CsGy5G018340 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy5G018340
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	auxin-responsive protein SAUR71 isoform X1
Location	Chr5 : 24628541 .. 24631260 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTGGAAGAAGTTTACACCCACTTGCAAATCAAACCATGCATAATGAGAAGTTGTCAATTGACGTAGGAAAAATAAAAAAGAATTGATACAACGAGAGTGAGAGGGATTGGTAAAGGGAAGCGTTGAGGAGTTGTGGACAATAAGAAAATAGAGAAACAGAAAAGAAAAAGGAAAGGCAGTCCGAAAGGATCGGGAGAGAGGAGAGTGGTTTTTGTAACGCTCATTCCTCTCTTCCACATAAATATCCATTCTCTTCTTTCTTCTCTCTTCGGAATTTTCTCCTTCTGCTTTTCCCCCATTCATTCATTCATCTTCCTCCTTCCAATGCCTTTTCTTCCTCACCTTTTCACCTAAATGCTCTTCTTCTTCGCCGGTATTCTTCTTCTTCTTCTTTTTTCTTTCTTTTTACGCCTAATCTATATATGTTTTTTCATCTGATTTAGCCATTTCCTTCCTTTTTCAATGTCAATATCACTTTTCATCACGCCCAGTTCCTATTTTCTCAAAGGCCTTCTATTCTCTTACTTTGTTTTTCATATCTGATTTTCATGTTTGCGTTTTTTTCTTCTTTCTTCTTGTGTTTCAGACATTACTATCCAACAAATTGGGTTTTCTCCCCTTTTCTTTTCAATGAGTTGTAGGTTTAAAGCGTAACTAGATGACGTTTTAAGCGGATGACTCTTTTTTATCTTTTTGGATTAGAGGTGGTCCTCTGGAATTTTTCGATCCATTGTTTTGACTCATTCTCATAACGGAACTTGTATCTCCTGTTCTTGATGTTGTATGTACTTTTGATCTTTTTGCTGTTTCTTGCTTTACTTTACCATTTACACAACTGTTCTATTGCCAACAATTTTTAGCTGTACATTTTGTTATCTGAAACTAGGATTGCTGGATATGATTTTAATCCTAACCTTTGAAATGGATCATTTTGGGAATTGGTGATATGTTGTAGCATTAAAATGGGAAGTTCTTTTCCTTGTTTGTTCAATCATTTGTTTGGATTTAAGTGTGTAAATGATGAGAAGTAGTGAGCTGATGAGAATTGTGTTTGTGGAATTAGACACTGTGGATTCTGTGCTGGGGTTCTGTTGAATTGTGGTGAACGTTTAGAAATGGATGAAAATGGTGGGATCAAGATGGGAATCCGCCAGATTGTGAGGCTGAAAGAGACTCTCCAACACTGGCAAGGGGTCACAGTATGCCCGAAATCCAAAGCAGCAGCCCATGAAAACGGAAGCCAAAATCAAAATCAAAATCATGGGATCCTTTCACCGGCAATCAACAAAAGGCTGACGAATGTGTTGTGTTGTGATTCGGATGAGGAGACTTGCCAGAGCCCTGAGCACCCACCCGATGTTCCGAAAGGGTACTTGGCTGTTTATGTTGGGCCGGAGCTTCGGAGGTTTATCATTCCGACCAGCTATCTTAGGCATTCGGTGTTTAAGGTGTTGCTGGAAAAGGCAGAGGAGGAGTTTGGATTCGATCATAGCGGCGCGCTCACTTTTCCTTGCGAAATCGAGATCTTCAAATACCTTCTCAAGTGCATGGAGAGCCAGCAGAAGGATCATCCTGATGACCACACCCCAGGTTAACAACCATTTCTTTTGTTTGATGAAGTTCTTTTGGTGAATTCTTTTAGCATTATGATATGATGAACTGCACAAACATTACATTTAGAAGAAACTCGAAAATGGGGATTGGGGGCTTTGTTTGTGCAGCCATTTTGCTTACAAAATTGATGGTTAATTGACTTGGTTGAGTTCCTCAAGCTTGCCTTGTTCTATTTTGTTTTTTGAAGTTCTTGTAGTGAATTCTATTAGCATTATGATATAATGAACTGCTTGAACACTATATTTAGACGAAACTAGAAAATGGGGGCATGTGTTTGTTGTGTAGCCGTTTTGCTTACAAAGTTGATGGGTATTGACTTGAGTTCCTCAAATCTGCCAGATTATTCTCTTTTGTTTCTTGAACTTCTTGTAAGAACTCCATTAGTGTTAACCATGTTCAATTACAAATTAATTTGTTCCCTATGATTTGGAAAATATTAAAATCTAGTCCATATAATTTTAACAGTTAGAGTATAGTTCTCATGGTTTGATAAAGTCCTGATGAATAGTCCCTACCATACGTTTAATCAAACGAACTTAAAATTTTGTTCCAATCGTTTATAATTAGAACCTAGTGTTTTTCAAACTATAGGAACTTATTAATATAAAGGTCAATAACAAAATATGTATCTAGAAGAAGGTAAAATAGTTGTATTTATAGAGAAAGTTGATAATGTTTATTATGGACTTTGGTTGCAGCTGAGAGTTCGATGACTATGGAAGAATAAAAATGGTTGTGATCCACAGCAGGGGAGGGGGCTATATACAAAGACAAATTGATGTCATTGTGCCAGATTTCAGATAATGTTGTCAAATTGATGTGTTTACATTAGGGATGTGTTTAATTAGTTAGACAAAATCTGTGGAGGATGTGTGTGTCAGGCAGATTAAAAATCTACCCCTTTTTTTTCACTGTTCTTTTTTCTTTTTTCTTTTTTCTTTTTTCTTTTTTCTTTTTTTGGAATACCCTTTCAAGAGATGTGAACTTCAATTTGCTTCCCTGTATTTGAATGTGAAGCACATGATTGTTTGACCACACAGTATGGATTTTCTTGCATTGTTTTATTATTTTTTTTTAAAAAAAGTATTATGAAATTGAGGCCTAA

