gi\|778712150\|ref\|XP_011656854.1\|	2.4e-45	96.30	PREDICTED: putative protein PHLOEM PROTEIN 2-LIKE A3 isoform X2 [Cucumis sativus...	[more]
gi\|778712147\|ref\|XP_004140622.2\|	2.4e-45	96.30	PREDICTED: protein AIG1-like isoform X1 [Cucumis sativus]	[more]
gi\|659119620\|ref\|XP_008459752.1\|	2.2e-06	87.10	PREDICTED: protein AIG1-like isoform X1 [Cucumis melo]	[more]
gi\|659119622\|ref\|XP_008459753.1\|	2.2e-06	87.10	PREDICTED: putative protein PHLOEM PROTEIN 2-LIKE A3 isoform X2 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005525	GTP binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G08460.1	CSPI06G08460.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 27..54 score: -coord: 57..108 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI06G08460	Lsi09G016680	Bottle gourd (USVL1VR-Ls)	cpilsiB404
CSPI06G08460	MELO3C022257.2	Melon (DHL92) v3.6.1	cpimedB435
CSPI06G08460	CsaV3_6G008830	Cucumber (Chinese Long) v3	cpicucB364
CSPI06G08460	Cla97C06G112060	Watermelon (97103) v2	cpiwmbB495
CSPI06G08460	Bhi12G001954	Wax gourd	cpiwgoB549
CSPI06G08460	CsGy6G008550	Cucumber (Gy14) v2	cgybcpiB288

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI06G08460	Wax gourd	cpiwgoB539
CSPI06G08460	Cucumber (Gy14) v1	cgycpiB156
CSPI06G08460	Cucurbita maxima (Rimu)	cmacpiB383
CSPI06G08460	Cucurbita maxima (Rimu)	cmacpiB932
CSPI06G08460	Cucurbita moschata (Rifu)	cmocpiB372
CSPI06G08460	Cucurbita moschata (Rifu)	cmocpiB911
CSPI06G08460	Cucumber (Chinese Long) v2	cpicuB314
CSPI06G08460	Melon (DHL92) v3.5.1	cpimeB436
CSPI06G08460	Watermelon (Charleston Gray)	cpiwcgB503
CSPI06G08460	Watermelon (97103) v1	cpiwmB563
CSPI06G08460	Cucurbita pepo (Zucchini)	cpecpiB154
CSPI06G08460	Cucurbita pepo (Zucchini)	cpecpiB332
CSPI06G08460	Bottle gourd (USVL1VR-Ls)	cpilsiB401
CSPI06G08460	Silver-seed gourd	carcpiB0097
CSPI06G08460	Silver-seed gourd	carcpiB0936