CmoCh04G015900 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G015900
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr04 : 8104260 .. 8104658 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGATTCCTACAAACCCCTTTCAGATTATCCCCGCCCAGCCCATGTTGGTTCCACCGGTGCGCTACTCCTTCCACATCGCCAGCAAAAACGAGCAAAAATGGAGGCAGCGATCCCAACTCATAAATTCTGTTCCTCTTCTGAATCCTCATCCATTTCTCCAACCTTTCCGTGTACTTCCCTTCCCTCCATTTCTCCAAATCGATAACCATCACCCCTGTGTTGAAATAGCACGCTTTCCGCCCCTTGAACGCCGCCGCGTGTTCCGAATTCAACCAGAATTTCGGGGTGAAGTAATTCGTGAAATTTGCATGGCAATACTCCGGCGCTCCCAGCACGTGATTCCCCAAATTGATTTTCCAAAGCTTCGCTACATCGTCCACCACCACCAGATCTGA

mRNA sequence

ATGAAGATTCCTACAAACCCCTTTCAGATTATCCCCGCCCAGCCCATGTTGGTTCCACCGGTGCGCTACTCCTTCCACATCGCCAGCAAAAACGAGCAAAAATGGAGGCAGCGATCCCAACTCATAAATTCTGTTCCTCTTCTGAATCCTCATCCATTTCTCCAACCTTTCCGTGTACTTCCCTTCCCTCCATTTCTCCAAATCGATAACCATCACCCCTGTGTTGAAATAGCACGCTTTCCGCCCCTTGAACGCCGCCGCGTGTTCCGAATTCAACCAGAATTTCGGGGTGAAGTAATTCGTGAAATTTGCATGGCAATACTCCGGCGCTCCCAGCACGTGATTCCCCAAATTGATTTTCCAAAGCTTCGCTACATCGTCCACCACCACCAGATCTGA

Coding sequence (CDS)

ATGAAGATTCCTACAAACCCCTTTCAGATTATCCCCGCCCAGCCCATGTTGGTTCCACCGGTGCGCTACTCCTTCCACATCGCCAGCAAAAACGAGCAAAAATGGAGGCAGCGATCCCAACTCATAAATTCTGTTCCTCTTCTGAATCCTCATCCATTTCTCCAACCTTTCCGTGTACTTCCCTTCCCTCCATTTCTCCAAATCGATAACCATCACCCCTGTGTTGAAATAGCACGCTTTCCGCCCCTTGAACGCCGCCGCGTGTTCCGAATTCAACCAGAATTTCGGGGTGAAGTAATTCGTGAAATTTGCATGGCAATACTCCGGCGCTCCCAGCACGTGATTCCCCAAATTGATTTTCCAAAGCTTCGCTACATCGTCCACCACCACCAGATCTGA
Homology
[Close]
BLAST of CmoCh04G015900 vs. TrEMBL
Match: A0A151TFV8_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_012206 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 5.7e-16
Identity = 55/133 (41.35%), Postives = 75/133 (56.39%), Query Frame = 1 

Query: 1   MKIPTNPFQIIPAQPMLVPPVRYSFHIASKNEQKWRQRSQLINSVPLLNPHPFLQPFRVL 60
           MK PTN   ++P +PMLVPP+  S +IA KN+QK RQR QL+N +  L  HP L     +
Sbjct: 65  MKGPTNTIDVVPTKPMLVPPMVNSLNIARKNKQKRRQRPQLVNPLLPLEFHPVLDFLPKV 124

Query: 61  PFPPFLQIDNHHPCVEIARFPPLERRRVFRIQPEFRGEVIREICMAILRRSQHVIP-QID 120
           P  P  Q+ +HHP VE+AR              E   EV+ E+ +AILRR+ H  P +  
Sbjct: 125 PLSPPHQVHHHHPRVEVAR--------------ELVREVLGEVRVAILRRADHARPCECH 183

Query: 121 FPKLRYIVHHHQI 133
            P+L Y+V H  +
Sbjct: 185 APELAYVVDHDHV 183

[Close]
BLAST of CmoCh04G015900 vs. TrEMBL
Match: C4IZX9_MAIZE (Uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 5.9e-13
Identity = 44/132 (33.33%), Postives = 76/132 (57.58%), Query Frame = 1 