mRNA sequence

CTTGGAAGAAGTTTACACCCACTTGCAAATCAAACCATGCATAATGAGAAGTTGTCAATTGACGTAGGAAAAATAAAAAAGAATTGATACAACGAGAGTGAGAGGGATTGGTAAAGGGAAGCGTTGAGGAGTTGTGGACAATAAGAAAATAGAGAAACAGAAAAGAAAAAGGAAAGGCAGTCCGAAAGGATCGGGAGAGAGGAGAGTGGTTTTTGTAACGCTCATTCCTCTCTTCCACATAAATATCCATTCTCTTCTTTCTTCTCTCTTCGGAATTTTCTCCTTCTGCTTTTCCCCCATTCATTCATTCATCTTCCTCCTTCCAATGCCTTTTCTTCCTCACCTTTTCACCTAAATGCTCTTCTTCTTCGCCGAAATGGATGAAAATGGTGGGATCAAGATGGGAATCCGCCAGATTGTGAGGCTGAAAGAGACTCTCCAACACTGGCAAGGGGTCACAGTATGCCCGAAATCCAAAGCAGCAGCCCATGAAAACGGAAGCCAAAATCAAAATCAAAATCATGGGATCCTTTCACCGGCAATCAACAAAAGGCTGACGAATTATTATGAAATTGAGGCCTAA

Coding sequence (CDS)

ATGCTCTTCTTCTTCGCCGAAATGGATGAAAATGGTGGGATCAAGATGGGAATCCGCCAGATTGTGAGGCTGAAAGAGACTCTCCAACACTGGCAAGGGGTCACAGTATGCCCGAAATCCAAAGCAGCAGCCCATGAAAACGGAAGCCAAAATCAAAATCAAAATCATGGGATCCTTTCACCGGCAATCAACAAAAGGCTGACGAATTATTATGAAATTGAGGCCTAA

Protein sequence

MLFFFAEMDENGGIKMGIRQIVRLKETLQHWQGVTVCPKSKAAAHENGSQNQNQNHGILSPAINKRLTNYYEIEA

Homology

[Close]

BLAST of CsGy5G018340 vs. NCBI nr
Match: XP_008460569.1 (PREDICTED: auxin-responsive protein SAUR71 isoform X1 [Cucumis melo])

