CsGy5G010180 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy5G010180
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr5 : 9224118 .. 9225392 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCGATGGATACAAGTTTACCGGCGGGCCGAGCATGTATATGAAAGACGATGGAGGAAGTGGTGGAGGAGGGCAGTACATTGGAGGAGGTTTCTTGGGTGGGGTGGGGTGGGGGCGAATAACGGGTGCACGGTGTACATTTGACACTCGAATCGTGTCTGGGTATGGGTTCATCAAGCTTCTTGGAAGAGATGAAGCCATGGATGGTTGAACATTGATTGAAAGAATCAAGAAGAAGTGGAGGATGAGGAGAGAATAAAAGGGTGGGGTTGGATGCACATATTGAATTAATCAAAATTTTAAGATCAAAACTAAAGTATGGGATTTGAATACACAGGGAATGCTAAAAGGGAAATAAGGAGGAGAGATTTGAGGATGAAGAAAGGTTGTATGGAAGGTGACGGGAAAAGTAGTGGAGGTGGGTGCCTTGTTTGTATTATATCAATTAACAAATAAGTAGATCTCACTAATAATTCAATCCACTCATGTTAAAACACATTAAAAAAATTAGAAGGTCTTATCTATTCATTAGTACAAAATACAAAATACAATAGGAATTGATATGCATTTCATTTTTTTGTAGAAACACAATGATACTGATATCAATGAATAAGCGATGTATCAGTTTATTAATTATTTAGCAATTAACTTTAATTTGTCTTAGCTAGATGACACAATATATGTTTGGTTATATTTCTTTCCATTTCTTTTGAAGTTCAATAACTATATATGGAATAGTAATTAATTGACATACGCTTCTTTTTTACTCAAATAAATTGAGATCCCGTGATCCTCTGATGATGTTAACGAATTTAAAGTGGTTTGTCGTAAATATGTGATTCTGCATCAAATGTTGTTGATGACAATCACCCTATTTTGCATGCTAAGGTTTCTGACGTCCCTAGTGATTCTGTGAATATTGCTTCAGTACTTGAGAAAATTGTGTTGAAAATATTGTTGATAATGTATTTAACGTAGTTCCCTCCTCAGTACTTCATGGTAGTGATCATATAATAGGCCCGTCTGTCAATATTTCTACGGTGTCTGTTGGAGTTTATCCGAATTATTAATGTCTGCTGGAGTCGATCCTCATGATGATTGTAAGTTTGTTGGTGATAATCAAGGTAATATTGCATCCTTTGAGGAGAATGACAACAACAATGAACACAGAAAGGAAGAGGACTCTATTGAGTTTTCTAAAGATTGGGGAGTGATTGACAGTTGTGTGATGGTGAAGAAGAGAAAGTCCAAACCCCGGCTACGCATGCCTTAG

mRNA sequence

ATGTTCGATGGATACAAGTTTACCGGCGGGCCGAGCATGTATATGAAAGACGATGGAGGAAGTGGTGGAGGAGGGCAGTACATTGGAGGAGGTTTCTTGGGTGGGGTGGGGTGGGGGCGAATAACGGGTGCACGGTGTACATTTGACACTCGAATCGTGTCTGGGCCCGTCTGTCAATATTTCTACGGTGTCTGTTGGAGTTTATCCGAATTATTAATGTCTGCTGGAGTCGATCCTCATGATGATTGTAAGTTTGTTGGTGATAATCAAGGTAATATTGCATCCTTTGAGGAGAATGACAACAACAATGAACACAGAAAGGAAGAGGACTCTATTGAGTTTTCTAAAGATTGGGGAGTGATTGACAGTTGTGTGATGGTGAAGAAGAGAAAGTCCAAACCCCGGCTACGCATGCCTTAG

Coding sequence (CDS)

ATGTTCGATGGATACAAGTTTACCGGCGGGCCGAGCATGTATATGAAAGACGATGGAGGAAGTGGTGGAGGAGGGCAGTACATTGGAGGAGGTTTCTTGGGTGGGGTGGGGTGGGGGCGAATAACGGGTGCACGGTGTACATTTGACACTCGAATCGTGTCTGGGCCCGTCTGTCAATATTTCTACGGTGTCTGTTGGAGTTTATCCGAATTATTAATGTCTGCTGGAGTCGATCCTCATGATGATTGTAAGTTTGTTGGTGATAATCAAGGTAATATTGCATCCTTTGAGGAGAATGACAACAACAATGAACACAGAAAGGAAGAGGACTCTATTGAGTTTTCTAAAGATTGGGGAGTGATTGACAGTTGTGTGATGGTGAAGAAGAGAAAGTCCAAACCCCGGCTACGCATGCCTTAG

