CmaCh08G008940 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh08G008940
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr08 : 5544665 .. 5545087 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGCTTGCAGTTGGTCAGCCACCGGATCTCCTCTGCTCCCTCGAACTCGTATAGGCATACGGCGCAGCTCTCTGCCGCCGCCTGGGGGACATCCGAGAATTTCACTACGGGGAGGAATTCGCGGAGGAGCACGGCGGAGGCTGGTGGGTTCAAGGGAAACCCAACCTCCGGCGAGACGGCGGCGTCGGAGTGGAGAAATTCCGGGAGGCCGAGGAGGCGGAACAGGTACAGAATTAGGCGTTTGAGTAAGTCGAGGAGAGAGAGTAAATGGAGGAATATTGTGGGGAAGAAAACCTCCGTGCAACCCACCGGAAAACCCATCTGGTCGGGTCGGAAAATGGACAAATTTACAAATGGGTTTCTGTTGATTTTGCAGAAGGGGGTTCTTTTGCTTCTTGGTCTTGCAGAAATGGGAATTTGA

mRNA sequence

ATGTGCTTGCAGTTGGTCAGCCACCGGATCTCCTCTGCTCCCTCGAACTCGTATAGGCATACGGCGCAGCTCTCTGCCGCCGCCTGGGGGACATCCGAGAATTTCACTACGGGGAGGAATTCGCGGAGGAGCACGGCGGAGGCTGGTGGGTTCAAGGGAAACCCAACCTCCGGCGAGACGGCGGCGTCGGAGTGGAGAAATTCCGGGAGGCCGAGGAGGCGGAACAGGTACAGAATTAGGCGTTTGAGTAAGTCGAGGAGAGAGAGTAAATGGAGGAATATTGTGGGGAAGAAAACCTCCGTGCAACCCACCGGAAAACCCATCTGGTCGGGTCGGAAAATGGACAAATTTACAAATGGGTTTCTGTTGATTTTGCAGAAGGGGGTTCTTTTGCTTCTTGGTCTTGCAGAAATGGGAATTTGA

Coding sequence (CDS)

ATGTGCTTGCAGTTGGTCAGCCACCGGATCTCCTCTGCTCCCTCGAACTCGTATAGGCATACGGCGCAGCTCTCTGCCGCCGCCTGGGGGACATCCGAGAATTTCACTACGGGGAGGAATTCGCGGAGGAGCACGGCGGAGGCTGGTGGGTTCAAGGGAAACCCAACCTCCGGCGAGACGGCGGCGTCGGAGTGGAGAAATTCCGGGAGGCCGAGGAGGCGGAACAGGTACAGAATTAGGCGTTTGAGTAAGTCGAGGAGAGAGAGTAAATGGAGGAATATTGTGGGGAAGAAAACCTCCGTGCAACCCACCGGAAAACCCATCTGGTCGGGTCGGAAAATGGACAAATTTACAAATGGGTTTCTGTTGATTTTGCAGAAGGGGGTTCTTTTGCTTCTTGGTCTTGCAGAAATGGGAATTTGA

Protein sequence

MCLQLVSHRISSAPSNSYRHTAQLSAAAWGTSENFTTGRNSRRSTAEAGGFKGNPTSGETAASEWRNSGRPRRRNRYRIRRLSKSRRESKWRNIVGKKTSVQPTGKPIWSGRKMDKFTNGFLLILQKGVLLLLGLAEMGI
Homology
[Close]
BLAST of CmaCh08G008940 vs. TrEMBL
Match: A0A0A0KA13_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G006700 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 5.2e-28
Identity = 77/108 (71.30%), Postives = 86/108 (79.63%), Query Frame = 1 

Query: 1   MCLQLVSHRISSAPSNSYRHTAQLSAAAWGTSENFTTGRNSRRSTAEAGGFKGNPTSGET 60
           MCLQ VSHRISSAPSNSY+ TA LS   +G SENFTTGR+SRRS A+ GG +GN +SG  
Sbjct: 1   MCLQFVSHRISSAPSNSYKQTAHLSGG-FGRSENFTTGRSSRRSRADGGGLRGNWSSGGR 60