HSP 1 Score: 132.9 bits (333), Expect = 4.6e-28
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 7  EMDENGGIKMGIRQIVRLKETLQHWQGVTVCPKSKAAAHENGSQNQNQNHGILSPAINKR 66
          EMDENGGIKMGIRQIVRLKETLQHWQGVTVCPKSKAAAHENGSQNQNQNHGILSPAINKR
Sbjct: 19 EMDENGGIKMGIRQIVRLKETLQHWQGVTVCPKSKAAAHENGSQNQNQNHGILSPAINKR 78

Query: 67 LTN 70
          LTN
Sbjct: 79 LTN 81

[Close]

BLAST of CsGy5G018340 vs. NCBI nr
Match: XP_011655433.1 (PREDICTED: uncharacterized protein LOC101207913 [Cucumis sativus] >KGN51419.1 hypothetical protein Csa_5G534970 [Cucumis sativus])

HSP 1 Score: 131.0 bits (328), Expect = 1.7e-27
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 8  MDENGGIKMGIRQIVRLKETLQHWQGVTVCPKSKAAAHENGSQNQNQNHGILSPAINKRL 67
          MDENGGIKMGIRQIVRLKETLQHWQGVTVCPKSKAAAHENGSQNQNQNHGILSPAINKRL
Sbjct: 1  MDENGGIKMGIRQIVRLKETLQHWQGVTVCPKSKAAAHENGSQNQNQNHGILSPAINKRL 60

Query: 68 TN 70
          TN
Sbjct: 61 TN 62

[Close]

BLAST of CsGy5G018340 vs. NCBI nr
Match: XP_008460570.1 (PREDICTED: auxin-responsive protein SAUR71 isoform X2 [Cucumis melo])

HSP 1 Score: 131.0 bits (328), Expect = 1.7e-27
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 8  MDENGGIKMGIRQIVRLKETLQHWQGVTVCPKSKAAAHENGSQNQNQNHGILSPAINKRL 67
          MDENGGIKMGIRQIVRLKETLQHWQGVTVCPKSKAAAHENGSQNQNQNHGILSPAINKRL
Sbjct: 1  MDENGGIKMGIRQIVRLKETLQHWQGVTVCPKSKAAAHENGSQNQNQNHGILSPAINKRL 60

Query: 68 TN 70
          TN
Sbjct: 61 TN 62

[Close]

BLAST of CsGy5G018340 vs. NCBI nr
Match: XP_011651409.1 (PREDICTED: uncharacterized protein LOC105434886 [Cucumis sativus] >KGN57847.1 hypothetical protein Csa_3G346940 [Cucumis sativus])

HSP 1 Score: 131.0 bits (328), Expect = 1.7e-27
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 8  MDENGGIKMGIRQIVRLKETLQHWQGVTVCPKSKAAAHENGSQNQNQNHGILSPAINKRL 67
          MDENGGIKMGIRQIVRLKETLQHWQGVTVCPKSKAAAHENGSQNQNQNHGILSPAINKRL
Sbjct: 1  MDENGGIKMGIRQIVRLKETLQHWQGVTVCPKSKAAAHENGSQNQNQNHGILSPAINKRL 60

Query: 68 TN 70
          TN
Sbjct: 61 TN 62

[Close]

BLAST of CsGy5G018340 vs. NCBI nr
Match: XP_023539667.1 (uncharacterized protein LOC111800282 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 110.5 bits (275), Expect = 2.4e-21
Identity = 56/64 (87.50%), Postives = 59/64 (92.19%), Query Frame = 0


Query: 7  EMDENGGIKM-GIRQIVRLKETLQHWQGVTVCPKSKAAAHENGSQNQNQNHGILSPAINK 66
          EMDENGGIK+ GIRQIVRLKETLQHWQGVT+ P SKAAAHEN SQN NQN+GILSPAINK
Sbjct: 26 EMDENGGIKLTGIRQIVRLKETLQHWQGVTINPISKAAAHENQSQNLNQNNGILSPAINK 85

Query: 67 RLTN 70
          RLTN
Sbjct: 86 RLTN 89

[Close]