Query: 1   MKIPTNPFQIIPAQPMLVPPVRYSFHIASKNEQKWRQRSQLINSVPLLNPHPFLQPFRVL 60
           M+ P     ++ A+P+LVPPV +   +A ++EQ+  QR+++++  PLL+ HP L P RV 
Sbjct: 1   METPAAALDVVAAEPVLVPPVVHRPDVAGEDEQERWQRAEVVDPPPLLHGHPLLHPARVP 60

Query: 61  PFPPFLQIDNHHPCVEIARFPPLERRRVFRIQPEFRGEVIREICMAILRRSQHVIPQIDF 120
              P + + +H   VE+A   P+E     R++PE   EV+ E+ +A+L R  HV  ++  
Sbjct: 61  AGAPLVDVHDHDARVEVAWAAPVEGAVERRVRPEGVREVVAEVGVAVLGRRHHVAREVHG 120

Query: 121 PKLRYIVHHHQI 133
            +   +VHH  +
Sbjct: 121 RQRPDVVHHDHV 132

[Close]
BLAST of CmoCh04G015900 vs. TrEMBL
Match: A0A067H9W7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031748mg PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.9e-12
Identity = 41/86 (47.67%), Postives = 59/86 (68.60%), Query Frame = 1 

Query: 1   MKIPTNPFQIIPAQPMLVPPVRYSFHIASKNEQKWRQRSQLINSVPLLNPHPFLQPFRVL 60
           M+IPT   +II A+ +LVP +    ++A K++Q+ RQR+QL+ S PLL  HPF    RV+
Sbjct: 68  MQIPTKTSEIISAKAVLVPAMINRRYVACKDQQEGRQRTQLVYSHPLLQLHPFFNLGRVI 127

Query: 61  PFPPFLQIDNHHPCVEIARFPPLERR 87
           P PP ++I +HHP VE+AR P  ER+
Sbjct: 128 PRPPSIKIYHHHPRVEVARLPVRERQ 153

[Close]
BLAST of CmoCh04G015900 vs. TrEMBL
Match: A0A0P0WD07_ORYSJ (Os04g0530801 protein (Fragment) OS=Oryza sativa subsp. japonica GN=Os04g0530801 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 5.1e-09
Identity = 44/111 (39.64%), Postives = 69/111 (62.16%), Query Frame = 1 

Query: 1   MKIPTNPFQIIPAQPMLVPPVRYSFHIASKNEQKWRQRSQLI-NSVPLLNPHPFLQPFRV 60
           +K+P  P  ++ A+P+LVPPV +  H+A +++++ R+R QL+   + LL+ HP LQ   V
Sbjct: 45  VKLPALPRDVVAAEPVLVPPVLHGLHLAGEHQEERRERPQLVYPGLLLLDLHPVLQLHGV 104

Query: 61  LPFPPFLQIDNHHPCVEIA-RFPPL-ERRRVFRIQPEFRGEVIREICMAIL 109
               P +Q+D+H   VE+A R PP+ E   V  + PE  GEV  E+ +AIL
Sbjct: 105 PAGSPPVQVDDHDAGVEVARRAPPVGEDGGVLGVTPERVGEVGGEVGVAIL 155

[Close]
BLAST of CmoCh04G015900 vs. TrEMBL
Match: A0A0P0VX81_ORYSJ (Os03g0300801 protein (Fragment) OS=Oryza sativa subsp. japonica GN=Os03g0300801 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 6.7e-09
Identity = 43/125 (34.40%), Postives = 73/125 (58.40%), Query Frame = 1 

Query: 10  IIPAQPMLVPPVRYSFHIASKNEQKWRQRSQLINSVP--LLNPHPFLQPFRVLPFPPFLQ 69
           ++ A+ +LVPPV    H+  +++Q+ RQR +L+++    LL  HP L   RV   PP  +
Sbjct: 85  VVAAEAVLVPPVLDRRHVPREHQQEGRQRPELVDAPRRRLLYLHPPLDAPRVARPPPPGE 144

