CsGy6G004960 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy6G004960
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	hypothetical protein
Location	Chr6 : 4591269 .. 4593437 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAAAATGGGATCTTCAATGGCTCCTATTCTTTTTGCTGCCTTTGTTGCTCTCCTTTCCCTAACTCTGCCGTCCACTACCAATGCTAATTATATCTACGCTTCTCCTCCTCCACCTAAGAAGGTATATTACCCGCCTCCAGTATACCATTCTCCTCCACCACCCAAGAAATCATACTATCCACCTCCAGTGTATCACTCTCCACCACCACCCAAGAAGGTTTACTATCCACCACCAGTTTACTCTCCACCACCACCAAAGAAGGTGTATTACCCACCTCCTGTCTACAAGTCTCCTCCGCCACCCAAGAAGGTTTATTACCCACCTCCCGTCTACAAGTCTCCTCCGCCACCTAAGAAGGTGTATTACCCACCTCCCGTCTACAAGTCTCCCCCGCCTCCCAAGAAGGTGTACTACCCACCTCCCGTCTACAAGTCTCCCCCACCTCCCAAGAAGGTGTACTACCCACCTCCCGTCTACAAGTCTCCCCCACCTCCCAAGAAGGTATACTACCCTCCTCCCGTCTATAAGTCTCCTCCACCACCAAAGAAGGTATACTACCCACCTCCAGTCTACAAGTCTCCCCCACCTCCCAAGAAGGTATACTATCCACCACCCGTCTATAAGTCTCCTCCACCACCAAAGAAAGTATACTACCCACCACCAGTCTACTCACCACCACCGCCAAAGAAGGTATACTACCCACCTCCCGTCTACTCACCACCACCACCGAAGAAGGTGTACTATCCACCTCCCGTCTACTCACCACCACCACCGAAGAAGGTGTACTACCCACCTCCCGTCTACTCACCACCACCACCAAAGAAGGTGTACTACCCACCCCCCGTCTACTCACCACCACCACCGAAGAAGGTGTACTACCCACCACCCGTCTACTCTCCACCACCACCGAAGAAGGTATACTACCCACCACCCGTCTACTCTCCACCACCACCGAAGAAGGTATACTACCCACCACCCGTCTACTCTCCACCACCACCGAAGAAGGTATACTACCCACCACCCGTCTACTCTCCACCACCACCGAAGAAGGTATACTACCCTCCTCCCGTCTACTCTCCACCACCACCAAAGAAAGTATACTATCCACCTCCCGTCTACTCTCCACCACCACCAGTATACCACTCCCCACCACCTCCGGTCTATCATTCTCCACCACCACCAGTATACCATTCCCCACCACCTCCCGTTTATTACTACTCATCGCCACCGCCACCTCCACACTACTAGGAATTAAATGTCCTAGGTCAAGGTAATTTTAAATCTCCCACCAAATTGCGTTGTCTTTTCTCCACGTATATAACAGTAAACATAACTAATAATATATGTTACTTTCAAAGGACAGAGAAATGTGGATGAAAATGAAAACAAACAAATAATAATTCTGTGGATTTTTAACATCATAAAAATTTGGTTGGCCGTCACTAAAATTTGGACTACTGTTTATGATTTATATCCAAAATTCAGTGGTAGGGACCCCAATAGATAGAGAAAATTCAAAAATAAAAAACAAAAACTTGGGTCCAAATAATTAATTTTGGTTAATTTGTTGTGTTGTGCAGGGATCTGAAGATGAGAATATATATATGTGGAAGTCAAAATAAGAGGGTTTTGTTTGAAAGATTTGAAGCACACAGTGTGAATTTTAGTTTGGTTCAATAGGGGAAATGAAAGGAATCAATCTCTATAGTATATTTGGTGTTTCTTTTTCATATATTACTATTGATATTATTATATTACAGCTTTCCAATATTATTATTGCAGGTTTTAAATCAAATCACATGTATTTGCTTTGTAAAACGGCTTTACTTCTCATGTACTGTCTTTATCTGTAATGAATCTTAGCTCATCCTTTTTTGCTCAAAGCAGAGGTTGTGCTATACTTAATAGCTTAATAAATGCATTTTCATCACTTTTAATTTCTCATTACACAAATATAACAACAGTTAGTTCTATTTTCTATGTTCCACTTAATTATTCAACTACATAATTTTTCTTTTTTGTGACGAGAGAGTAGATCGTAGTTAAGTGTTGCTCTCTTTTCATTATCAAATCTTTCAATTCTTTCTCTTTGTTTAGTCGTTTGATAAGACCTCCATTCAAAATTAACCTAATTATTAACCTAATCACTTTTCAAAATCTAAG