Query: 61  AASEWRNSGRPRRRNRYRIRRLSKSRRESKWRNIVGKKTSVQPTGKPI 109
             SE RNSGRPRRR R R+R L  SRRE +WRN+VGKKTSVQPTGKPI
Sbjct: 61  L-SEGRNSGRPRRRKRERMRNLRTSRRERRWRNMVGKKTSVQPTGKPI 106

[Close]
BLAST of CmaCh08G008940 vs. NCBI nr
Match: gi|700190480|gb|KGN45684.1| (hypothetical protein Csa_6G006700 [Cucumis sativus])

HSP 1 Score: 132.1 bits (331), Expect = 7.5e-28
Identity = 77/108 (71.30%), Postives = 86/108 (79.63%), Query Frame = 1 

Query: 1   MCLQLVSHRISSAPSNSYRHTAQLSAAAWGTSENFTTGRNSRRSTAEAGGFKGNPTSGET 60
           MCLQ VSHRISSAPSNSY+ TA LS   +G SENFTTGR+SRRS A+ GG +GN +SG  
Sbjct: 1   MCLQFVSHRISSAPSNSYKQTAHLSGG-FGRSENFTTGRSSRRSRADGGGLRGNWSSGGR 60

Query: 61  AASEWRNSGRPRRRNRYRIRRLSKSRRESKWRNIVGKKTSVQPTGKPI 109
             SE RNSGRPRRR R R+R L  SRRE +WRN+VGKKTSVQPTGKPI
Sbjct: 61  L-SEGRNSGRPRRRKRERMRNLRTSRRERRWRNMVGKKTSVQPTGKPI 106

The following BLAST results are available for this feature:
BLAST of CmaCh08G008940 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh08G008940 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KA13_CUCSA5.2e-2871.30Uncharacterized protein OS=Cucumis sativus GN=Csa_6G006700 PE=4 SV=1[more]
BLAST of CmaCh08G008940 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh08G008940 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190480|gb|KGN45684.1|7.5e-2871.30hypothetical protein Csa_6G006700 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh08G008940.1CmaCh08G008940.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh08G008940CsGy6G000780Cucumber (Gy14) v2cgybcmaB873
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh08G008940Cucumber (Chinese Long) v3cmacucB1055
CmaCh08G008940Cucumber (Chinese Long) v3cmacucB1064
CmaCh08G008940Cucumber (Chinese Long) v3cmacucB1073
CmaCh08G008940Watermelon (97103) v2cmawmbB917
CmaCh08G008940Wax gourdcmawgoB1100
CmaCh08G008940Cucurbita maxima (Rimu)cmacmaB385
CmaCh08G008940Cucurbita maxima (Rimu)cmacmaB359
CmaCh08G008940Cucumber (Gy14) v1cgycmaB0380
CmaCh08G008940Cucurbita moschata (Rifu)cmacmoB886
CmaCh08G008940Cucurbita moschata (Rifu)cmacmoB898
CmaCh08G008940Cucurbita moschata (Rifu)cmacmoB912
CmaCh08G008940Wild cucumber (PI 183967)cmacpiB925
CmaCh08G008940Cucumber (Chinese Long) v2cmacuB905
CmaCh08G008940Melon (DHL92) v3.5.1cmameB821
CmaCh08G008940Watermelon (Charleston Gray)cmawcgB800
CmaCh08G008940Watermelon (97103) v1cmawmB880
CmaCh08G008940Cucurbita pepo (Zucchini)cmacpeB904
CmaCh08G008940Cucurbita pepo (Zucchini)cmacpeB916
CmaCh08G008940Bottle gourd (USVL1VR-Ls)cmalsiB817
CmaCh08G008940Bottle gourd (USVL1VR-Ls)cmalsiB836
CmaCh08G008940Bottle gourd (USVL1VR-Ls)cmalsiB842
CmaCh08G008940Cucumber (Gy14) v2cgybcmaB458
CmaCh08G008940Cucumber (Gy14) v2cgybcmaB463
CmaCh08G008940Melon (DHL92) v3.6.1cmamedB919
CmaCh08G008940Melon (DHL92) v3.6.1cmamedB952
CmaCh08G008940Silver-seed gourdcarcmaB0097
CmaCh08G008940Silver-seed gourdcarcmaB0842