CsGy5G005330 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy5G005330
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	general transcription factor IIH subunit 2
Location	Chr5 : 3429948 .. 3438242 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAACATGGGTCAAGCTTTTCGCAAACTCTTCGACTCATTTTTCGGCAAGTCCGAGATGAGGGTATCATATATTCTTCTTTATTTTTGTTTTGTAGATTATTGTCTACGATTGGATTTCATACCCTTACGTGCCCATTTGATTTTGTTCATTAGAAATGCAACTTATTGATTTATTCCCCCCCTATTCCGCTGTTCAATCTGTCCCACGGTTGCATTGATATGTCTTCGTAATGTTGATTTCTTCTGATTGTAGGATTTTCTTAACTTATTGTATCCAGTTGCATTAATATGTCTTGGTGATGTTGATGTTTAATTTGAGATGGAGGTCTCAGTCAAACTCTTTGGTCAAAGTGTTACTTCGATTTTGTTTTCTGATAAGAAACTGGGGATTACATTGCAAAAGAAAACAAAAACACAGCCTAAGGGAAGGGGTAGAGGAAACCCAAGAAGAGCTTCCCAATTGTTAATAATCACAAGAAGACTGTAGTTACAAAATAATTTAGTGTAATTTGTACTCCACCAAGAGGCTGTATGCTGCACAAAAACCCAAAAAGAATCACAAGAAGTAAACTTATCTTCAAAAATTCTACTATTCCTCTTCTTCCAAAGATGCCACAAAAGCACCCCGGAAGTGCAGTTCCAAAGGATTTTTCCTTTTCCATGGAAGTTTCTACCATTTGGACTATCCATCATCTAGTCATTCACCTTCTTTGGAAGGAAACTTTTCAACCCAAAAGTATCAAGGAGATTGTTCCACCCTCTCGCAACGAAAATGACTTTGAGATCCAGTCATCAATGTTGGTCTACGAATCAGATATACTTTACAAATTGACTTTGACAAGAGGTCAGTCTCACGAGCTATTGATTGGTTGCACATACCTTATATTATAGAGAAAACGGTCCACTTGTGTCCCAATTTTAATGGTAGATGTTAATTTATGACCGAACTTGAATATGATTTGGTCTATTCTATGAGTTGTACAATTGCGTTCTTGAGTTCTAAGTGGTAGATGTTAATTTGTTGTTCTCTGCAAATCATGATTGATTTATAGGCATAAAGTTTAACATTGCCATACAACCCACCCAAGGAAGAACTGTTCTTATTTATATTAACTACAAAAGTTGGGGACCATTTGGTAGTTTGCATTTCATTGTAGTTTTTATCATTCTCCCCTTGAGCAAAAAGCCTAGGCCATTGCTCCATATAAACTTCCTTCTGAAGATCACCATGAAGAAAAGCATTTTTATGTCAAGTTGATGTAAAGGCCAATATTGAGATGCTGCCATAGAAAAGAATAACCTAACAAAAGTGAGCTTAGCAGCAAGAGAGAACGTATCAAGTAATCAACCCCATACGTCTAAACATAACCTTTAGCCACAAGGCGTGCTTTTAAACGAGCTATTGATCCATCGAGATTAACCTTAATTGCAAACACCCAATTACACCCAACAGTTTTCTTTCCTGCAGGAAGAGATACTAAATCTTGAGTACCATTATAATCTAAGGCATTCACCTCTTCAATTTTTGCATTATGCCACTAAAATGAGACAAAGCTTCATGAACGGTCTTAGGTATTGAGACAGATTGAAGAAACTTAGCAAACGAACATGAAGGAGATGATAATTGGTCATAAGATACACAAGAAGCAATAGGATAAGTGAAAGAACGTTTACCTTTTCGAAGGGCAATAAGAAGCTCATCACTTGGTCCTGGATTTGATAACAAAGAGTCTTTTGGGACATAACATTAATCTAGAGGTTGTTGCCGACGAGAGTAGACTTTAGTTATAGGCGGGCGATTAGGGGTAGGCACTAGCGGAGACAGATGTGGGGAGGGAATTGGAGACATGAGAGTATAAATAAAAAGAGGTAGTGAAAGACTTGTCCTCAAAGAAAGTAACGTCTCAAGATACAAAATATTTTTTCAAACTTTGACAGTAAAATTTGCATCCTTTTTGAACACAAGAATAACCTAAGAAAATGCACTTCAAAGACTTGGGGTCTAACTTTGTCAAAGTAGGACGAATATCTCGAACAAAACAAGTGCAACTGAATATTTTAGGCTCAATAGGAAATAATTGTTTTGTTGGAAAGAGAACATGATAACGAATCTAACCTTGAAGAACAGAAGAAGGCATTCGGTTTATGAGAAAACAAGTTGAAATTGCATCAGACCAAAAATGCTTTGGAACATGCATTCGAAAGGATAATACTCATGCAGTTTCAAGACAAAGCCTATTCTTTCATTGTGCAACCCCATTTTGGGAGGAGTATCAACACAAGATGATTGGTGAATGATTCCATGTGTACAAAGGTACAAATTATTAAGTGCTTCTGAAAAATACTCACCAGCGTTATCACTTCTCAAGCTTTTAAGGCACACACGAACTGAGTTCGAATTTCAAAGTAACTCAAAACGACTTTTCATAGAATATAATCAAGTCATGTGAGAATGATCATAAAAAAGGTAACAAAATATCTAAATCCAGTTTTGGACACAACAGAACACAAATTCCAAATACAAGAATGAACTAAACTGGAGCTAAGATGTTGAAATTTCGCAAACTAACATAAGTCACAATCCAATGAAGACAAGTTATGAAATTGAGGACAAAACTTTCTTAAGACCGAGAGAGATGGATGACCAAGACAACAATGGGCGTTAAAAGGAGAAAAAACTCTAGAATAGGCAACATTTGTTAATGTCGATACTTGGTGAGCAAAACTGTAAAGTCCTCTAGATCCATGTCCTTTCCCAATAATCTTCTTTATTCAAGATCCTAAAACAAGCAATAGACAGGAAAGAATGAGACACAACAATTAAGGTCACGTGTGATTTGACTAATAGAGATCAAGTTAAATGACGACTGAGGTAAATGTAGGAGAAATGACAAAGAAAGGGATGGGGTGAGTTTTATGTGCCAGATCTAATAACAAAAGACCTTGATCCATTTGCTAAGGTAACACTGGTAATGGATTTAGATCACAAAATTGCATAAAATAATTTGGGATTATCTGTCATATGAGCAGTAGCAGCAAAGTCTATGATCCATTTTGTAGAGGAGGAAAGGAAACAATGATTCTTGTTACCTAGCAATGGTTGTAATTGGAGCACATGCCAACGATGGAGGAGAAGCTTTTGATGGGTTTTGGTACTTATGAGATTTAGTAGAAAAACCACGAATAGATTGAACCCGCAATTGAACCAAATTAGACATCACTATGGGATCTTGTTCAACTATAGAATAGTAACAACCTCAACAAGTCACACCAAACCAAATGAGTGCCACACCAGACAAATTGAGCAAAAAATAGCCACAAAAAGAGCCAAAATAGCCACAAAATAGCGCAAAACAGCCACAACCCCTAGAAACAATCGGATTTTCTTTAAATATCGTCACACTCGAATGAATTTCAATGAAACTAAAGGCACAGACTGATCGAAAATCGAGCTCTAAGATGAACCTAACCAACGGCAGCCCAAATGGGCCTCCCACGTGCTTCCATATGCCGAAGTGTGGTGACGAAGATAGATCCCTTCTAGCAGCACATAAGCTTCACGTGCTGCGTTTCCGGTGACGAAAAATGCAAACCTCAGTGGAATACAGTGGCGCTCCTCTTGTGTTGGGCAGAATATGACGGCACGTAGGTCACTTTTGAGCTCAATTTTGATGCTATAATTTGTGTTATCGTGATTAATGGTCCTAAGACAGTTTCTTGACAAAGGACAGTTAGGTAAAACATTTAAGAGCATTTTAGCATGAATTTACAGCTTTGATTAAGGGGTTTGAAAGTTGAAATTTGTTTTGGGTCCATATTTTAGAATTTCAAAAGGGTTCGGTGAGTCAAAGGAAAGATTATCTAGATATAAATTGGGTATCAACCTCCTAGAATGCCTTTGAGACAAACAAAATCTAATTAAATTTTAAGGCATGCTAAGAAAATTTATGTTATGGTATGTCTGGTTTATGATTGACAATTTATAAGGATGTGCTATAAAGTTATAAGTTACTATGATATGATTATATAATGTGAGACCCCTCGTTGTATGTTGCATATAAAGTTAGTGGCAACTACCCTCCTACCTATAGCTATTTATACACTAGATTTGTGTACTTTCAGGTCTGCTATATTTATGTGCCTAATGGCCAATTAGTTTTGGTTTTAAAATAGCATGCATAGTAGTAATGACCCTGGGTAGGGACCTCAAAAAATTGGGTTGTTACAAGAAAGTTCTTTAGTTCATAATTGTATTAATATCTCTAATTTGCAAAGAAGGCAATATAAAACTAGGTGTAGTTTAATGTTATGTTGGCTCCTTCAAATTTTGTAGTCTATCTTTCTTGTTTTCTATCTAATTGATTATATCTTCTAGTGGGCTCATTATTGAAGAGTAGGCAATATGTTTAAAACGATATTCTGCTTTGAAAATATTATGGTAAGTGTACCCTTTGTTCTCCCTGCTCTTGAAAGATACTGCCAAGTTATACTAACGTGGTTTAAGATAAACTCTTGGATCATCACTTGGATTTAGCAGCTTCACTATTTCCCTCTATGGTTGTCATTAAGTTGAAGAAAGGGAGATGCATCATGCTTGCTAAACTTATGGAGAAAAGGTTACCCAGAAGTAATTTTTTTAACTGACACAATGATGATGACAGTTAAACACTGTCATTTTTGGTTTCACAGTATTATGGTTTTAATGGTCATTGAAGAGAATTTTTCGATATTGACATAAATTAAATTTTCAACAGTGTATCTTTTGTAATTTTGTTTCCCCCAGGAATTTGTTACTTCCTATTATTCGGTTGATCATCTCTTTTTTTGTTCCCTCTAAGTTGATTGGATTTATTTATCTTCACTGTTTCCAGAAGATGATGGCTTAGGGGTAGAACATTTCTTGGAACCTGGGCTTCACAAATGCTTGTTTGGAAGAAGTAATTGAAATCCAATGAAATCAAACCCAACTGGACTACATTGCTGATTCCTCATCCCTCCTATTGACAAATAGGACGCCATTACCTAAATATTTTTACCGACCTACTGTATTCCCCAAGTTGGGATTTTTGTGAGTAGAATTTGTTTTAGGTAGTGGGGACTCATCAATTTGATCTTGTTTCAAAACCCAACAAGTGTATATCTTCTGAAATAGTCCTTAAATATGAACAATGGGGAAAATAGGCGATTGAATGGGGAAGCCGATGAAGAAGATGATGATGATGATGCCAATGGACTTGCTGCATGGGAAAGGACTTATGCGGATGATAGGTCGTGGGAAGCCCTGCAAGAGGATGAGTCTGGACTCCTTCGTCCGATCGACAATAAAGCAATTTACCATGCCCAGTATCGAAGGCGCCTTCGAACCCTTTCTTCCTTAGCAACCACTGCTCGGATTCAGAAGGGTCTTATTCGCTATCTCTATATTGTCATTGACTTCTCCAAGGTATTCTTTTCTCTTCCATGACTATTACTACATTAGTGTTTTTTTTGTGATAACTTACTACATTAGTAAATGTTTCAACTGTTTGATTTATGAGGTTCTGTGCCTTGCCCTCTCATCTTCTTATTGAGAAATTGAATTTGTTCTAATGTTGAAGTTAAATGCATAGCGTCTCTCCTGAAATATATCATAACCATCAAATTGCATTGGTTTTTTTTTAGCTTACCTAAGAACTGTTATATGGTATAAATTCGTTGCCTCCCCAATTGTTTGTTCCCTGTTTATGTTTCAAAGGGTTTGGAGAAGCATCTCCACAGTTATTCCATAGAGGATTGCTACTCATTTAATCCAACTACTATGTAGTGAATGAAAAATGTGCTGCCTTGAGTTTTTTTTTTTTTTTGGAGCAAGTATGACTTATGTTCATAAAAACTGTAAATTACTGGAGATAAATAACTTTGAATATATGGTGATGGAATGGAAGTTTTTCTTTTTCTATTTTTTTCATTTTGCTTATTCCACCATGGGCAGGCTGCTACAGAAATGGATTTCCGACCAAGTCGAATGGCTGTGGTGGCAAAACATGTAGACGCTTTTGTAAGGGAATTCTTTGACCAAAATCCACTCAGCCAGATTGGTTTGGTGACTATAAAAGATGGTTTTGCTAATTGCTTAACAGATCTTGGTGGAAGTCCTGAATCTCATGTTAAAGCGTTAATGGGTAAACTGGAATGCTCAGGTGATGCTTCCTTGCAGAATGGTCTGGAACTTGTCCACAGCTATCTAAATCAAATTCCATCATATGGGCACCGAGAAGTTTTAGTCTTATACTCTGCTCTTAATTCTTGCGATCCTGGGGACATCATGGAGACAGTTCAGAAATGCAAAACTTCTAAAATAAGGTGTTCAGTTATTGGTCTTACTGCAGAAATTTTTATTTGCAGACATCTCTGCCAAGAAACTGGTGGCTCGTACTCTGTCGCATTGGATGAGGTTAGTTCAATAGATGTGTGAATTTTCCAAAATTGAGAGAAATTGAAATGGCTATTTTTTTAGTTGACCAGCTAATTGAACTGACCATTAATGACAGTGTAACAGAGAACACAGTTATGAAACAGAAGTTCAAAGTTTAATTGCTATAGCAAGATTTTATTGATGTTTTTATATATGGAAGTTTTCCTAAATCTTAGGGGAATACTTGTCTTGCGTTTTATGTACAGTCTCACTTTAAAGAGTTGCTATTGGAGCATGCACCCCCACCCCCAGCGATTGCAGACTCTGCCATGCCTAATTTAATCAAGATGGGTTTTCCACAAAGAGCAGCAGAGAGTTCCATTGCAATATGTTCATGCCACAAGGAAGCTAAAGTTGGAGGGGGCTATACTTGCCCTCGATGCAAAGCACGGGTTTGTGAGCTTCCCACAGAGTGTCGAATTTGTGGACTGACGCTTATCTCCTCTCCCCATTTGGCTAGGTCGTATCATCATCTTTTTCCAATTATACCATTTGATGAAGTCTCTGATAAAGTATTTCATGACCCACGACACCAACTTCCAAAAGTTTGCTTTGGCTGCCAAGAAAGCCTCATGAATCCTAGTAAGAACTCAATTAAACATGATATTTGAAGCTCTCAAATTAAACTTCTTTTTATGACATTTGTTGTCTTCTAATAATATAGTGCACATGCCATGTTGCCAAATTAGTCAGCATTTTGTATCGGGATATCTTAGAATCAGATGATTTGAAGATTAAGAACATATTTATTGTATTTACTACTAGTTGTTTGTTAGTGCCTTGCAATGTTCGACTCCTAAAGCAAAAAATGTTGTGTATAAGAGATCTTCCACATTTCTTGTTCGTGTTTTGGTCATTCTTCAATATCAATTATTGTAAGTACCAGTACTACAATCTACTGAAAAAGCATAGGGAATTAAGTTGTTATCTATGTGATTTGATTTTTCCTTCTCTGTTGAGTGACTTCTTTTTATTATATTGTTCATACGTGATTTTGTTTATGGCAATAGGAGCTACTTATACTTGTGACTTCCAAGTAAGAATAAATAAACATGGATGATTTGTTGTTACTTTATGATTTGCTGAATCTAACATTTTCACTCTCCATTCAAATGTACTTTTCATTTTAGGCACAGGTAACAGTCCAAGCATACGTGTTTCTTGCCCAAAGTGCAAACAACACTTCTGTCTTGATTGTGATATTTATATTCACGAGAGCTTGCACAATTGTCCTGGCTGTGAGAGTTTCAGGCGTCCCAAATTAGCGACTTCTGACGAATGAATGTCTACTTTTAGATGCAACATGGCCCTAACCGAATCCAAACAGGACGCTTCTCTGTCTCTGTTCATTTGCGTAAAAAGCTGCAATGAGAGCTCTGTTGAATGAATGCTGAATCCAAGGCTCACACTGCTACCATGCAGTCGTCTTTCATGTTTCATCCAGATCCAAAGCTTGTGACTTTTTGACACTTAATGTCATTGTTGAAATTGGCTAGAAGATTAATTTTTCAAGATGAAAGGCTGAAAGCCAATTTCCTTCTAGGCTGCAGGATGGACGACTTTACTTGAATGTACCCAAAATTGACCCCCAAATAGACATTTTTCCATTTTCATGAGATTTTGTAAGAACTTGATATTCATTATTATCTGATTCAGGTGTATTTTGATACACATTCTTTTAGTTAAGTTATTAAAGGAGCTTGTGCCAGAAACTTCAGTGTTTACTATTAACAATAAACACTCACGTGTAACAATGTTGTAAATATTAGCCAATATAATTATAGTGATTGTTATTAAAATATAATCATATTTGCTCATGAGGACAATAATTGTTCTTGGAA

