CsGy5G024460 (gene) Cucumber (Gy14) v2

Overview
NameCsGy5G024460
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUnknown Protein
LocationChr5 : 29081346 .. 29082532 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCCCTTTCCACTCCAATGGAGTAAACTCGCCGGACCAGGATGAAGATCCCTACAAACCCCTTTCAAATTATCCCACCCAACCCATGTTGGTTCCATCGATGCTCAACTCCTTCAACATCCCCTGCAAAAACAAGCAAAAATGGAGGCAACGATCCCAGTTCATAAATTCTGTTCTTCTTCTGAATCTTCATCCATTTATCAAGCCTCTCCGTGTATTTCCCTTCCCTCCATTTCCCCAAATCGATCACCATCACCCCTGTGTTGAAATAACACGCTCTCCGCCCTTCAAACGCCGCCGCATATTCTGAATTCATCCAGAATTTCGCCGTGAAGTAGTTCGTAAAATTCGCATGGCAATACTCCGGCGCTCCCAACACGTGATTCCCTAAATTTATCTTCCATAGCTTCGCTACGTCGTCCACCACTACCAGATCTGAATCGAAGTAAATGATTCGATTAACGGTGACAGGTAATAGTTCTGCTAAGTACATTCTCGCGTAATTCAATGGCTGATCTAGAGCTCGTCGAACTGAGTAGGTGATTTTTCCTCTCACGAGATTTGAATCAAAATGGTAAAGATGGAAATTCAGGTAAGGAAATGTAGTGGTGATGACGCGTCGTAGCTCTAAACGACGGTGCGTGACAATAAAGTGAAACACTATGTTTTCCGGGCAGGATGAGTGCTGAAGTACTGAAAATACTCCAGCTACTGATCCTCGGAGATAGGTAGCGTCTAAAGTCATGGCGATATGGATAACGGAAGGCTTCATCGTCCTTTGACATTCCCGGCCGTTTTGGAATGCCGGTGCTTCTCTAAAAAGCGGCAACTCGGCGGATACGACCGTCGAGGGGAAGCGTACGGTGAGGGCAAGGAAGAAGAGTAAAACCAGAAAAGCCATTAGGGCAAATATTTTTCCTTCTGGGAGGAAGAGGAAAAGGAAAAGGAAAAGGAAAGGTAGACGAAGGCTTTGAGAAGAAGAGAGGGGTAAATTGGGAATTTAGAGTAAAATTACTTTTTTGGTGGGGCCGGAATATTAAACGGACAAAAGAAGCCAGGCTGGCATTTAAACATCGCCGTGACTGCAGTCGGGTTTTTATTTCGTGTGGACGCGCCTACACATTCCCTTTCGTGAAAGAGCCGCACGATCCATCGGATGATGGGAACAAATTTGAGAGGTAG

mRNA sequence

ATGGCTTCCCCTTTCCACTCCAATGGAGTAAACTCGCCGGACCAGGATGAAGATCCCTACAAACCCCTTTCAAATTATCCCACCCAACCCATGTTGGTTCCATCGATGCTCAACTCCTTCAACATCCCCTGCAAAAACAAGCAAAAATGGAGGCAACGATCCCAGTTCATAAATTCTGTTCTTCTTCTGAATCTTCATCCATTTATCAAGCCTCTCCGTGTAATAGTTCTGCTAAGTACATTCTCGCGTAATTCAATGGCTGATCTAGAGCTCGTCGAACTGAGTAGGATGAGTGCTGAAGTACTGAAAATACTCCAGCTACTGATCCTCGGAGATAGTCGGGTTTTTATTTCGTGTGGACGCGCCTACACATTCCCTTTCGTGAAAGAGCCGCACGATCCATCGGATGATGGGAACAAATTTGAGAGGTAG

Coding sequence (CDS)

ATGGCTTCCCCTTTCCACTCCAATGGAGTAAACTCGCCGGACCAGGATGAAGATCCCTACAAACCCCTTTCAAATTATCCCACCCAACCCATGTTGGTTCCATCGATGCTCAACTCCTTCAACATCCCCTGCAAAAACAAGCAAAAATGGAGGCAACGATCCCAGTTCATAAATTCTGTTCTTCTTCTGAATCTTCATCCATTTATCAAGCCTCTCCGTGTAATAGTTCTGCTAAGTACATTCTCGCGTAATTCAATGGCTGATCTAGAGCTCGTCGAACTGAGTAGGATGAGTGCTGAAGTACTGAAAATACTCCAGCTACTGATCCTCGGAGATAGTCGGGTTTTTATTTCGTGTGGACGCGCCTACACATTCCCTTTCGTGAAAGAGCCGCACGATCCATCGGATGATGGGAACAAATTTGAGAGGTAG

