CsGy6G000780 (gene) Cucumber (Gy14) v2

Overview
NameCsGy6G000780
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr6 : 515143 .. 515648 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGCTTGCAATTCGTTAGCCACCGGATCTCCTCCGCCCCCTCGAACTCGTACAAGCAAACCGCGCATCTCTCCGGCGGGTTTGGCAGATCGGAGAATTTCACCACCGGGAGGAGTTCGCGGAGGAGTAGGGCCGACGGGGGAGGGTTGAGGGGAAATTGGAGTTCCGGAGGTAGATTGTCGGAGGGGAGGAATTCGGGTAGGCCGAGGAGGCGGAAGAGGGAGAGGATGAGGAATTTGAGAACGTCGAGGAGGGAGAGGAGGTGGAGGAATAGGGTGGGGAAGAAAACTTCGGTGCAACCCACGGGAAAGCCCATTACGGAGGTTTGATTTTGTAGATTGAAGTAAGGTAGTTAATGGGGAGTCTGTGTTGGGAAGAAGGAGAGGGGGAATTTGATTTAATATATAGAGAGTCGGGGGAGGAGGAGGAAGAAGAAGGAGGAGGAGATGTGGGAGGTGATAAAATCACATGGTGGTACAATGTGGGTGACGGAAATGACCAATAG

mRNA sequence

ATGTGCTTGCAATTCGTTAGCCACCGGATCTCCTCCGCCCCCTCGAACTCGTACAAGCAAACCGCGCATCTCTCCGGCGGGTTTGGCAGATCGGAGAATTTCACCACCGGGAGGAGTTCGCGGAGGAGTAGGGCCGACGGGGGAGGGTTGAGGGGAAATTGGAGTTCCGGAGGTAGATTGTCGGAGGGGAGGAATTCGGGTAGGCCGAGGAGGCGGAAGAGGGAGAGGATGAGGAATTTGAGAACGTCGAGGAGGGAGAGGAGGTGGAGGAATAGGGTGGGGAAGAAAACTTCGGTGCAACCCACGGGAAAGCCCATTACGGAGTTAATGGGGAGTCTGTGTTGGGAAGAAGGAGAGGGGGAATTTGATTTAATATATAGAGAGTCGGGGGAGGAGGAGGAAGAAGAAGGAGGAGGAGATGTGGGAGGTGATAAAATCACATGGTGGTACAATGTGGGTGACGGAAATGACCAATAG

Coding sequence (CDS)

ATGTGCTTGCAATTCGTTAGCCACCGGATCTCCTCCGCCCCCTCGAACTCGTACAAGCAAACCGCGCATCTCTCCGGCGGGTTTGGCAGATCGGAGAATTTCACCACCGGGAGGAGTTCGCGGAGGAGTAGGGCCGACGGGGGAGGGTTGAGGGGAAATTGGAGTTCCGGAGGTAGATTGTCGGAGGGGAGGAATTCGGGTAGGCCGAGGAGGCGGAAGAGGGAGAGGATGAGGAATTTGAGAACGTCGAGGAGGGAGAGGAGGTGGAGGAATAGGGTGGGGAAGAAAACTTCGGTGCAACCCACGGGAAAGCCCATTACGGAGTTAATGGGGAGTCTGTGTTGGGAAGAAGGAGAGGGGGAATTTGATTTAATATATAGAGAGTCGGGGGAGGAGGAGGAAGAAGAAGGAGGAGGAGATGTGGGAGGTGATAAAATCACATGGTGGTACAATGTGGGTGACGGAAATGACCAATAG

Protein sequence

MCLQFVSHRISSAPSNSYKQTAHLSGGFGRSENFTTGRSSRRSRADGGGLRGNWSSGGRLSEGRNSGRPRRRKRERMRNLRTSRRERRWRNRVGKKTSVQPTGKPITELMGSLCWEEGEGEFDLIYRESGEEEEEEGGGDVGGDKITWWYNVGDGNDQ
Homology
[Close]
BLAST of CsGy6G000780 vs. NCBI nr
Match: KGN45684.1 (hypothetical protein Csa_6G006700 [Cucumis sativus])

HSP 1 Score: 169.1 bits (427), Expect = 1.2e-38
Identity = 105/109 (96.33%), Postives = 106/109 (97.25%), Query Frame = 0 

Query: 1   MCLQFVSHRISSAPSNSYKQTAHLSGGFGRSENFTTGRSSRRSRADGGGLRGNWSSGGRL 60
           MCLQFVSHRISSAPSNSYKQTAHLSGGFGRSENFTTGRSSRRSRADGGGLRGNWSSGGRL
Sbjct: 1   MCLQFVSHRISSAPSNSYKQTAHLSGGFGRSENFTTGRSSRRSRADGGGLRGNWSSGGRL 60