mRNA sequence

GAACATGGGTCAAGCTTTTCGCAAACTCTTCGACTCATTTTTCGGCAAGTCCGAGATGAGGAAGATGATGGCTTAGGGGTAGAACATTTCTTGGAACCTGGGCTTCACAAATGCTTGTTTGGAAGAAGTAATTGAAATCCAATGAAATCAAACCCAACTGGACTACATTGCTGATTCCTCATCCCTCCTATTGACAAATAGGACGCCATTACCTAAATATTTTTACCGACCTACTGTATTCCCCAAGTTGGGATTTTTGTGAGTAGAATTTGTTTTAGGTAGTGGGGACTCATCAATTTGATCTTGTTTCAAAACCCAACAAGTGTATATCTTCTGAAATAGTCCTTAAATATGAACAATGGGGAAAATAGGCGATTGAATGGGGAAGCCGATGAAGAAGATGATGATGATGATGCCAATGGACTTGCTGCATGGGAAAGGACTTATGCGGATGATAGGTCGTGGGAAGCCCTGCAAGAGGATGAGTCTGGACTCCTTCGTCCGATCGACAATAAAGCAATTTACCATGCCCAGTATCGAAGGCGCCTTCGAACCCTTTCTTCCTTAGCAACCACTGCTCGGATTCAGAAGGGTCTTATTCGCTATCTCTATATTGTCATTGACTTCTCCAAGGCTGCTACAGAAATGGATTTCCGACCAAGTCGAATGGCTGTGGTGGCAAAACATGTAGACGCTTTTGTAAGGGAATTCTTTGACCAAAATCCACTCAGCCAGATTGGTTTGGTGACTATAAAAGATGGTTTTGCTAATTGCTTAACAGATCTTGGTGGAAGTCCTGAATCTCATGTTAAAGCGTTAATGGGTAAACTGGAATGCTCAGGTGATGCTTCCTTGCAGAATGGTCTGGAACTTGTCCACAGCTATCTAAATCAAATTCCATCATATGGGCACCGAGAAGTTTTAGTCTTATACTCTGCTCTTAATTCTTGCGATCCTGGGGACATCATGGAGACAGTTCAGAAATGCAAAACTTCTAAAATAAGGTGTTCAGTTATTGGTCTTACTGCAGAAATTTTTATTTGCAGACATCTCTGCCAAGAAACTGGTGGCTCGTACTCTGTCGCATTGGATGAGTCTCACTTTAAAGAGTTGCTATTGGAGCATGCACCCCCACCCCCAGCGATTGCAGACTCTGCCATGCCTAATTTAATCAAGATGGGTTTTCCACAAAGAGCAGCAGAGAGTTCCATTGCAATATGTTCATGCCACAAGGAAGCTAAAGTTGGAGGGGGCTATACTTGCCCTCGATGCAAAGCACGGGTTTGTGAGCTTCCCACAGAGTGTCGAATTTGTGGACTGACGCTTATCTCCTCTCCCCATTTGGCTAGGTCGTATCATCATCTTTTTCCAATTATACCATTTGATGAAGTCTCTGATAAAGTATTTCATGACCCACGACACCAACTTCCAAAAGTTTGCTTTGGCTGCCAAGAAAGCCTCATGAATCCTAAATCAGATGATTTGAAGATTAAGAACATATTTATTGTATTTACTACTAGTTGTTTGTTAGTGCCTTGCAATGTTCGACTCCTAAAGCAAAAAATGTTGTGTATAAGAGATCTTCCACATTTCTTGTTCGTGTTTTGGTCATTCTTCAATATCAATTATTGCACAGGTAACAGTCCAAGCATACGTGTTTCTTGCCCAAAGTGCAAACAACACTTCTGTCTTGATTGTGATATTTATATTCACGAGAGCTTGCACAATTGTCCTGGCTGTGAGAGTTTCAGGCGTCCCAAATTAGCGACTTCTGACGAATGAATGTCTACTTTTAGATGCAACATGGCCCTAACCGAATCCAAACAGGACGCTTCTCTGTCTCTGTTCATTTGCGTAAAAAGCTGCAATGAGAGCTCTGTTGAATGAATGCTGAATCCAAGGCTCACACTGCTACCATGCAGTCGTCTTTCATGTTTCATCCAGATCCAAAGCTTGTGACTTTTTGACACTTAATGTCATTGTTGAAATTGGCTAGAAGATTAATTTTTCAAGATGAAAGGCTGAAAGCCAATTTCCTTCTAGGCTGCAGGATGGACGACTTTACTTGAATGTACCCAAAATTGACCCCCAAATAGACATTTTTCCATTTTCATGAGATTTTGTAAGAACTTGATATTCATTATTATCTGATTCAGGTGTATTTTGATACACATTCTTTTAGTTAAGTTATTAAAGGAGCTTGTGCCAGAAACTTCAGTGTTTACTATTAACAATAAACACTCACGTGTAACAATGTTGTAAATATTAGCCAATATAATTATAGTGATTGTTATTAAAATATAATCATATTTGCTCATGAGGACAATAATTGTTCTTGGAA