mRNA sequence

ATGGGAAAAATGGGATCTTCAATGGCTCCTATTCTTTTTGCTGCCTTTGTTGCTCTCCTTTCCCTAACTCTGCCGTCCACTACCAATGCTAATTATATCTACGCTTCTCCTCCTCCACCTAAGAAGGTATATTACCCGCCTCCAGTATACCATTCTCCTCCACCACCCAAGAAATCATACTATCCACCTCCAGTGTATCACTCTCCACCACCACCCAAGAAGGTTTACTATCCACCACCAGTTTACTCTCCACCACCACCAAAGAAGGTGTACTACCCACCTCCCGTCTACAAGTCTCCCCCACCTCCCAAGAAGGTATACTACCCTCCTCCCGTCTATAAGTCTCCTCCACCACCAAAGAAGGTATACTACCCACCTCCAGTCTACAAGTCTCCCCCACCTCCCAAGAAGGTATACTATCCACCACCCGTCTATAAGTCTCCTCCACCACCAAAGAAAGTATACTACCCACCACCAGTCTACTCACCACCACCGCCAAAGAAGGTATACTACCCACCTCCCGTCTACTCACCACCACCACCGAAGAAGGTGTACTATCCACCTCCCGTCTACTCACCACCACCACCGAAGAAGGTGTACTACCCACCTCCCGTCTACTCACCACCACCACCAAAGAAGGTGTACTACCCACCCCCCGTCTACTCACCACCACCACCGAAGAAGGTGTACTACCCACCACCCGTCTACTCTCCACCACCACCGAAGAAGGTATACTACCCACCACCCGTCTACTCTCCACCACCACCGAAGAAGGTATACTACCCACCACCCGTCTACTCTCCACCACCACCGAAGAAGGTATACTACCCACCACCCGTCTACTCTCCACCACCACCGAAGAAGGTATACTACCCTCCTCCCGTCTACTCTCCACCACCACCAAAGAAAGTATACTATCCACCTCCCGTCTACTCTCCACCACCACCAGTATACCACTCCCCACCACCTCCGGTCTATCATTCTCCACCACCACCAGTATACCATTCCCCACCACCTCCCGGATCTGAAGATGAGAATATATATATGTGGAAGTCAAAATAAGAGGGTTTTGTTTGAAAGATTTGAAGCACACAGTGTGAATTTTAGTTTGGTTCAATAGGGGAAATGAAAGGAATCAATCTCTATAGTATATTTGGTGTTTCTTTTTCATATATTACTATTGATATTATTATATTACAGCTTTCCAATATTATTATTGCAGGTTTTAAATCAAATCACATGTATTTGCTTTGTAAAACGGCTTTACTTCTCATGTACTGTCTTTATCTGTAATGAATCTTAGCTCATCCTTTTTTGCTCAAAGCAGAGGTTGTGCTATACTTAATAGCTTAATAAATGCATTTTCATCACTTTTAATTTCTCATTACACAAATATAACAACAGTTAGTTCTATTTTCTATGTTCCACTTAATTATTCAACTACATAATTTTTCTTTTTTGTGACGAGAGAGTAGATCGTAGTTAAGTGTTGCTCTCTTTTCATTATCAAATCTTTCAATTCTTTCTCTTTGTTTAGTCGTTTGATAAGACCTCCATTCAAAATTAACCTAATTATTAACCTAATCACTTTTCAAAATCTAAG

Coding sequence (CDS)