Query: 70  IDNHHPCVEIARFPPLERRRVFRIQPEFRGEVIREICMAILRRSQHVIPQIDFPKLRYIV 129
           +++H   VE+AR  P ER     ++PE  GEV+ E+ +A+LRR+     ++  P+L  IV
Sbjct: 145 VEHHDARVEVARPAPRERPGELLVRPEPVGEVLGEVRVAVLRRADGAAAEVGAPELGDIV 204

Query: 130 HHHQI 133
              ++
Sbjct: 205 DDDEV 209

[Close]
BLAST of CmoCh04G015900 vs. NCBI nr
Match: gi|1012354743|gb|KYP65930.1| (hypothetical protein KK1_012206 [Cajanus cajan])

HSP 1 Score: 92.0 bits (227), Expect = 8.1e-16
Identity = 55/133 (41.35%), Postives = 75/133 (56.39%), Query Frame = 1 

Query: 1   MKIPTNPFQIIPAQPMLVPPVRYSFHIASKNEQKWRQRSQLINSVPLLNPHPFLQPFRVL 60
           MK PTN   ++P +PMLVPP+  S +IA KN+QK RQR QL+N +  L  HP L     +
Sbjct: 65  MKGPTNTIDVVPTKPMLVPPMVNSLNIARKNKQKRRQRPQLVNPLLPLEFHPVLDFLPKV 124

Query: 61  PFPPFLQIDNHHPCVEIARFPPLERRRVFRIQPEFRGEVIREICMAILRRSQHVIP-QID 120
           P  P  Q+ +HHP VE+AR              E   EV+ E+ +AILRR+ H  P +  
Sbjct: 125 PLSPPHQVHHHHPRVEVAR--------------ELVREVLGEVRVAILRRADHARPCECH 183

Query: 121 FPKLRYIVHHHQI 133
            P+L Y+V H  +
Sbjct: 185 APELAYVVDHDHV 183

[Close]
BLAST of CmoCh04G015900 vs. NCBI nr
Match: gi|238006888|gb|ACR34479.1| (unknown [Zea mays])

HSP 1 Score: 82.0 bits (201), Expect = 8.4e-13
Identity = 44/132 (33.33%), Postives = 76/132 (57.58%), Query Frame = 1 

Query: 1   MKIPTNPFQIIPAQPMLVPPVRYSFHIASKNEQKWRQRSQLINSVPLLNPHPFLQPFRVL 60
           M+ P     ++ A+P+LVPPV +   +A ++EQ+  QR+++++  PLL+ HP L P RV 
Sbjct: 1   METPAAALDVVAAEPVLVPPVVHRPDVAGEDEQERWQRAEVVDPPPLLHGHPLLHPARVP 60

Query: 61  PFPPFLQIDNHHPCVEIARFPPLERRRVFRIQPEFRGEVIREICMAILRRSQHVIPQIDF 120
              P + + +H   VE+A   P+E     R++PE   EV+ E+ +A+L R  HV  ++  
Sbjct: 61  AGAPLVDVHDHDARVEVAWAAPVEGAVERRVRPEGVREVVAEVGVAVLGRRHHVAREVHG 120

Query: 121 PKLRYIVHHHQI 133
            +   +VHH  +
Sbjct: 121 RQRPDVVHHDHV 132

[Close]
BLAST of CmoCh04G015900 vs. NCBI nr
Match: gi|641865741|gb|KDO84426.1| (hypothetical protein CISIN_1g031748mg [Citrus sinensis])

HSP 1 Score: 79.7 bits (195), Expect = 4.2e-12
Identity = 41/86 (47.67%), Postives = 59/86 (68.60%), Query Frame = 1 

Query: 1   MKIPTNPFQIIPAQPMLVPPVRYSFHIASKNEQKWRQRSQLINSVPLLNPHPFLQPFRVL 60
           M+IPT   +II A+ +LVP +    ++A K++Q+ RQR+QL+ S PLL  HPF    RV+
Sbjct: 68  MQIPTKTSEIISAKAVLVPAMINRRYVACKDQQEGRQRTQLVYSHPLLQLHPFFNLGRVI 127