Coding sequence (CDS)

ATGAACAATGGGGAAAATAGGCGATTGAATGGGGAAGCCGATGAAGAAGATGATGATGATGATGCCAATGGACTTGCTGCATGGGAAAGGACTTATGCGGATGATAGGTCGTGGGAAGCCCTGCAAGAGGATGAGTCTGGACTCCTTCGTCCGATCGACAATAAAGCAATTTACCATGCCCAGTATCGAAGGCGCCTTCGAACCCTTTCTTCCTTAGCAACCACTGCTCGGATTCAGAAGGGTCTTATTCGCTATCTCTATATTGTCATTGACTTCTCCAAGGCTGCTACAGAAATGGATTTCCGACCAAGTCGAATGGCTGTGGTGGCAAAACATGTAGACGCTTTTGTAAGGGAATTCTTTGACCAAAATCCACTCAGCCAGATTGGTTTGGTGACTATAAAAGATGGTTTTGCTAATTGCTTAACAGATCTTGGTGGAAGTCCTGAATCTCATGTTAAAGCGTTAATGGGTAAACTGGAATGCTCAGGTGATGCTTCCTTGCAGAATGGTCTGGAACTTGTCCACAGCTATCTAAATCAAATTCCATCATATGGGCACCGAGAAGTTTTAGTCTTATACTCTGCTCTTAATTCTTGCGATCCTGGGGACATCATGGAGACAGTTCAGAAATGCAAAACTTCTAAAATAAGGTGTTCAGTTATTGGTCTTACTGCAGAAATTTTTATTTGCAGACATCTCTGCCAAGAAACTGGTGGCTCGTACTCTGTCGCATTGGATGAGTCTCACTTTAAAGAGTTGCTATTGGAGCATGCACCCCCACCCCCAGCGATTGCAGACTCTGCCATGCCTAATTTAATCAAGATGGGTTTTCCACAAAGAGCAGCAGAGAGTTCCATTGCAATATGTTCATGCCACAAGGAAGCTAAAGTTGGAGGGGGCTATACTTGCCCTCGATGCAAAGCACGGGTTTGTGAGCTTCCCACAGAGTGTCGAATTTGTGGACTGACGCTTATCTCCTCTCCCCATTTGGCTAGGTCGTATCATCATCTTTTTCCAATTATACCATTTGATGAAGTCTCTGATAAAGTATTTCATGACCCACGACACCAACTTCCAAAAGTTTGCTTTGGCTGCCAAGAAAGCCTCATGAATCCTAAATCAGATGATTTGAAGATTAAGAACATATTTATTGTATTTACTACTAGTTGTTTGTTAGTGCCTTGCAATGTTCGACTCCTAAAGCAAAAAATGTTGTGTATAAGAGATCTTCCACATTTCTTGTTCGTGTTTTGGTCATTCTTCAATATCAATTATTGCACAGGTAACAGTCCAAGCATACGTGTTTCTTGCCCAAAGTGCAAACAACACTTCTGTCTTGATTGTGATATTTATATTCACGAGAGCTTGCACAATTGTCCTGGCTGTGAGAGTTTCAGGCGTCCCAAATTAGCGACTTCTGACGAATGA

Protein sequence

MNNGENRRLNGEADEEDDDDDANGLAAWERTYADDRSWEALQEDESGLLRPIDNKAIYHAQYRRRLRTLSSLATTARIQKGLIRYLYIVIDFSKAATEMDFRPSRMAVVAKHVDAFVREFFDQNPLSQIGLVTIKDGFANCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHSYLNQIPSYGHREVLVLYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETGGSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVGGGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQLPKVCFGCQESLMNPKSDDLKIKNIFIVFTTSCLLVPCNVRLLKQKMLCIRDLPHFLFVFWSFFNINYCTGNSPSIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKLATSDE

Homology

[Close]

BLAST of CsGy5G005330 vs. NCBI nr
Match: XP_004143721.1 (PREDICTED: general transcription factor IIH subunit 2 [Cucumis sativus] >KGN50372.1 hypothetical protein Csa_5G169080 [Cucumis sativus])

HSP 1 Score: 839.0 bits (2166), Expect = 8.2e-240
Identity = 422/476 (88.66%), Postives = 422/476 (88.66%), Query Frame = 0