ATGGGAAAAATGGGATCTTCAATGGCTCCTATTCTTTTTGCTGCCTTTGTTGCTCTCCTTTCCCTAACTCTGCCGTCCACTACCAATGCTAATTATATCTACGCTTCTCCTCCTCCACCTAAGAAGGTATATTACCCGCCTCCAGTATACCATTCTCCTCCACCACCCAAGAAATCATACTATCCACCTCCAGTGTATCACTCTCCACCACCACCCAAGAAGGTTTACTATCCACCACCAGTTTACTCTCCACCACCACCAAAGAAGGTGTACTACCCACCTCCCGTCTACAAGTCTCCCCCACCTCCCAAGAAGGTATACTACCCTCCTCCCGTCTATAAGTCTCCTCCACCACCAAAGAAGGTATACTACCCACCTCCAGTCTACAAGTCTCCCCCACCTCCCAAGAAGGTATACTATCCACCACCCGTCTATAAGTCTCCTCCACCACCAAAGAAAGTATACTACCCACCACCAGTCTACTCACCACCACCGCCAAAGAAGGTATACTACCCACCTCCCGTCTACTCACCACCACCACCGAAGAAGGTGTACTATCCACCTCCCGTCTACTCACCACCACCACCGAAGAAGGTGTACTACCCACCTCCCGTCTACTCACCACCACCACCAAAGAAGGTGTACTACCCACCCCCCGTCTACTCACCACCACCACCGAAGAAGGTGTACTACCCACCACCCGTCTACTCTCCACCACCACCGAAGAAGGTATACTACCCACCACCCGTCTACTCTCCACCACCACCGAAGAAGGTATACTACCCACCACCCGTCTACTCTCCACCACCACCGAAGAAGGTATACTACCCACCACCCGTCTACTCTCCACCACCACCGAAGAAGGTATACTACCCTCCTCCCGTCTACTCTCCACCACCACCAAAGAAAGTATACTATCCACCTCCCGTCTACTCTCCACCACCACCAGTATACCACTCCCCACCACCTCCGGTCTATCATTCTCCACCACCACCAGTATACCATTCCCCACCACCTCCCGGATCTGAAGATGAGAATATATATATGTGGAAGTCAAAATAA

Protein sequence

MGKMGSSMAPILFAAFVALLSLTLPSTTNANYIYASPPPPKKVYYPPPVYHSPPPPKKSYYPPPVYHSPPPPKKVYYPPPVYSPPPPKKVYYPPPVYKSPPPPKKVYYPPPVYKSPPPPKKVYYPPPVYKSPPPPKKVYYPPPVYKSPPPPKKVYYPPPVYSPPPPKKVYYPPPVYSPPPPKKVYYPPPVYSPPPPKKVYYPPPVYSPPPPKKVYYPPPVYSPPPPKKVYYPPPVYSPPPPKKVYYPPPVYSPPPPKKVYYPPPVYSPPPPKKVYYPPPVYSPPPPKKVYYPPPVYSPPPPKKVYYPPPVYSPPPPVYHSPPPPVYHSPPPPVYHSPPPPGSEDENIYMWKSK

Homology

[Close]

BLAST of CsGy6G004960 vs. NCBI nr
Match: KGN46155.1 (hypothetical protein Csa_6G058200 [Cucumis sativus])

HSP 1 Score: 69.7 bits (169), Expect = 2.2e-08
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 0


Query: 1  MGKMGSSMAPILFAAFVALLSLTLPSTTNANYIYAS 37
          MGKMGSSMAPILFAAFVALLSLTLPSTTNANYIYAS
Sbjct: 1  MGKMGSSMAPILFAAFVALLSLTLPSTTNANYIYAS 36

[Close]

BLAST of CsGy6G004960 vs. NCBI nr
Match: XP_022961603.1 (extensin-1-like [Cucurbita moschata])

HSP 1 Score: 64.3 bits (155), Expect = 9.4e-07
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 1  MGKMGSSMAPILFAAFVALLSLTLPSTTNANYIYAS 37
          MGKMGSSMAP+LF AFVALLSL+LPSTTNANY YAS
Sbjct: 1  MGKMGSSMAPLLFTAFVALLSLSLPSTTNANYFYAS 36

[Close]

BLAST of CsGy6G004960 vs. NCBI nr
Match: XP_008441528.1 (PREDICTED: extensin-1-like [Cucumis melo])

HSP 1 Score: 63.5 bits (153), Expect = 1.6e-06
Identity = 33/36 (91.67%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 1  MGKMGSSMAPILFAAFVALLSLTLPSTTNANYIYAS 37
          MGKMGSSMAP LFAAFVALLSLTLPS+ NANYIYAS
Sbjct: 1  MGKMGSSMAPHLFAAFVALLSLTLPSSANANYIYAS 36

[Close]

BLAST of CsGy6G004960 vs. NCBI nr
Match: XP_022990411.1 (extensin-1-like [Cucurbita maxima])

