CsGy6G008460 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy6G008460
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Golgi to ER traffic protein 4 homolog isoform X1
Location	Chr6 : 7061107 .. 7062727 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTAACAGTTTCTACTTTTCAGATTACTTATGGATCTCTGTTTTATTTGTCGAGACACTTGTTAAAGGCAAAATTCCTTGTGATGATCATCATGATAATACTCTTGGTGAGTTCCTTTGACTTGGTTTCCTGTGTTTCTTTTATAACAGTATGGGTAGATGTTGGGGATGTTATGTTATTGGGATATTACTTGTGGCATGATCGTAATTACACAGTAACTTCTCAACCCCTTAACCTAGGACGTTGGTTAGACTGGATGGTTAAATAGAGTGGATTAGTGGTTTGAAAGTTGGGCCAAATTTTCGCATGGCTCATAATGATGAGACTGGGGAGAGAAATTGCCTTCTTGAAAGGAAGTTATTGGAATTCCTTTGCATTGTTGTTTTCTCATGATCTGAAATTGAATCCTATCGTTTTTCTATTGCTGATTTAGTGTTTCTTATTATTCGGTATTTTCATTTCAATTTGAGATTCAGTTTCTTTTTATAACTTTGTCATCTGTTCGTAATTGCTCTTTCCAAGACAAGTCCATTTGAGGATTAATTTGATAACCGCTATATGGAAGAAAAAATTATCATTTCTTTACTACCTTTCCTTGTCTACTCTTATTTATGAAGAAGTTCTAATGTGATTATGACAAACATTATGTTAGATCGTGTCAGTAAAATTTACAAGAATTTCCAGGAGATTCCATTACCTCAACACTTGAGGGAAGATGATGATATGCAAAACAATTCTCTGAAGCACTTGGTGCTGCACAAACACGGGTGGAAGGATCATCCTCTTTTTTTAAAGCAGCTTTAACGTGAGCCATTCTCCATTCTCTTTCCAATAGTAGTCATTTCTACATTGGGAGTGTGCATAACAAAAACGGAAAATGAGTTTTATTTTTAAGTGCAACTGTTTGAATTATGGCATACATTCATTTGTATCAAGTTAGGTTTGTGCTGTCTCTTTGAATCAGTTATATATAATTCCTTTGTACTGAAGGAGACTACTTGTTTTCTACAAATCTTTAAATATATCAGGTGGTCTATGGAGTTTGGATCGCAGAGGAGTGGATCTCTGGAAATTCATGTCATGCTTGCTACATATATAATTCCGAGTCACCGGAATTGGTATGTTCGGCCAGAGAATATACTTTAAGTGCTTGTTTGAAGTTTCTTTTTGTTTCCAAGAATTTTTGTTTTTGGTGTTGGTCTGTATGATGACTTCATTTTAGTTACAAATGACATGTTTAGGTGTCTAAATTGTTAATAGAAAGAAGATATAACATTCGTTTTATGAGTATGTACGTAATTTGGCAATGACATTATGTACTGCTGACTGCTGCTATGATATGTTTGCTAACAAGGTCATGAGAAGCATAGTCCAGTACCATGAATGATGGAACTGTTGTTGATTGTCCACTTTGACTGATTTAATAGTATCTTCCAGTATTTTACATGTTGCAGGACGTGACCAGAGATTTGCTTGTATATTAGTGAAGAATTGAAATTTTTTACTCTGAGGGATAAGTTTTCTTTTCAACAATTTTTGAGCTATGAGGTCTAGGTTGTTTTTTTGTGGAGGTACTTGTCTCTTAGAAATCTAATGGATGCTAATGTCCTATTTGATG