Query: 61  PFPPFLQIDNHHPCVEIARFPPLERR 87
           P PP ++I +HHP VE+AR P  ER+
Sbjct: 128 PRPPSIKIYHHHPRVEVARLPVRERQ 153

[Close]
BLAST of CmoCh04G015900 vs. NCBI nr
Match: gi|937915292|dbj|BAS90211.1| (Os04g0530801, partial [Oryza sativa Japonica Group])

HSP 1 Score: 68.9 bits (167), Expect = 7.4e-09
Identity = 44/111 (39.64%), Postives = 69/111 (62.16%), Query Frame = 1 

Query: 1   MKIPTNPFQIIPAQPMLVPPVRYSFHIASKNEQKWRQRSQLI-NSVPLLNPHPFLQPFRV 60
           +K+P  P  ++ A+P+LVPPV +  H+A +++++ R+R QL+   + LL+ HP LQ   V
Sbjct: 45  VKLPALPRDVVAAEPVLVPPVLHGLHLAGEHQEERRERPQLVYPGLLLLDLHPVLQLHGV 104

Query: 61  LPFPPFLQIDNHHPCVEIA-RFPPL-ERRRVFRIQPEFRGEVIREICMAIL 109
               P +Q+D+H   VE+A R PP+ E   V  + PE  GEV  E+ +AIL
Sbjct: 105 PAGSPPVQVDDHDAGVEVARRAPPVGEDGGVLGVTPERVGEVGGEVGVAIL 155

[Close]
BLAST of CmoCh04G015900 vs. NCBI nr
Match: gi|937908845|dbj|BAS83765.1| (Os03g0300801, partial [Oryza sativa Japonica Group])

HSP 1 Score: 68.6 bits (166), Expect = 9.6e-09
Identity = 43/125 (34.40%), Postives = 73/125 (58.40%), Query Frame = 1 

Query: 10  IIPAQPMLVPPVRYSFHIASKNEQKWRQRSQLINSVP--LLNPHPFLQPFRVLPFPPFLQ 69
           ++ A+ +LVPPV    H+  +++Q+ RQR +L+++    LL  HP L   RV   PP  +
Sbjct: 85  VVAAEAVLVPPVLDRRHVPREHQQEGRQRPELVDAPRRRLLYLHPPLDAPRVARPPPPGE 144

Query: 70  IDNHHPCVEIARFPPLERRRVFRIQPEFRGEVIREICMAILRRSQHVIPQIDFPKLRYIV 129
           +++H   VE+AR  P ER     ++PE  GEV+ E+ +A+LRR+     ++  P+L  IV
Sbjct: 145 VEHHDARVEVARPAPRERPGELLVRPEPVGEVLGEVRVAVLRRADGAAAEVGAPELGDIV 204

Query: 130 HHHQI 133
              ++
Sbjct: 205 DDDEV 209

The following BLAST results are available for this feature:
BLAST of CmoCh04G015900 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh04G015900 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A151TFV8_CAJCA5.7e-1641.35Uncharacterized protein OS=Cajanus cajan GN=KK1_012206 PE=4 SV=1[more]
C4IZX9_MAIZE5.9e-1333.33Uncharacterized protein OS=Zea mays PE=2 SV=1[more]
A0A067H9W7_CITSI2.9e-1247.67Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031748mg PE=4 SV=1[more]
A0A0P0WD07_ORYSJ5.1e-0939.64Os04g0530801 protein (Fragment) OS=Oryza sativa subsp. japonica GN=Os04g0530801 ... [more]
A0A0P0VX81_ORYSJ6.7e-0934.40Os03g0300801 protein (Fragment) OS=Oryza sativa subsp. japonica GN=Os03g0300801 ... [more]
BLAST of CmoCh04G015900 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh04G015900 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|1012354743|gb|KYP65930.1|8.1e-1641.35hypothetical protein KK1_012206 [Cajanus cajan][more]
gi|238006888|gb|ACR34479.1|8.4e-1333.33unknown [Zea mays][more]
gi|641865741|gb|KDO84426.1|4.2e-1247.67hypothetical protein CISIN_1g031748mg [Citrus sinensis][more]
gi|937915292|dbj|BAS90211.1|7.4e-0939.64Os04g0530801, partial [Oryza sativa Japonica Group][more]
gi|937908845|dbj|BAS83765.1|9.6e-0934.40Os03g0300801, partial [Oryza sativa Japonica Group][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000048IQ_motif_EF-hand-BS
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G015900.1CmoCh04G015900.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000048IQ motif, EF-hand binding sitePROFILEPS50096IQcoord: 84..113
score:

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G015900CsGy5G024460Cucumber (Gy14) v2cgybcmoB632
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G015900Watermelon (97103) v2cmowmbB729
CmoCh04G015900Watermelon (97103) v2cmowmbB738
CmoCh04G015900Watermelon (97103) v2cmowmbB745
CmoCh04G015900Wax gourdcmowgoB0847
CmoCh04G015900Wax gourdcmowgoB0892
CmoCh04G015900Wax gourdcmowgoB0908
CmoCh04G015900Cucurbita moschata (Rifu)cmocmoB126
CmoCh04G015900Cucurbita moschata (Rifu)cmocmoB336
CmoCh04G015900Cucurbita moschata (Rifu)cmocmoB342
CmoCh04G015900Cucurbita moschata (Rifu)cmocmoB467
CmoCh04G015900Cucumber (Gy14) v1cgycmoB0776
CmoCh04G015900Cucumber (Gy14) v1cgycmoB0799
CmoCh04G015900Cucumber (Gy14) v1cgycmoB0793
CmoCh04G015900Cucurbita maxima (Rimu)cmacmoB424
CmoCh04G015900Cucurbita maxima (Rimu)cmacmoB420
CmoCh04G015900Cucurbita maxima (Rimu)cmacmoB738
CmoCh04G015900Cucurbita maxima (Rimu)cmacmoB728
CmoCh04G015900Wild cucumber (PI 183967)cmocpiB729
CmoCh04G015900Wild cucumber (PI 183967)cmocpiB745
CmoCh04G015900Cucumber (Chinese Long) v2cmocuB679
CmoCh04G015900Cucumber (Chinese Long) v2cmocuB721
CmoCh04G015900Cucumber (Chinese Long) v2cmocuB729
CmoCh04G015900Melon (DHL92) v3.5.1cmomeB631
CmoCh04G015900Melon (DHL92) v3.5.1cmomeB650
CmoCh04G015900Watermelon (Charleston Gray)cmowcgB654
CmoCh04G015900Watermelon (Charleston Gray)cmowcgB663
CmoCh04G015900Watermelon (Charleston Gray)cmowcgB668
CmoCh04G015900Watermelon (97103) v1cmowmB693
CmoCh04G015900Watermelon (97103) v1cmowmB703
CmoCh04G015900Watermelon (97103) v1cmowmB740
CmoCh04G015900Cucurbita pepo (Zucchini)cmocpeB649
CmoCh04G015900Cucurbita pepo (Zucchini)cmocpeB651
CmoCh04G015900Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G015900Cucurbita pepo (Zucchini)cmocpeB702
CmoCh04G015900Bottle gourd (USVL1VR-Ls)cmolsiB660
CmoCh04G015900Bottle gourd (USVL1VR-Ls)cmolsiB675
CmoCh04G015900Bottle gourd (USVL1VR-Ls)cmolsiB686
CmoCh04G015900Cucumber (Gy14) v2cgybcmoB123
CmoCh04G015900Cucumber (Gy14) v2cgybcmoB650
CmoCh04G015900Melon (DHL92) v3.6.1cmomedB720
CmoCh04G015900Melon (DHL92) v3.6.1cmomedB740
CmoCh04G015900Melon (DHL92) v3.6.1cmomedB752
CmoCh04G015900Silver-seed gourdcarcmoB0814
CmoCh04G015900Silver-seed gourdcarcmoB1138
CmoCh04G015900Silver-seed gourdcarcmoB1396
CmoCh04G015900Silver-seed gourdcarcmoB1397
CmoCh04G015900Cucumber (Chinese Long) v3cmocucB0803
CmoCh04G015900Cucumber (Chinese Long) v3cmocucB0853