Protein sequence

MASPFHSNGVNSPDQDEDPYKPLSNYPTQPMLVPSMLNSFNIPCKNKQKWRQRSQFINSVLLLNLHPFIKPLRVIVLLSTFSRNSMADLELVELSRMSAEVLKILQLLILGDSRVFISCGRAYTFPFVKEPHDPSDDGNKFER
Homology
[Close]
BLAST of CsGy5G024460 vs. NCBI nr
Match: RDX90673.1 (hypothetical protein CR513_27443, partial [Mucuna pruriens])

HSP 1 Score: 58.5 bits (140), Expect = 2.1e-05
Identity = 41/114 (35.96%), Postives = 62/114 (54.39%), Query Frame = 0 

Query: 22  PLSNYPTQPMLVPSMLNSFNIPCKNKQKWRQRSQFINSVLLLNLHPFIKPLRVIVLLSTF 81
           P++  P++P+LVP M+N  NIP ++KQK RQR+Q +N +L L  HP + PL ++ L    
Sbjct: 70  PVNVIPSEPVLVPPMINGLNIPREDKQKRRQRTQLVNPLLSLQFHPVLDPLPIVPLPPPH 129

Query: 82  S-RNSMADLELVELSRMSAEVLKILQLLILGDSRVFISCGRAYTFPFVKEPHDP 135
              +    +E+  LS     V+  L   +  + RV I  GRA     V+E H P
Sbjct: 130 QIHHHHPRVEITRLSGREHTVVPELVREVFSEVRVAI-LGRA-DHARVREWHAP 181

[Close]
BLAST of CsGy5G024460 vs. NCBI nr
Match: KYP65930.1 (hypothetical protein KK1_012206 [Cajanus cajan])

HSP 1 Score: 53.5 bits (127), Expect = 6.7e-04
Identity = 37/99 (37.37%), Postives = 49/99 (49.49%), Query Frame = 0 

Query: 19  PYKPLSNYPTQPMLVPSMLNSFNIPCKNKQKWRQRSQFINSVLLLNLHPFIKPLRVIVLL 78
           P   +   PT+PMLVP M+NS NI  KNKQK RQR Q +N +L L  HP         +L
Sbjct: 68  PTNTIDVVPTKPMLVPPMVNSLNIARKNKQKRRQRPQLVNPLLPLEFHP---------VL 127

Query: 79  STFSRNSMADLELVELSRMSAEVLKILQLLILGDSRVFI 118
               +  ++    V       EV + L   +LG+ RV I
Sbjct: 128 DFLPKVPLSPPHQVHHHHPRVEVARELVREVLGEVRVAI 157

[Close]
BLAST of CsGy5G024460 vs. TrEMBL
Match: tr|A0A2P2P5X9|A0A2P2P5X9_RHIMU (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.4e-04
Identity = 29/66 (43.94%), Postives = 40/66 (60.61%), Query Frame = 0 

Query: 19 PYKPLSNYPTQPMLVPSMLNSFNIPCKNKQKWRQRSQFINSVLLLNLHPFIKPLRVIVLL 78
          P KP      +PMLVP++++   +PCKNKQ  R R++ ++   LL LHPF   LRVI L 
Sbjct: 12 PAKPSIIVTAEPMLVPTVIDRGYVPCKNKQDRRLRAELVDPNPLLQLHPFDDLLRVIALS 71

Query: 79 STFSRN 85
           +F  N
Sbjct: 72 PSFQIN 77

[Close]
BLAST of CsGy5G024460 vs. TrEMBL
Match: tr|A0A151TFV8|A0A151TFV8_CAJCA (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_012206 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.5e-04
Identity = 37/99 (37.37%), Postives = 49/99 (49.49%), Query Frame = 0 

Query: 19  PYKPLSNYPTQPMLVPSMLNSFNIPCKNKQKWRQRSQFINSVLLLNLHPFIKPLRVIVLL 78
           P   +   PT+PMLVP M+NS NI  KNKQK RQR Q +N +L L  HP         +L
Sbjct: 68  PTNTIDVVPTKPMLVPPMVNSLNIARKNKQKRRQRPQLVNPLLPLEFHP---------VL 127

Query: 79  STFSRNSMADLELVELSRMSAEVLKILQLLILGDSRVFI 118
               +  ++    V       EV + L   +LG+ RV I
Sbjct: 128 DFLPKVPLSPPHQVHHHHPRVEVARELVREVLGEVRVAI 157