mRNA sequence

ATGGTTAACAGTTTCTACTTTTCAGATTACTTATGGATCTCTGTTTTATTTGTCGAGACACTTGTTAAAGGCAAAATTCCTTGTGATGATCATCATGATAATACTCTTGATCGTGTCAGTAAAATTTACAAGAATTTCCAGGAGATTCCATTACCTCAACACTTGAGGGAAGATGATGATATGCAAAACAATTCTCTGAAGCACTTGGTGGTCTATGGAGTTTGGATCGCAGAGGAGTGGATCTCTGGAAATTCATGTCATGCTTGCTACATATATAATTCCGAGTCACCGGAATTGGACGTGACCAGAGATTTGCTTGTATATTAGTGAAGAATTGAAATTTTTTACTCTGAGGGATAAGTTTTCTTTTCAACAATTTTTGAGCTATGAGGTCTAGGTTGTTTTTTTGTGGAGGTACTTGTCTCTTAGAAATCTAATGGATGCTAATGTCCTATTTGATG

Coding sequence (CDS)

ATGGTTAACAGTTTCTACTTTTCAGATTACTTATGGATCTCTGTTTTATTTGTCGAGACACTTGTTAAAGGCAAAATTCCTTGTGATGATCATCATGATAATACTCTTGATCGTGTCAGTAAAATTTACAAGAATTTCCAGGAGATTCCATTACCTCAACACTTGAGGGAAGATGATGATATGCAAAACAATTCTCTGAAGCACTTGGTGGTCTATGGAGTTTGGATCGCAGAGGAGTGGATCTCTGGAAATTCATGTCATGCTTGCTACATATATAATTCCGAGTCACCGGAATTGGACGTGACCAGAGATTTGCTTGTATATTAG

Protein sequence

MVNSFYFSDYLWISVLFVETLVKGKIPCDDHHDNTLDRVSKIYKNFQEIPLPQHLREDDDMQNNSLKHLVVYGVWIAEEWISGNSCHACYIYNSESPELDVTRDLLVY

Homology

[Close]

BLAST of CsGy6G008460 vs. NCBI nr
Match: XP_008459732.1 (PREDICTED: Golgi to ER traffic protein 4 homolog isoform X1 [Cucumis melo])

HSP 1 Score: 89.4 bits (220), Expect = 8.4e-15
Identity = 55/110 (50.00%), Postives = 65/110 (59.09%), Query Frame = 0


Query: 13  ISVLFVETLVKGKIPCDDHHDNTLDRVSKIYKNFQEIPLPQHLREDDDMQNNS------- 72
           ++VLFVETLVKGK+P D   DNTLDRV KIYKNF +IPLPQHL EDDDMQ  S       
Sbjct: 85  LAVLFVETLVKGKVPYD---DNTLDRVRKIYKNFPQIPLPQHLGEDDDMQQLSEALGAAK 144

Query: 73  ---------LKHLVVYGVWIAEEWISGNSCH---ACYIYNSESPELDVTR 104
                    LK  + + +    +       H   A YIY SESPE+D+TR
Sbjct: 145 TRVEGCSSFLKAALKWSMEFGSQRSGSPEIHIMLATYIY-SESPEVDMTR 190

[Close]

BLAST of CsGy6G008460 vs. NCBI nr
Match: XP_011656863.1 (PREDICTED: Golgi to ER traffic protein 4 homolog [Cucumis sativus] >KGN46554.1 hypothetical protein Csa_6G108520 [Cucumis sativus])

HSP 1 Score: 88.2 bits (217), Expect = 1.9e-14
Identity = 54/110 (49.09%), Postives = 65/110 (59.09%), Query Frame = 0


Query: 13  ISVLFVETLVKGKIPCDDHHDNTLDRVSKIYKNFQEIPLPQHLREDDDMQNNS------- 72
           ++VLFV+TLVKGK+P D   DNTLDRV KIYKNF +IPLPQHL EDDDMQ  S       
Sbjct: 85  LAVLFVDTLVKGKVPYD---DNTLDRVRKIYKNFPQIPLPQHLGEDDDMQQLSEALGAAK 144

Query: 73  ---------LKHLVVYGVWIAEEWISGNSCH---ACYIYNSESPELDVTR 104
                    LK  + + +    +       H   A YIY SESPE+D+TR
Sbjct: 145 TRVEGCSSFLKAALKWSMEFGSQRSGSPEIHIMLATYIY-SESPEVDMTR 190