Protein sequence

MFDGYKFTGGPSMYMKDDGGSGGGGQYIGGGFLGGVGWGRITGARCTFDTRIVSGPVCQYFYGVCWSLSELLMSAGVDPHDDCKFVGDNQGNIASFEENDNNNEHRKEEDSIEFSKDWGVIDSCVMVKKRKSKPRLRMP

Homology

[Close]

BLAST of CsGy5G010180 vs. NCBI nr
Match: KGN50830.1 (hypothetical protein Csa_5G283480 [Cucumis sativus])

HSP 1 Score: 141.0 bits (354), Expect = 3.1e-30
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 73  MSAGVDPHDDCKFVGDNQGNIASFEENDNNNEHRKEEDSIEFSKDWGVIDSCVMVKKRKS 132
           MSAGVDPHDDCKFVGDNQGNIASFEENDNNNEHRKEEDSIEFSKDWGVIDSCVMVKKRKS
Sbjct: 1   MSAGVDPHDDCKFVGDNQGNIASFEENDNNNEHRKEEDSIEFSKDWGVIDSCVMVKKRKS 60

Query: 133 KPRLRMP 140
           KPRLRMP
Sbjct: 61  KPRLRMP 67

[Close]

BLAST of CsGy5G010180 vs. TrEMBL
Match: tr|A0A0A0KMD4|A0A0A0KMD4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G283480 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.1e-30
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 73  MSAGVDPHDDCKFVGDNQGNIASFEENDNNNEHRKEEDSIEFSKDWGVIDSCVMVKKRKS 132
           MSAGVDPHDDCKFVGDNQGNIASFEENDNNNEHRKEEDSIEFSKDWGVIDSCVMVKKRKS
Sbjct: 1   MSAGVDPHDDCKFVGDNQGNIASFEENDNNNEHRKEEDSIEFSKDWGVIDSCVMVKKRKS 60

Query: 133 KPRLRMP 140
           KPRLRMP
Sbjct: 61  KPRLRMP 67

The following BLAST results are available for this feature:

BLAST of CsGy5G010180 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN50830.1	3.1e-30	100.00	hypothetical protein Csa_5G283480 [Cucumis sativus]	[more]

BLAST of CsGy5G010180 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy5G010180 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy5G010180 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KMD4\|A0A0A0KMD4_CUCSA	2.1e-30	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G283480 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G010180.1	CsGy5G010180.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy5G010180	Csa5G283480	Cucumber (Chinese Long) v2	cgybcuB232
CsGy5G010180	CSPI05G12280	Wild cucumber (PI 183967)	cgybcpiB235
CsGy5G010180	CsaV3_5G013420	Cucumber (Chinese Long) v3	cgybcucB232

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy5G010180	Silver-seed gourd	carcgybB0671
CsGy5G010180	Watermelon (97103) v2	cgybwmbB376
CsGy5G010180	Wax gourd	cgybwgoB490
CsGy5G010180	Cucurbita maxima (Rimu)	cgybcmaB664
CsGy5G010180	Cucurbita maxima (Rimu)	cgybcmaB680
CsGy5G010180	Cucurbita maxima (Rimu)	cgybcmaB681
CsGy5G010180	Cucurbita moschata (Rifu)	cgybcmoB641
CsGy5G010180	Cucurbita moschata (Rifu)	cgybcmoB658
CsGy5G010180	Cucurbita moschata (Rifu)	cgybcmoB660
CsGy5G010180	Cucurbita pepo (Zucchini)	cgybcpeB656
CsGy5G010180	Cucurbita pepo (Zucchini)	cgybcpeB652
CsGy5G010180	Cucurbita pepo (Zucchini)	cgybcpeB642
CsGy5G010180	Bottle gourd (USVL1VR-Ls)	cgyblsiB332
CsGy5G010180	Melon (DHL92) v3.5.1	cgybmeB314
CsGy5G010180	Melon (DHL92) v3.6.1	cgybmedB313
CsGy5G010180	Watermelon (Charleston Gray)	cgybwcgB370
CsGy5G010180	Silver-seed gourd	carcgybB0191
CsGy5G010180	Silver-seed gourd	carcgybB0193