The following BLAST results are available for this feature:
BLAST of CsGy5G024460 vs. NCBI nr
Match NameE-valueIdentityDescription
RDX90673.12.1e-0535.96hypothetical protein CR513_27443, partial [Mucuna pruriens][more]
KYP65930.16.7e-0437.37hypothetical protein KK1_012206 [Cajanus cajan][more]
BLAST of CsGy5G024460 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy5G024460 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy5G024460 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A2P2P5X9|A0A2P2P5X9_RHIMU3.4e-0443.94Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1[more]
tr|A0A151TFV8|A0A151TFV8_CAJCA4.5e-0437.37Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_012206 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy5G024460.1CsGy5G024460.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy5G024460CmoCh04G015900Cucurbita moschata (Rifu)cgybcmoB632
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy5G024460Cucumber (Chinese Long) v3cgybcucB200
CsGy5G024460Cucumber (Chinese Long) v3cgybcucB201
CsGy5G024460Cucumber (Chinese Long) v3cgybcucB232
CsGy5G024460Watermelon (97103) v2cgybwmbB359
CsGy5G024460Watermelon (97103) v2cgybwmbB365
CsGy5G024460Watermelon (97103) v2cgybwmbB372
CsGy5G024460Wax gourdcgybwgoB458
CsGy5G024460Wax gourdcgybwgoB486
CsGy5G024460Cucumber (Gy14) v2cgybcgybB027
CsGy5G024460Cucumber (Gy14) v2cgybcgybB028
CsGy5G024460Cucurbita maxima (Rimu)cgybcmaB583
CsGy5G024460Cucurbita maxima (Rimu)cgybcmaB585
CsGy5G024460Cucurbita maxima (Rimu)cgybcmaB595
CsGy5G024460Cucurbita maxima (Rimu)cgybcmaB626
CsGy5G024460Cucurbita maxima (Rimu)cgybcmaB655
CsGy5G024460Cucurbita maxima (Rimu)cgybcmaB657
CsGy5G024460Cucurbita maxima (Rimu)cgybcmaB672
CsGy5G024460Cucurbita moschata (Rifu)cgybcmoB555
CsGy5G024460Cucurbita moschata (Rifu)cgybcmoB557
CsGy5G024460Cucurbita moschata (Rifu)cgybcmoB566
CsGy5G024460Cucurbita moschata (Rifu)cgybcmoB603
CsGy5G024460Cucurbita moschata (Rifu)cgybcmoB637
CsGy5G024460Cucurbita moschata (Rifu)cgybcmoB650
CsGy5G024460Cucurbita moschata (Rifu)cgybcmoB668
CsGy5G024460Cucurbita pepo (Zucchini)cgybcpeB581
CsGy5G024460Cucurbita pepo (Zucchini)cgybcpeB621
CsGy5G024460Cucurbita pepo (Zucchini)cgybcpeB633
CsGy5G024460Cucurbita pepo (Zucchini)cgybcpeB640
CsGy5G024460Cucurbita pepo (Zucchini)cgybcpeB648
CsGy5G024460Cucurbita pepo (Zucchini)cgybcpeB682
CsGy5G024460Cucumber (Chinese Long) v2cgybcuB196
CsGy5G024460Cucumber (Chinese Long) v2cgybcuB199
CsGy5G024460Cucumber (Chinese Long) v2cgybcuB223
CsGy5G024460Bottle gourd (USVL1VR-Ls)cgyblsiB315
CsGy5G024460Bottle gourd (USVL1VR-Ls)cgyblsiB337
CsGy5G024460Bottle gourd (USVL1VR-Ls)cgyblsiB349
CsGy5G024460Melon (DHL92) v3.5.1cgybmeB319
CsGy5G024460Melon (DHL92) v3.5.1cgybmeB334
CsGy5G024460Melon (DHL92) v3.5.1cgybmeB336
CsGy5G024460Melon (DHL92) v3.6.1cgybmedB318
CsGy5G024460Melon (DHL92) v3.6.1cgybmedB337
CsGy5G024460Watermelon (Charleston Gray)cgybwcgB354
CsGy5G024460Watermelon (Charleston Gray)cgybwcgB359
CsGy5G024460Watermelon (Charleston Gray)cgybwcgB365
CsGy5G024460Watermelon (97103) v1cgybwmB377
CsGy5G024460Watermelon (97103) v1cgybwmB398
CsGy5G024460Watermelon (97103) v1cgybwmB412
CsGy5G024460Silver-seed gourdcarcgybB0473
CsGy5G024460Wild cucumber (PI 183967)cgybcpiB200
CsGy5G024460Wild cucumber (PI 183967)cgybcpiB201
CsGy5G024460Wild cucumber (PI 183967)cgybcpiB225
CsGy5G024460Silver-seed gourdcarcgybB0598
CsGy5G024460Silver-seed gourdcarcgybB0831
CsGy5G024460Silver-seed gourdcarcgybB0835
CsGy5G024460Silver-seed gourdcarcgybB1026