[Close]

BLAST of CsGy6G008460 vs. NCBI nr
Match: XP_022964498.1 (Golgi to ER traffic protein 4 homolog [Cucurbita moschata])

HSP 1 Score: 85.1 bits (209), Expect = 1.6e-13
Identity = 52/110 (47.27%), Postives = 63/110 (57.27%), Query Frame = 0


Query: 13  ISVLFVETLVKGKIPCDDHHDNTLDRVSKIYKNFQEIPLPQHLREDDDMQNNS------- 72
           ++VLFVETLVKGK+PCD   DNTL RV KIYKNF +IPLPQ L EDDD+Q  S       
Sbjct: 85  LAVLFVETLVKGKVPCD---DNTLGRVRKIYKNFPQIPLPQQLGEDDDVQQLSEALGAAK 144

Query: 73  ---------LKHLVVYGVWIAEEWISGNSCH---ACYIYNSESPELDVTR 104
                    LK  + + +            H   A Y+Y SESPE+D+TR
Sbjct: 145 TRVEGCSSFLKAALKWSMEFGSHRSGSPEIHIMLATYVY-SESPEVDMTR 190

[Close]

BLAST of CsGy6G008460 vs. NCBI nr
Match: XP_022999910.1 (Golgi to ER traffic protein 4 homolog [Cucurbita maxima])

HSP 1 Score: 85.1 bits (209), Expect = 1.6e-13
Identity = 52/110 (47.27%), Postives = 63/110 (57.27%), Query Frame = 0


Query: 13  ISVLFVETLVKGKIPCDDHHDNTLDRVSKIYKNFQEIPLPQHLREDDDMQNNS------- 72
           ++VLFVETLVKGK+PCD   DNTL RV KIYKNF +IPLPQ L EDDD+Q  S       
Sbjct: 85  LAVLFVETLVKGKVPCD---DNTLGRVRKIYKNFPQIPLPQQLGEDDDVQQLSEALGAAK 144

Query: 73  ---------LKHLVVYGVWIAEEWISGNSCH---ACYIYNSESPELDVTR 104
                    LK  + + +            H   A Y+Y SESPE+D+TR
Sbjct: 145 TRVEGCSSFLKAALKWSMEFGSHRSGSPEIHIMLATYVY-SESPEVDMTR 190

[Close]

BLAST of CsGy6G008460 vs. NCBI nr
Match: XP_023514316.1 (Golgi to ER traffic protein 4 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 83.6 bits (205), Expect = 4.6e-13
Identity = 51/110 (46.36%), Postives = 63/110 (57.27%), Query Frame = 0


Query: 13  ISVLFVETLVKGKIPCDDHHDNTLDRVSKIYKNFQEIPLPQHLREDDDMQNNS------- 72
           ++VLFVETLVKGK+PCD   DNTL RV KIY+NF +IPLPQ L EDDD+Q  S       
Sbjct: 85  LAVLFVETLVKGKVPCD---DNTLGRVRKIYENFPQIPLPQQLGEDDDVQQLSEALGAAK 144

Query: 73  ---------LKHLVVYGVWIAEEWISGNSCH---ACYIYNSESPELDVTR 104
                    LK  + + +            H   A Y+Y SESPE+D+TR
Sbjct: 145 TRVEGCSSFLKAALKWSMEFGSHRSGSPEIHIMLATYVY-SESPEVDMTR 190

[Close]

BLAST of CsGy6G008460 vs. TAIR10
Match: AT5G63220.1 (unknown protein)

HSP 1 Score: 54.7 bits (130), Expect = 4.1e-08
Identity = 26/54 (48.15%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 13  ISVLFVETLVKGKIPCDDHHDNTLDRVSKIYKNFQEIPLPQHL---REDDDMQN 64
           +++LFV+TLVK K PC   +D TLDR+  I+K F  +P+P HL    +D+D+QN
Sbjct: 75  LAILFVDTLVKAKSPC---NDETLDRIRCIFKLFPRVPVPPHLVDVSDDEDVQN 125

[Close]