BLAST of CsGy5G018340 vs. TAIR10
Match: AT5G20810.2 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 57.4 bits (137), Expect = 4.4e-09
Identity = 34/61 (55.74%), Postives = 39/61 (63.93%), Query Frame = 0


Query: 8  MDENGGIKM-GIRQIVRLKETLQHWQGVTVCPKSKAAAHENGSQNQNQNHGILSPAINKR 67
          MDEN   K+ GIRQIVRLKE LQ WQ VT+ PKS+      G Q       ++SPAINKR
Sbjct: 1  MDENNAAKLTGIRQIVRLKEILQKWQTVTIGPKSEVPPLAAGKQAV----AMISPAINKR 57

[Close]

BLAST of CsGy5G018340 vs. TAIR10
Match: AT3G43120.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 54.3 bits (129), Expect = 3.8e-08
Identity = 31/61 (50.82%), Postives = 39/61 (63.93%), Query Frame = 0


Query: 8  MDENGGIKM-GIRQIVRLKETLQHWQGVTVCPKSKAAAHENGSQNQNQNHGILSPAINKR 67
          MDEN   K+ GI+QIVRLKE LQ WQ VT+  KS     ++G     ++  I+SP INKR
Sbjct: 1  MDENNAAKLTGIKQIVRLKEILQKWQTVTIGSKS-----DDGELGARKHTAIISPVINKR 56

[Close]

BLAST of CsGy5G018340 vs. TrEMBL
Match: tr|A0A1S3CCR9|A0A1S3CCR9_CUCME (auxin-responsive protein SAUR71 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499361 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 3.0e-28
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 7  EMDENGGIKMGIRQIVRLKETLQHWQGVTVCPKSKAAAHENGSQNQNQNHGILSPAINKR 66
          EMDENGGIKMGIRQIVRLKETLQHWQGVTVCPKSKAAAHENGSQNQNQNHGILSPAINKR
Sbjct: 19 EMDENGGIKMGIRQIVRLKETLQHWQGVTVCPKSKAAAHENGSQNQNQNHGILSPAINKR 78

Query: 67 LTN 70
          LTN
Sbjct: 79 LTN 81

[Close]

BLAST of CsGy5G018340 vs. TrEMBL
Match: tr|A0A1S3CD75|A0A1S3CD75_CUCME (auxin-responsive protein SAUR71 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499361 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.2e-27
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 8  MDENGGIKMGIRQIVRLKETLQHWQGVTVCPKSKAAAHENGSQNQNQNHGILSPAINKRL 67
          MDENGGIKMGIRQIVRLKETLQHWQGVTVCPKSKAAAHENGSQNQNQNHGILSPAINKRL
Sbjct: 1  MDENGGIKMGIRQIVRLKETLQHWQGVTVCPKSKAAAHENGSQNQNQNHGILSPAINKRL 60

Query: 68 TN 70
          TN
Sbjct: 61 TN 62

[Close]

BLAST of CsGy5G018340 vs. TrEMBL
Match: tr|A0A0A0KRA4|A0A0A0KRA4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G534970 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.2e-27
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 8  MDENGGIKMGIRQIVRLKETLQHWQGVTVCPKSKAAAHENGSQNQNQNHGILSPAINKRL 67
          MDENGGIKMGIRQIVRLKETLQHWQGVTVCPKSKAAAHENGSQNQNQNHGILSPAINKRL
Sbjct: 1  MDENGGIKMGIRQIVRLKETLQHWQGVTVCPKSKAAAHENGSQNQNQNHGILSPAINKRL 60

Query: 68 TN 70
          TN
Sbjct: 61 TN 62

[Close]

BLAST of CsGy5G018340 vs. TrEMBL
Match: tr|A0A0A0LB03|A0A0A0LB03_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G346940 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.2e-27
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 8  MDENGGIKMGIRQIVRLKETLQHWQGVTVCPKSKAAAHENGSQNQNQNHGILSPAINKRL 67
          MDENGGIKMGIRQIVRLKETLQHWQGVTVCPKSKAAAHENGSQNQNQNHGILSPAINKRL
Sbjct: 1  MDENGGIKMGIRQIVRLKETLQHWQGVTVCPKSKAAAHENGSQNQNQNHGILSPAINKRL 60