Query: 1   MNNGENRRLNGEADXXXXXXXANGLAAWERTYADDRSWEALQEDESGLLRPIDNKAIYHA 60
           MNNGENRRLNGEADXXXXXXXANGLAAWERTYADDRSWEALQEDESGLLRPIDNKAIYHA
Sbjct: 1   MNNGENRRLNGEADXXXXXXXANGLAAWERTYADDRSWEALQEDESGLLRPIDNKAIYHA 60

Query: 61  QYRRRLRTLSSLATTARIQKGLIRYLYIVIDFSKAATEMDFRPSRMAVVAKHVDAFVREF 120
           QYRRRLRTLSSLATTARIQKGLIRYLYIVIDFSKAATEMDFRPSRMAVVAKHVDAFVREF
Sbjct: 61  QYRRRLRTLSSLATTARIQKGLIRYLYIVIDFSKAATEMDFRPSRMAVVAKHVDAFVREF 120

Query: 121 FDQNPLSQIGLVTIKDGFANCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHSYLN 180
           FDQNPLSQIGLVTIKDGFANCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHSYLN
Sbjct: 121 FDQNPLSQIGLVTIKDGFANCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHSYLN 180

Query: 181 QIPSYGHREVLVLYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETGG 240
           QIPSYGHREVLVLYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETGG
Sbjct: 181 QIPSYGHREVLVLYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETGG 240

Query: 241 SYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVGG 300
           SYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVGG
Sbjct: 241 SYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVGG 300

Query: 301 GYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQLP 360
           GYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQLP
Sbjct: 301 GYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQLP 360

Query: 361 KVCFGCQESLMNPKSDDLKIKNIFIVFTTSCLLVPCNVRLLKQKMLCIRDLPHFLFVFWS 420
           KVCFGCQESLMNP                                               
Sbjct: 361 KVCFGCQESLMNPS---------------------------------------------- 420

Query: 421 FFNINYCTGNSPSIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKLATSDE 477
                  TGNSPSIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKLATSDE
Sbjct: 421 -------TGNSPSIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKLATSDE 423

[Close]

BLAST of CsGy5G005330 vs. NCBI nr
Match: XP_008467294.1 (PREDICTED: general transcription factor IIH subunit 2 [Cucumis melo])

HSP 1 Score: 820.1 bits (2117), Expect = 4.0e-234
Identity = 414/476 (86.97%), Postives = 416/476 (87.39%), Query Frame = 0


Query: 1   MNNGENRRLNGEADXXXXXXXANGLAAWERTYADDRSWEALQEDESGLLRPIDNKAIYHA 60
           MNNGENRRLNGEADXXXXXXXANGLAAWERTYADDRSWEALQEDESGLL PIDNKAIYHA
Sbjct: 1   MNNGENRRLNGEADXXXXXXXANGLAAWERTYADDRSWEALQEDESGLLCPIDNKAIYHA 60

Query: 61  QYRRRLRTLSSLATTARIQKGLIRYLYIVIDFSKAATEMDFRPSRMAVVAKHVDAFVREF 120
           QYRRRLRTLSSLATTARIQKGLIRYLYIVIDFSKAATEMDFRPSRMAVVAKHV+AFVREF
Sbjct: 61  QYRRRLRTLSSLATTARIQKGLIRYLYIVIDFSKAATEMDFRPSRMAVVAKHVEAFVREF 120

Query: 121 FDQNPLSQIGLVTIKDGFANCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHSYLN 180
           FDQNPLSQIGLVTIKDG A+CLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHSYLN
Sbjct: 121 FDQNPLSQIGLVTIKDGVAHCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHSYLN 180

Query: 181 QIPSYGHREVLVLYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETGG 240
           QIPSYGHREVLVLYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETGG
Sbjct: 181 QIPSYGHREVLVLYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETGG 240

Query: 241 SYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVGG 300
           SYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVGG
Sbjct: 241 SYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVGG 300

Query: 301 GYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQLP 360
           GYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQLP
Sbjct: 301 GYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQLP 360

Query: 361 KVCFGCQESLMNPKSDDLKIKNIFIVFTTSCLLVPCNVRLLKQKMLCIRDLPHFLFVFWS 420
           KVCFGCQESLMNP                                               
Sbjct: 361 KVCFGCQESLMNPG---------------------------------------------- 420

Query: 421 FFNINYCTGNSPSIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKLATSDE 477
                  T NSP IRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFR PKLAT DE
Sbjct: 421 -------TRNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRHPKLATFDE 423

[Close]

BLAST of CsGy5G005330 vs. NCBI nr
Match: XP_022949453.1 (general transcription factor IIH subunit 2 [Cucurbita moschata] >XP_023525764.1 general transcription factor IIH subunit 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 781.9 bits (2018), Expect = 1.2e-222
Identity = 393/477 (82.39%), Postives = 407/477 (85.32%), Query Frame = 0


Query: 1   MNNGENRRLNGE-ADXXXXXXXANGLAAWERTYADDRSWEALQEDESGLLRPIDNKAIYH 60
           MNNGENRRLNGE   XXXXXXX   +AAWERTYADDRSWEALQEDESGLLRPIDNKAI+H
Sbjct: 1   MNNGENRRLNGEXXXXXXXXXXXXXMAAWERTYADDRSWEALQEDESGLLRPIDNKAIFH 60

Query: 61  AQYRRRLRTLSSLATTARIQKGLIRYLYIVIDFSKAATEMDFRPSRMAVVAKHVDAFVRE 120
           AQYRRRLR+LSSLATTARIQKGLIRYLY+VIDFS+AA EMDFRPSRMAVVAKHV+AFVRE
Sbjct: 61  AQYRRRLRSLSSLATTARIQKGLIRYLYVVIDFSRAAAEMDFRPSRMAVVAKHVEAFVRE 120

Query: 121 FFDQNPLSQIGLVTIKDGFANCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHSYL 180
           FFDQNPLSQIGLVTIKDG A+ LTDLGGSPESHVKALMGKLECSG+ASLQNGL+LV  YL
Sbjct: 121 FFDQNPLSQIGLVTIKDGVAHSLTDLGGSPESHVKALMGKLECSGEASLQNGLDLVCGYL 180

Query: 181 NQIPSYGHREVLVLYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETG 240
           NQIPSYGHREVL+LYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAE+FICRHLCQETG
Sbjct: 181 NQIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAELFICRHLCQETG 240

Query: 241 GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVG 300
           GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRA ESSIAICSCHKEAKVG
Sbjct: 241 GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAGESSIAICSCHKEAKVG 300

Query: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQL 360
           GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDK+FHDPRHQL
Sbjct: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQL 360

Query: 361 PKVCFGCQESLMNPKSDDLKIKNIFIVFTTSCLLVPCNVRLLKQKMLCIRDLPHFLFVFW 420
           PKVCFGCQE+  NP                                              
Sbjct: 361 PKVCFGCQENFTNPG--------------------------------------------- 420

Query: 421 SFFNINYCTGNSPSIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKLATSDE 477
                   TGNSP IRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPK ATSD+
Sbjct: 421 --------TGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKSATSDD 424

[Close]

BLAST of CsGy5G005330 vs. NCBI nr
Match: XP_022157930.1 (general transcription factor IIH subunit 2 [Momordica charantia])

HSP 1 Score: 780.0 bits (2013), Expect = 4.5e-222
Identity = 394/477 (82.60%), Postives = 407/477 (85.32%), Query Frame = 0


Query: 1   MNNGENRRLNGEAD-XXXXXXXANGLAAWERTYADDRSWEALQEDESGLLRPIDNKAIYH 60
           MNNGE  RLNGEAD XXXXXXX   LAAWERTYADDRSWEALQEDESGLLRPIDNKAIYH
Sbjct: 1   MNNGEGSRLNGEADXXXXXXXXXXXLAAWERTYADDRSWEALQEDESGLLRPIDNKAIYH 60

Query: 61  AQYRRRLRTLSSLATTARIQKGLIRYLYIVIDFSKAATEMDFRPSRMAVVAKHVDAFVRE 120
           AQYRRRLR+LSS+ATTARIQKGLIRYLYIVIDFS+AA EMDFRPSRMAVVAKHV+AFVRE
Sbjct: 61  AQYRRRLRSLSSIATTARIQKGLIRYLYIVIDFSRAAAEMDFRPSRMAVVAKHVEAFVRE 120

Query: 121 FFDQNPLSQIGLVTIKDGFANCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHSYL 180
           FFDQNPLSQIGLVTIKDG A+CLTDLGGSPESHVKALMGKLECSG+ASLQNGL+LV  YL
Sbjct: 121 FFDQNPLSQIGLVTIKDGVAHCLTDLGGSPESHVKALMGKLECSGEASLQNGLDLVCGYL 180

Query: 181 NQIPSYGHREVLVLYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETG 240
           NQIPSYGHREVL+LYSALNSCDPGDIMET+QKCKTSKIRCSVIGLTAEIFICRHLCQETG
Sbjct: 181 NQIPSYGHREVLILYSALNSCDPGDIMETIQKCKTSKIRCSVIGLTAEIFICRHLCQETG 240

Query: 241 GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVG 300
           GSYS+ALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVG
Sbjct: 241 GSYSIALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVG 300

Query: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQL 360
           GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKV +DPRH+L
Sbjct: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVLNDPRHRL 360

Query: 361 PKVCFGCQESLMNPKSDDLKIKNIFIVFTTSCLLVPCNVRLLKQKMLCIRDLPHFLFVFW 420
           PKVCFGCQESLMN                                               
Sbjct: 361 PKVCFGCQESLMNSG--------------------------------------------- 420

Query: 421 SFFNINYCTGNSPSIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKLATSDE 477
                   TGNS  IRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPK A S+E
Sbjct: 421 --------TGNSQGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKSAASNE 424

[Close]

BLAST of CsGy5G005330 vs. NCBI nr
Match: XP_022998882.1 (general transcription factor IIH subunit 2 [Cucurbita maxima])

HSP 1 Score: 779.6 bits (2012), Expect = 5.9e-222
Identity = 392/477 (82.18%), Postives = 406/477 (85.12%), Query Frame = 0


Query: 1   MNNGENRRLNGE-ADXXXXXXXANGLAAWERTYADDRSWEALQEDESGLLRPIDNKAIYH 60
           MNNGENRRLNGE   XXXXXXX   +AAWERTYADDRSWEALQEDESGLLRPIDNKAI+H
Sbjct: 1   MNNGENRRLNGEXXXXXXXXXXXXXMAAWERTYADDRSWEALQEDESGLLRPIDNKAIFH 60

Query: 61  AQYRRRLRTLSSLATTARIQKGLIRYLYIVIDFSKAATEMDFRPSRMAVVAKHVDAFVRE 120
           AQYRRRLR+LSSLATTARIQKGLIRYLY+VIDFS+AA EMDFRPSRMAVVAKHV+AFVRE
Sbjct: 61  AQYRRRLRSLSSLATTARIQKGLIRYLYVVIDFSRAAAEMDFRPSRMAVVAKHVEAFVRE 120

Query: 121 FFDQNPLSQIGLVTIKDGFANCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHSYL 180
           FFDQNPLSQIGLVTIKDG A+ LTDLGGSPESHVKALMGKLECSG+ASLQNGL+LV  YL
Sbjct: 121 FFDQNPLSQIGLVTIKDGVAHSLTDLGGSPESHVKALMGKLECSGEASLQNGLDLVCGYL 180

Query: 181 NQIPSYGHREVLVLYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETG 240
           NQIPSYGHREVL+LYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAE+FICRHLCQETG
Sbjct: 181 NQIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAELFICRHLCQETG 240

Query: 241 GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVG 300
           GSY VALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRA ESSIAICSCHKEAKVG
Sbjct: 241 GSYLVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAGESSIAICSCHKEAKVG 300

Query: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQL 360
           GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDK+FHDPRHQL
Sbjct: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQL 360

Query: 361 PKVCFGCQESLMNPKSDDLKIKNIFIVFTTSCLLVPCNVRLLKQKMLCIRDLPHFLFVFW 420
           PKVCFGCQE+  NP                                              
Sbjct: 361 PKVCFGCQENFTNPG--------------------------------------------- 420

Query: 421 SFFNINYCTGNSPSIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKLATSDE 477
                   TGNSP IRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPK ATSD+
Sbjct: 421 --------TGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKSATSDD 424

[Close]

BLAST of CsGy5G005330 vs. TAIR10
Match: AT1G05055.1 (general transcription factor II H2)

HSP 1 Score: 633.6 bits (1633), Expect = 9.5e-182
Identity = 307/450 (68.22%), Postives = 344/450 (76.44%), Query Frame = 0


Query: 22  ANGLAAWERTYADDRSWEALQEDESGLLRPIDNKAIYHAQYRRRLRTLSSLATTARIQKG 81
           A G+  WER Y DDRSWE LQEDESGLLRPIDN AIYHAQYRRRLR LS+ A   RIQKG
Sbjct: 20  AEGIGEWERAYVDDRSWEELQEDESGLLRPIDNSAIYHAQYRRRLRMLSAAAAGTRIQKG 79

Query: 82  LIRYLYIVIDFSKAATEMDFRPSRMAVVAKHVDAFVREFFDQNPLSQIGLVTIKDGFANC 141
           LIRYLYIVIDFS+AA EMDFRPSRMA++AKHV+AF+REFFDQNPLSQIGLV+IK+G A+ 
Sbjct: 80  LIRYLYIVIDFSRAAAEMDFRPSRMAIMAKHVEAFIREFFDQNPLSQIGLVSIKNGVAHT 139