BLAST of CsGy6G008460 vs. TrEMBL
Match: tr|A0A1S3CAY3|A0A1S3CAY3_CUCME (Golgi to ER traffic protein 4 homolog isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498774 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 5.5e-15
Identity = 55/110 (50.00%), Postives = 65/110 (59.09%), Query Frame = 0


Query: 13  ISVLFVETLVKGKIPCDDHHDNTLDRVSKIYKNFQEIPLPQHLREDDDMQNNS------- 72
           ++VLFVETLVKGK+P D   DNTLDRV KIYKNF +IPLPQHL EDDDMQ  S       
Sbjct: 85  LAVLFVETLVKGKVPYD---DNTLDRVRKIYKNFPQIPLPQHLGEDDDMQQLSEALGAAK 144

Query: 73  ---------LKHLVVYGVWIAEEWISGNSCH---ACYIYNSESPELDVTR 104
                    LK  + + +    +       H   A YIY SESPE+D+TR
Sbjct: 145 TRVEGCSSFLKAALKWSMEFGSQRSGSPEIHIMLATYIY-SESPEVDMTR 190

[Close]

BLAST of CsGy6G008460 vs. TrEMBL
Match: tr|A0A0A0KCK7|A0A0A0KCK7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G108520 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.2e-14
Identity = 54/110 (49.09%), Postives = 65/110 (59.09%), Query Frame = 0


Query: 13  ISVLFVETLVKGKIPCDDHHDNTLDRVSKIYKNFQEIPLPQHLREDDDMQNNS------- 72
           ++VLFV+TLVKGK+P D   DNTLDRV KIYKNF +IPLPQHL EDDDMQ  S       
Sbjct: 85  LAVLFVDTLVKGKVPYD---DNTLDRVRKIYKNFPQIPLPQHLGEDDDMQQLSEALGAAK 144

Query: 73  ---------LKHLVVYGVWIAEEWISGNSCH---ACYIYNSESPELDVTR 104
                    LK  + + +    +       H   A YIY SESPE+D+TR
Sbjct: 145 TRVEGCSSFLKAALKWSMEFGSQRSGSPEIHIMLATYIY-SESPEVDMTR 190

[Close]

BLAST of CsGy6G008460 vs. TrEMBL
Match: tr|A0A1S3CAV6|A0A1S3CAV6_CUCME (Golgi to ER traffic protein 4 homolog isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498774 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 8.8e-13
Identity = 52/106 (49.06%), Postives = 61/106 (57.55%), Query Frame = 0


Query: 13  ISVLFVETLVKGKIPCDDHHDNTLDRVSKIYKNFQEIPLPQHLREDDDMQNNS------- 72
           ++VLFVETLVKGK+P D   DNTLDRV KIYKNF +IPLPQHL EDDDMQ  S       
Sbjct: 85  LAVLFVETLVKGKVPYD---DNTLDRVRKIYKNFPQIPLPQHLGEDDDMQQLSEALGAAK 144

Query: 73  ---------LKHLVVYGVWIAEEWISGNSCH---ACYIYNSESPEL 100
                    LK  + + +    +       H   A YIY SESPE+
Sbjct: 145 TRVEGCSSFLKAALKWSMEFGSQRSGSPEIHIMLATYIY-SESPEV 186

[Close]

BLAST of CsGy6G008460 vs. TrEMBL
Match: tr|A0A2I4GAQ0|A0A2I4GAQ0_9ROSI (Golgi to ER traffic protein 4 homolog OS=Juglans regia OX=51240 GN=LOC109006193 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.3e-11
Identity = 51/110 (46.36%), Postives = 61/110 (55.45%), Query Frame = 0


Query: 13  ISVLFVETLVKGKIPCDDHHDNTLDRVSKIYKNFQEIPLPQHLREDDDMQNNS------- 72
           ++VLFVETLVKGKIP D   D TLDRV KIYK F +IPLP+HL +DD+MQ  S       
Sbjct: 76  LAVLFVETLVKGKIPYD---DETLDRVRKIYKTFPQIPLPRHLPDDDEMQQISEALGAAK 135

