CSPI05G12280 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI05G12280
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr5 : 11428488 .. 11428691 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGCTGGAGTCGATCCTCATGATGATTGTAAGTTTGTTGGTGATAATCAAGGTAATATTGCATCCTTTGAGGAGAATGACGACAACAATGAACACAGAAAGGAAGAGGACTCTATTGAGTTTTCTAAAGATTGGGGAGTGATTGACAGTTGTGTGATGGTGAAGAAGAGAAAGTCCAAACCCCGGCTACGCATGCCTTAG

mRNA sequence

ATGTCTGCTGGAGTCGATCCTCATGATGATTGTAAGTTTGTTGGTGATAATCAAGGTAATATTGCATCCTTTGAGGAGAATGACGACAACAATGAACACAGAAAGGAAGAGGACTCTATTGAGTTTTCTAAAGATTGGGGAGTGATTGACAGTTGTGTGATGGTGAAGAAGAGAAAGTCCAAACCCCGGCTACGCATGCCTTAG

Coding sequence (CDS)

ATGTCTGCTGGAGTCGATCCTCATGATGATTGTAAGTTTGTTGGTGATAATCAAGGTAATATTGCATCCTTTGAGGAGAATGACGACAACAATGAACACAGAAAGGAAGAGGACTCTATTGAGTTTTCTAAAGATTGGGGAGTGATTGACAGTTGTGTGATGGTGAAGAAGAGAAAGTCCAAACCCCGGCTACGCATGCCTTAG

Homology

[Close]

BLAST of CSPI05G12280 vs. TrEMBL
Match: A0A0A0KMD4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G283480 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 2.1e-30
Identity = 66/67 (98.51%), Postives = 67/67 (100.00%), Query Frame = 1


Query: 1  MSAGVDPHDDCKFVGDNQGNIASFEENDDNNEHRKEEDSIEFSKDWGVIDSCVMVKKRKS 60
          MSAGVDPHDDCKFVGDNQGNIASFEEND+NNEHRKEEDSIEFSKDWGVIDSCVMVKKRKS
Sbjct: 1  MSAGVDPHDDCKFVGDNQGNIASFEENDNNNEHRKEEDSIEFSKDWGVIDSCVMVKKRKS 60

Query: 61 KPRLRMP 68
          KPRLRMP
Sbjct: 61 KPRLRMP 67

[Close]

BLAST of CSPI05G12280 vs. NCBI nr
Match: gi|700195653|gb|KGN50830.1| (hypothetical protein Csa_5G283480 [Cucumis sativus])

HSP 1 Score: 139.0 bits (349), Expect = 3.0e-30
Identity = 66/67 (98.51%), Postives = 67/67 (100.00%), Query Frame = 1


Query: 1  MSAGVDPHDDCKFVGDNQGNIASFEENDDNNEHRKEEDSIEFSKDWGVIDSCVMVKKRKS 60
          MSAGVDPHDDCKFVGDNQGNIASFEEND+NNEHRKEEDSIEFSKDWGVIDSCVMVKKRKS
Sbjct: 1  MSAGVDPHDDCKFVGDNQGNIASFEENDNNNEHRKEEDSIEFSKDWGVIDSCVMVKKRKS 60

Query: 61 KPRLRMP 68
          KPRLRMP
Sbjct: 61 KPRLRMP 67

The following BLAST results are available for this feature:

BLAST of CSPI05G12280 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI05G12280 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KMD4_CUCSA	2.1e-30	98.51	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G283480 PE=4 SV=1	[more]

BLAST of CSPI05G12280 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI05G12280 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700195653\|gb\|KGN50830.1\|	3.0e-30	98.51	hypothetical protein Csa_5G283480 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G12280.1	CSPI05G12280.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI05G12280	Csa5G283480	Cucumber (Chinese Long) v2	cpicuB240
CSPI05G12280	CsaV3_5G013420	Cucumber (Chinese Long) v3	cpicucB299
CSPI05G12280	CsGy5G010180	Cucumber (Gy14) v2	cgybcpiB235

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI05G12280	Cucurbita maxima (Rimu)	cmacpiB751
CSPI05G12280	Melon (DHL92) v3.5.1	cpimeB372
CSPI05G12280	Cucurbita pepo (Zucchini)	cpecpiB432
CSPI05G12280	Cucurbita pepo (Zucchini)	cpecpiB436