Query: 142 LTDLGGSPESHVKALMGKLECSGDASLQNGLELVHSYLNQIPSYGHREVLVLYSALNSCD 201
           LTDLGGSPE+H+KALMGKLE  GD+SLQN LELVH +LNQ+PSYGHREVL+LYSAL +CD
Sbjct: 140 LTDLGGSPETHIKALMGKLEALGDSSLQNALELVHEHLNQVPSYGHREVLILYSALCTCD 199

Query: 202 PGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETGGSYSVALDESHFKELLLEHAPP 261
           PGDIMET+QKCK SK+RCSVIGL+AE+FIC+HLCQETGG YSVA+DE H K+LLLEHAPP
Sbjct: 200 PGDIMETIQKCKKSKLRCSVIGLSAEMFICKHLCQETGGLYSVAVDEVHLKDLLLEHAPP 259

Query: 262 PPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVGGGYTCPRCKARVCELPTECRIC 321
           PPAIA+ A+ NLIKMGFPQRAAE S+AICSCHKE K+G GY CPRCKARVC+LPTEC IC
Sbjct: 260 PPAIAEFAIANLIKMGFPQRAAEGSMAICSCHKEVKIGAGYMCPRCKARVCDLPTECTIC 319

Query: 322 GLTLISSPHLARSYHHLFPIIPFDEV-SDKVFHDPRHQLPKVCFGCQESLMNPKSDDLKI 381
           GLTL+SSPHLARSYHHLFPI PFDEV +    +D R +L K CFGCQ+SL+         
Sbjct: 320 GLTLVSSPHLARSYHHLFPIAPFDEVPALSSLNDNRRKLGKSCFGCQQSLIG-------- 379

Query: 382 KNIFIVFTTSCLLVPCNVRLLKQKMLCIRDLPHFLFVFWSFFNINYCTGNSPSIRVSCPK 441
                                                           GN P   V+C K
Sbjct: 380 -----------------------------------------------AGNKPVPCVTCRK 414

Query: 442 CKQHFCLDCDIYIHESLHNCPGCESFRRPK 471
           CK +FCLDCDIYIHESLHNCPGCES  RPK
Sbjct: 440 CKHYFCLDCDIYIHESLHNCPGCESIHRPK 414

[Close]

BLAST of CsGy5G005330 vs. Swiss-Prot
Match: sp|Q9ZVN9|TF2H2_ARATH (General transcription factor IIH subunit 2 OS=Arabidopsis thaliana OX=3702 GN=GTF2H2 PE=1 SV=1)

HSP 1 Score: 633.6 bits (1633), Expect = 1.7e-180
Identity = 307/450 (68.22%), Postives = 344/450 (76.44%), Query Frame = 0


Query: 22  ANGLAAWERTYADDRSWEALQEDESGLLRPIDNKAIYHAQYRRRLRTLSSLATTARIQKG 81
           A G+  WER Y DDRSWE LQEDESGLLRPIDN AIYHAQYRRRLR LS+ A   RIQKG
Sbjct: 20  AEGIGEWERAYVDDRSWEELQEDESGLLRPIDNSAIYHAQYRRRLRMLSAAAAGTRIQKG 79

Query: 82  LIRYLYIVIDFSKAATEMDFRPSRMAVVAKHVDAFVREFFDQNPLSQIGLVTIKDGFANC 141
           LIRYLYIVIDFS+AA EMDFRPSRMA++AKHV+AF+REFFDQNPLSQIGLV+IK+G A+ 
Sbjct: 80  LIRYLYIVIDFSRAAAEMDFRPSRMAIMAKHVEAFIREFFDQNPLSQIGLVSIKNGVAHT 139

Query: 142 LTDLGGSPESHVKALMGKLECSGDASLQNGLELVHSYLNQIPSYGHREVLVLYSALNSCD 201
           LTDLGGSPE+H+KALMGKLE  GD+SLQN LELVH +LNQ+PSYGHREVL+LYSAL +CD
Sbjct: 140 LTDLGGSPETHIKALMGKLEALGDSSLQNALELVHEHLNQVPSYGHREVLILYSALCTCD 199

Query: 202 PGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETGGSYSVALDESHFKELLLEHAPP 261
           PGDIMET+QKCK SK+RCSVIGL+AE+FIC+HLCQETGG YSVA+DE H K+LLLEHAPP
Sbjct: 200 PGDIMETIQKCKKSKLRCSVIGLSAEMFICKHLCQETGGLYSVAVDEVHLKDLLLEHAPP 259

Query: 262 PPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVGGGYTCPRCKARVCELPTECRIC 321
           PPAIA+ A+ NLIKMGFPQRAAE S+AICSCHKE K+G GY CPRCKARVC+LPTEC IC
Sbjct: 260 PPAIAEFAIANLIKMGFPQRAAEGSMAICSCHKEVKIGAGYMCPRCKARVCDLPTECTIC 319

Query: 322 GLTLISSPHLARSYHHLFPIIPFDEV-SDKVFHDPRHQLPKVCFGCQESLMNPKSDDLKI 381
           GLTL+SSPHLARSYHHLFPI PFDEV +    +D R +L K CFGCQ+SL+         
Sbjct: 320 GLTLVSSPHLARSYHHLFPIAPFDEVPALSSLNDNRRKLGKSCFGCQQSLIG-------- 379

Query: 382 KNIFIVFTTSCLLVPCNVRLLKQKMLCIRDLPHFLFVFWSFFNINYCTGNSPSIRVSCPK 441
                                                           GN P   V+C K
Sbjct: 380 -----------------------------------------------AGNKPVPCVTCRK 414

Query: 442 CKQHFCLDCDIYIHESLHNCPGCESFRRPK 471
           CK +FCLDCDIYIHESLHNCPGCES  RPK
Sbjct: 440 CKHYFCLDCDIYIHESLHNCPGCESIHRPK 414

[Close]

BLAST of CsGy5G005330 vs. Swiss-Prot
Match: sp|Q2TBV5|TF2H2_BOVIN (General transcription factor IIH subunit 2 OS=Bos taurus OX=9913 GN=GTF2H2 PE=2 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 3.9e-84
Identity = 163/449 (36.30%), Postives = 248/449 (55.23%), Query Frame = 0


Query: 28  WERTYADDRSWEALQEDESGLLRPIDNKAIYHAQYRRRLRTLSSLATTARIQKGLIRYLY 87
           WE  Y  +R+WE L+EDESG L+      ++ A+ +R            +++ G++R+LY
Sbjct: 11  WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKR------VFEHHGQVRLGMMRHLY 70

Query: 88  IVIDFSKAATEMDFRPSRMAVVAKHVDAFVREFFDQNPLSQIGLVTIKDGFANCLTDLGG 147
           +V+D S+   + D +P+R+    K ++ FV E+FDQNP+SQIG++  K   A  LT+L G
Sbjct: 71  VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 130