Query: 73  ---------LKHLVVYGVWIAEEWISGNSCH---ACYIYNSESPELDVTR 104
                    LK  + + V            H   A YIY SESPE+D+ R
Sbjct: 136 TRVEGCSSFLKAAIKWSVEFGAHKNGSPELHVMLAEYIY-SESPEVDMAR 181

[Close]

BLAST of CsGy6G008460 vs. TrEMBL
Match: tr|A0A2N9IF80|A0A2N9IF80_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS52348 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.9e-11
Identity = 51/110 (46.36%), Postives = 60/110 (54.55%), Query Frame = 0


Query: 13  ISVLFVETLVKGKIPCDDHHDNTLDRVSKIYKNFQEIPLPQHLREDDDMQNNS------- 72
           ++VLFVETLVKGKIP D     TLDRV KIYK F +IPLPQHL +DD+MQ  S       
Sbjct: 76  LAVLFVETLVKGKIPYD---SETLDRVRKIYKMFPQIPLPQHLPDDDEMQQISEALGAAK 135

Query: 73  ---------LKHLVVYGVWIAEEWISGNSCH---ACYIYNSESPELDVTR 104
                    LK  + + V            H   A YIY SESPE+D+ R
Sbjct: 136 IRVEGCSSFLKAAMKWSVEFGAHRSGSPELHVMLAEYIY-SESPEVDMAR 181

The following BLAST results are available for this feature:

BLAST of CsGy6G008460 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008459732.1	8.4e-15	50.00	PREDICTED: Golgi to ER traffic protein 4 homolog isoform X1 [Cucumis melo]	[more]
XP_011656863.1	1.9e-14	49.09	PREDICTED: Golgi to ER traffic protein 4 homolog [Cucumis sativus] >KGN46554.1 h...	[more]
XP_022964498.1	1.6e-13	47.27	Golgi to ER traffic protein 4 homolog [Cucurbita moschata]	[more]
XP_022999910.1	1.6e-13	47.27	Golgi to ER traffic protein 4 homolog [Cucurbita maxima]	[more]
XP_023514316.1	4.6e-13	46.36	Golgi to ER traffic protein 4 homolog [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsGy6G008460 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G63220.1	4.1e-08	48.15	unknown protein	[more]

BLAST of CsGy6G008460 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy6G008460 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CAY3\|A0A1S3CAY3_CUCME	5.5e-15	50.00	Golgi to ER traffic protein 4 homolog isoform X1 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
tr\|A0A0A0KCK7\|A0A0A0KCK7_CUCSA	1.2e-14	49.09	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G108520 PE=4 SV=1	[more]
tr\|A0A1S3CAV6\|A0A1S3CAV6_CUCME	8.8e-13	49.06	Golgi to ER traffic protein 4 homolog isoform X2 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
tr\|A0A2I4GAQ0\|A0A2I4GAQ0_9ROSI	1.3e-11	46.36	Golgi to ER traffic protein 4 homolog OS=Juglans regia OX=51240 GN=LOC109006193 ...	[more]
tr\|A0A2N9IF80\|A0A2N9IF80_FAGSY	4.9e-11	46.36	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS52348 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G008460.1	CsGy6G008460.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy6G008460	Lsi09G016410	Bottle gourd (USVL1VR-Ls)	cgyblsiB364

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy6G008460	Watermelon (97103) v2	cgybwmbB446
CsGy6G008460	Wax gourd	cgybwgoB511
CsGy6G008460	Cucurbita pepo (Zucchini)	cgybcpeB732
CsGy6G008460	Cucumber (Chinese Long) v2	cgybcuB282
CsGy6G008460	Bottle gourd (USVL1VR-Ls)	cgyblsiB366
CsGy6G008460	Watermelon (Charleston Gray)	cgybwcgB438
CsGy6G008460	Watermelon (97103) v1	cgybwmB509
CsGy6G008460	Wild cucumber (PI 183967)	cgybcpiB288
CsGy6G008460	Cucumber (Chinese Long) v3	cgybcucB298