HSP 1 Score: 62.0 bits (149), Expect = 4.7e-06
Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 1  MGKMGSSMAPILFAAFVALLSLTLPSTTNANYIYAS 37
          MGKMGSSMAP+LF AFVALLSL+ PSTT+ANY+YAS
Sbjct: 1  MGKMGSSMAPLLFTAFVALLSLSFPSTTHANYVYAS 36

[Close]

BLAST of CsGy6G004960 vs. NCBI nr
Match: XP_022939251.1 (extensin-1-like [Cucurbita moschata])

HSP 1 Score: 58.9 bits (141), Expect = 4.0e-05
Identity = 28/36 (77.78%), Postives = 33/36 (91.67%), Query Frame = 0


Query: 1  MGKMGSSMAPILFAAFVALLSLTLPSTTNANYIYAS 37
          MGKMGSS AP+LF AF+A+LSL LPSTT+ANY+YAS
Sbjct: 1  MGKMGSSWAPLLFGAFLAILSLNLPSTTSANYVYAS 36

[Close]

BLAST of CsGy6G004960 vs. TrEMBL
Match: tr|A0A0A0K8S7|A0A0A0K8S7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G058200 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.5e-08
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 0


Query: 1  MGKMGSSMAPILFAAFVALLSLTLPSTTNANYIYAS 37
          MGKMGSSMAPILFAAFVALLSLTLPSTTNANYIYAS
Sbjct: 1  MGKMGSSMAPILFAAFVALLSLTLPSTTNANYIYAS 36

[Close]

BLAST of CsGy6G004960 vs. TrEMBL
Match: tr|A0A1S3B372|A0A1S3B372_CUCME (extensin-1-like OS=Cucumis melo OX=3656 GN=LOC103485630 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.1e-06
Identity = 33/36 (91.67%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 1  MGKMGSSMAPILFAAFVALLSLTLPSTTNANYIYAS 37
          MGKMGSSMAP LFAAFVALLSLTLPS+ NANYIYAS
Sbjct: 1  MGKMGSSMAPHLFAAFVALLSLTLPSSANANYIYAS 36

The following BLAST results are available for this feature:

BLAST of CsGy6G004960 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN46155.1	2.2e-08	100.00	hypothetical protein Csa_6G058200 [Cucumis sativus]	[more]
XP_022961603.1	9.4e-07	88.89	extensin-1-like [Cucurbita moschata]	[more]
XP_008441528.1	1.6e-06	91.67	PREDICTED: extensin-1-like [Cucumis melo]	[more]
XP_022990411.1	4.7e-06	83.33	extensin-1-like [Cucurbita maxima]	[more]
XP_022939251.1	4.0e-05	77.78	extensin-1-like [Cucurbita moschata]	[more]

BLAST of CsGy6G004960 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy6G004960 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy6G004960 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K8S7\|A0A0A0K8S7_CUCSA	1.5e-08	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G058200 PE=4 SV=1	[more]
tr\|A0A1S3B372\|A0A1S3B372_CUCME	1.1e-06	91.67	extensin-1-like OS=Cucumis melo OX=3656 GN=LOC103485630 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G004960.1	CsGy6G004960.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 334..353
None	No IPR available	PANTHER	PTHR36586	FAMILY NOT NAMED	coord: 187..339 coord: 35..204

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy6G004960	Csa6G058200	Cucumber (Chinese Long) v2	cgybcuB282
CsGy6G004960	CSPI06G05030	Wild cucumber (PI 183967)	cgybcpiB288
CsGy6G004960	CmaCh04G024410	Cucurbita maxima (Rimu)	cgybcmaB835
CsGy6G004960	CmoCh04G025550	Cucurbita moschata (Rifu)	cgybcmoB815
CsGy6G004960	MELO3C008366.2	Melon (DHL92) v3.6.1	cgybmedB409
CsGy6G004960	CsaV3_6G005380	Cucumber (Chinese Long) v3	cgybcucB298
CsGy6G004960	Cla97C08G149570	Watermelon (97103) v2	cgybwmbB475

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy6G004960	Wax gourd	cgybwgoB546
CsGy6G004960	Cucurbita pepo (Zucchini)	cgybcpeB740
CsGy6G004960	Bottle gourd (USVL1VR-Ls)	cgyblsiB444
CsGy6G004960	Melon (DHL92) v3.5.1	cgybmeB411
CsGy6G004960	Watermelon (Charleston Gray)	cgybwcgB468
CsGy6G004960	Watermelon (97103) v1	cgybwmB441
CsGy6G004960	Cucumber (Chinese Long) v3	cgybcucB252