Query: 68 TN 70
          TN
Sbjct: 61 TN 62

[Close]

BLAST of CsGy5G018340 vs. TrEMBL
Match: tr|A0A2N9GWA0|A0A2N9GWA0_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS34518 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.6e-07
Identity = 35/64 (54.69%), Postives = 42/64 (65.62%), Query Frame = 0


Query: 8  MDENGGIK--MGIRQIVRLKETLQHWQGVTVCPKSKAAAHENGSQNQNQNHGILSPAINK 67
          MD+NG      GIRQIVRLKE LQ WQ VT+  ++ +   E      +QNHG +SPAINK
Sbjct: 1  MDDNGSNSKLTGIRQIVRLKEILQKWQSVTIGSRATSPPPE----GSDQNHGGISPAINK 60

Query: 68 RLTN 70
          RLTN
Sbjct: 61 RLTN 60

The following BLAST results are available for this feature:

BLAST of CsGy5G018340 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008460569.1	4.6e-28	100.00	PREDICTED: auxin-responsive protein SAUR71 isoform X1 [Cucumis melo]	[more]
XP_011655433.1	1.7e-27	100.00	PREDICTED: uncharacterized protein LOC101207913 [Cucumis sativus] >KGN51419.1 hy...	[more]
XP_008460570.1	1.7e-27	100.00	PREDICTED: auxin-responsive protein SAUR71 isoform X2 [Cucumis melo]	[more]
XP_011651409.1	1.7e-27	100.00	PREDICTED: uncharacterized protein LOC105434886 [Cucumis sativus] >KGN57847.1 hy...	[more]
XP_023539667.1	2.4e-21	87.50	uncharacterized protein LOC111800282 isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsGy5G018340 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G20810.2	4.4e-09	55.74	SAUR-like auxin-responsive protein family	[more]
AT3G43120.1	3.8e-08	50.82	SAUR-like auxin-responsive protein family	[more]

BLAST of CsGy5G018340 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy5G018340 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CCR9\|A0A1S3CCR9_CUCME	3.0e-28	100.00	auxin-responsive protein SAUR71 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1034993...	[more]
tr\|A0A1S3CD75\|A0A1S3CD75_CUCME	1.2e-27	100.00	auxin-responsive protein SAUR71 isoform X2 OS=Cucumis melo OX=3656 GN=LOC1034993...	[more]
tr\|A0A0A0KRA4\|A0A0A0KRA4_CUCSA	1.2e-27	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G534970 PE=4 SV=1	[more]
tr\|A0A0A0LB03\|A0A0A0LB03_CUCSA	1.2e-27	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G346940 PE=4 SV=1	[more]
tr\|A0A2N9GWA0\|A0A2N9GWA0_FAGSY	6.6e-07	54.69	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS34518 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009733	response to auxin
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G018340.1	CsGy5G018340.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy5G018340	Cla001873	Watermelon (97103) v1	cgybwmB406
CsGy5G018340	Csa5G534970	Cucumber (Chinese Long) v2	cgybcuB223
CsGy5G018340	MELO3C022909	Melon (DHL92) v3.5.1	cgybmeB323
CsGy5G018340	ClCG11G000020	Watermelon (Charleston Gray)	cgybwcgB331
CsGy5G018340	CSPI05G18840	Wild cucumber (PI 183967)	cgybcpiB225
CsGy5G018340	MELO3C022909.2	Melon (DHL92) v3.6.1	cgybmedB321
CsGy5G018340	CsaV3_5G027650	Cucumber (Chinese Long) v3	cgybcucB232
CsGy5G018340	Cla97C11G206370	Watermelon (97103) v2	cgybwmbB345
CsGy5G018340	BhiUN159G48	Wax gourd	cgybwgoB468

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy5G018340	Cucurbita maxima (Rimu)	cgybcmaB688
CsGy5G018340	Cucurbita moschata (Rifu)	cgybcmoB669
CsGy5G018340	Cucurbita pepo (Zucchini)	cgybcpeB664
CsGy5G018340	Bottle gourd (USVL1VR-Ls)	cgyblsiB308