Query: 61  SEGRNSGRPXXXXXXXXXXXXXXXXXXXWRNRVGKKTSVQPTGKPITEL 110
           SEGRNSGRP XXXXXXXXXXXXXXXXX WRN VGKKTSVQPTGKPITE+
Sbjct: 61  SEGRNSGRPRXXXXXXXXXXXXXXXXXRWRNMVGKKTSVQPTGKPITEV 109

[Close]
BLAST of CsGy6G000780 vs. TrEMBL
Match: tr|A0A0A0KA13|A0A0A0KA13_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G006700 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 8.0e-39
Identity = 105/109 (96.33%), Postives = 106/109 (97.25%), Query Frame = 0 

Query: 1   MCLQFVSHRISSAPSNSYKQTAHLSGGFGRSENFTTGRSSRRSRADGGGLRGNWSSGGRL 60
           MCLQFVSHRISSAPSNSYKQTAHLSGGFGRSENFTTGRSSRRSRADGGGLRGNWSSGGRL
Sbjct: 1   MCLQFVSHRISSAPSNSYKQTAHLSGGFGRSENFTTGRSSRRSRADGGGLRGNWSSGGRL 60

Query: 61  SEGRNSGRPXXXXXXXXXXXXXXXXXXXWRNRVGKKTSVQPTGKPITEL 110
           SEGRNSGRP XXXXXXXXXXXXXXXXX WRN VGKKTSVQPTGKPITE+
Sbjct: 61  SEGRNSGRPRXXXXXXXXXXXXXXXXXRWRNMVGKKTSVQPTGKPITEV 109

The following BLAST results are available for this feature:
BLAST of CsGy6G000780 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN45684.11.2e-3896.33hypothetical protein Csa_6G006700 [Cucumis sativus][more]
BLAST of CsGy6G000780 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy6G000780 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy6G000780 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KA13|A0A0A0KA13_CUCSA8.0e-3996.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G006700 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy6G000780.1CsGy6G000780.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 129..158

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy6G000780Csa6G006700Cucumber (Chinese Long) v2cgybcuB282
CsGy6G000780CmaCh08G008940Cucurbita maxima (Rimu)cgybcmaB873
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy6G000780Watermelon (97103) v2cgybwmbB395
CsGy6G000780Watermelon (97103) v2cgybwmbB444
CsGy6G000780Watermelon (97103) v2cgybwmbB451
CsGy6G000780Wax gourdcgybwgoB510
CsGy6G000780Wax gourdcgybwgoB520
CsGy6G000780Cucumber (Gy14) v2cgybcgybB146
CsGy6G000780Cucumber (Gy14) v2cgybcgybB112
CsGy6G000780Cucurbita maxima (Rimu)cgybcmaB752
CsGy6G000780Cucurbita moschata (Rifu)cgybcmoB726
CsGy6G000780Cucurbita moschata (Rifu)cgybcmoB733
CsGy6G000780Cucurbita moschata (Rifu)cgybcmoB854
CsGy6G000780Cucurbita pepo (Zucchini)cgybcpeB721
CsGy6G000780Cucurbita pepo (Zucchini)cgybcpeB776
CsGy6G000780Cucumber (Chinese Long) v2cgybcuB267
CsGy6G000780Cucumber (Chinese Long) v2cgybcuB278
CsGy6G000780Bottle gourd (USVL1VR-Ls)cgyblsiB360
CsGy6G000780Bottle gourd (USVL1VR-Ls)cgyblsiB371
CsGy6G000780Bottle gourd (USVL1VR-Ls)cgyblsiB429
CsGy6G000780Melon (DHL92) v3.5.1cgybmeB362
CsGy6G000780Melon (DHL92) v3.5.1cgybmeB366
CsGy6G000780Melon (DHL92) v3.5.1cgybmeB439
CsGy6G000780Melon (DHL92) v3.6.1cgybmedB362
CsGy6G000780Melon (DHL92) v3.6.1cgybmedB367
CsGy6G000780Melon (DHL92) v3.6.1cgybmedB434
CsGy6G000780Watermelon (Charleston Gray)cgybwcgB400
CsGy6G000780Watermelon (Charleston Gray)cgybwcgB443
CsGy6G000780Watermelon (97103) v1cgybwmB467
CsGy6G000780Watermelon (97103) v1cgybwmB471
CsGy6G000780Watermelon (97103) v1cgybwmB503
CsGy6G000780Watermelon (97103) v1cgybwmB504
CsGy6G000780Wild cucumber (PI 183967)cgybcpiB274
CsGy6G000780Wild cucumber (PI 183967)cgybcpiB284
CsGy6G000780Wild cucumber (PI 183967)cgybcpiB288
CsGy6G000780Silver-seed gourdcarcgybB0074
CsGy6G000780Silver-seed gourdcarcgybB0602
CsGy6G000780Silver-seed gourdcarcgybB0917
CsGy6G000780Cucumber (Chinese Long) v3cgybcucB280
CsGy6G000780Cucumber (Chinese Long) v3cgybcucB293
CsGy6G000780Cucumber (Chinese Long) v3cgybcucB298