Query: 148 SPESHVKALMGKLE--CSGDASLQNGLELVHSYLNQIPSYGHREVLVLYSALNSCDPGDI 207
           +P  H+ +L   ++  C G+ SL N L +    L  +P +  REVL+++S+L +CDP +I
Sbjct: 131 NPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 190

Query: 208 METVQKCKTSKIRCSVIGLTAEIFICRHLCQETGGSYSVALDESHFKELLLEHAPPPPAI 267
            + ++  K +KIR S+IGL+AE+ +C  L +ETGG+Y V LDESH+KELL  H  PPPA 
Sbjct: 191 YDLIKSLKAAKIRVSIIGLSAEVRVCTALARETGGTYHVILDESHYKELLTHHVSPPPAS 250

Query: 268 ADSAMPNLIKMGFPQRA--------AESSIAICSCHKEAKVG---GGYTCPRCKARVCEL 327
           ++S   +LI+MGFPQ          A+ S ++       + G   GGY CP+C+A+ CEL
Sbjct: 251 SNSEC-SLIRMGFPQHTIASLSDQDAKPSFSMAHLDSNTEPGLTLGGYFCPQCRAKYCEL 310

Query: 328 PTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQLPKVCFGCQESLMNPK 387
           P EC+ICGLTL+S+PHLARSYHHLFP+  F E+  +      H   + C+ CQ       
Sbjct: 311 PVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLE-----EHNGERFCYACQ------- 370

Query: 388 SDDLKIKNIFIVFTTSCLLVPCNVRLLKQKMLCIRDLPHFLFVFWSFFNINYCTGNSPSI 447
             +LK +++++                                                 
Sbjct: 371 -GELKDQHVYV------------------------------------------------- 385

Query: 448 RVSCPKCKQHFCLDCDIYIHESLHNCPGC 464
              C  C+  FC+DCD+++H+SLH CPGC
Sbjct: 431 ---CSVCQNVFCVDCDVFVHDSLHCCPGC 385

[Close]

BLAST of CsGy5G005330 vs. Swiss-Prot
Match: sp|A0JN27|TF2H2_RAT (General transcription factor IIH subunit 2 OS=Rattus norvegicus OX=10116 GN=Gtf2h2 PE=1 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 2.5e-83
Identity = 164/450 (36.44%), Postives = 248/450 (55.11%), Query Frame = 0


Query: 28  WERTYADDRSWEALQEDESGLLRPIDNKAIYHAQYRRRLRTLSSLATTARIQKGLIRYLY 87
           WE  Y  +R+WE L+EDESG L+      ++ A+ +R            +++ G++R+LY
Sbjct: 11  WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKR------VFEHHGQVRLGMMRHLY 70

Query: 88  IVIDFSKAATEMDFRPSRMAVVAKHVDAFVREFFDQNPLSQIGLVTIKDGFANCLTDLGG 147
           +V+D S+   + D +P+R+    K ++ FV E+FDQNP+SQIG++  K   A  LT+L G
Sbjct: 71  VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 130

Query: 148 SPESHVKALMGKLE--CSGDASLQNGLELVHSYLNQIPSYGHREVLVLYSALNSCDPGDI 207
           +P  H+ +L   ++  C G+ SL N L +    L  +P +  REVL+++S+L +CDP +I
Sbjct: 131 NPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 190

Query: 208 METVQKCKTSKIRCSVIGLTAEIFICRHLCQETGGSYSVALDESHFKELLLEHAPPPPAI 267
            + ++  KT+KIR SVIGL+AE+ +C  L +ETGG+Y V LDE+H+KELL  H  PPPA 
Sbjct: 191 YDLIKTLKTAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDETHYKELLARHVSPPPAS 250

Query: 268 ADSAMPNLIKMGFPQRA--------AESSIAICSCHKEAK----VGGGYTCPRCKARVCE 327
           + S   +LI+MGFPQ          A+ S ++      +       GGY CP+C+A+ CE
Sbjct: 251 SGSEC-SLIRMGFPQHTIASLSDQDAKPSFSMAHLDNNSTEPGLTLGGYFCPQCRAKYCE 310

Query: 328 LPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQLPKVCFGCQESLMNP 387
           LP EC+ICGLTL+S+PHLARSYHHLFP+  F E+  + +   R      C+GCQ      
Sbjct: 311 LPVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEEYKGER-----FCYGCQ------ 370

Query: 388 KSDDLKIKNIFIVFTTSCLLVPCNVRLLKQKMLCIRDLPHFLFVFWSFFNINYCTGNSPS 447
              +LK +++++                                                
Sbjct: 371 --GELKDQHVYV------------------------------------------------ 386

Query: 448 IRVSCPKCKQHFCLDCDIYIHESLHNCPGC 464
               C  C+  FC+DCD+++H+SLH CPGC
Sbjct: 431 ----CTVCRNVFCVDCDVFVHDSLHCCPGC 386

[Close]

BLAST of CsGy5G005330 vs. Swiss-Prot
Match: sp|O74995|TFH47_SCHPO (General transcription and DNA repair factor IIH subunit ssl1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=ssl1 PE=1 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 2.2e-82
Identity = 163/442 (36.88%), Postives = 232/442 (52.49%), Query Frame = 0


Query: 28  WERTYADDRSWEALQEDESGLLRPIDNKAIYHAQYRRRLRTLSSLATTARIQKGLIRYLY 87
           WE  Y   RSW+ +QED  G L  +    I   + +R LR       T  +Q+G+IR++ 
Sbjct: 39  WEGEY--QRSWDIVQEDAEGSLVGVIAGLIQSGKRKRLLR------DTTPLQRGIIRHMV 98

Query: 88  IVIDFSKAATEMDFRPSRMAVVAKHVDAFVREFFDQNPLSQIGLVTIKDGFANCLTDLGG 147
           +V+D S +  E DF   R  +  K+   FV EFF+QNP+SQ+ ++ + DG A+ +TDL G
Sbjct: 99  LVLDLSNSMEERDFHHKRFDLQIKYASEFVLEFFEQNPISQLSIIGVMDGIAHRITDLHG 158

Query: 148 SPESHVKALMGKLECSGDASLQNGLELVHSYLNQIPSYGHREVLVLYSALNSCDPGDIME 207
           +P+SH++ L    +CSG+ SLQN LE+  + L+ I S+G REVL+++ ++ S DPGDI +
Sbjct: 159 NPQSHIQKLKSLRDCSGNFSLQNALEMARASLSHIASHGTREVLIIFGSILSSDPGDIFK 218

Query: 208 TVQKCKTSKIRCSVIGLTAEIFICRHLCQETGGS----YSVALDESHFKELLLEHA-PPP 267
           T+       IR  ++GL AE+ IC+ +C +T  S    Y V + E HF+ELLLE   PP 
Sbjct: 219 TIDALVHDSIRVRIVGLAAEVAICKEICNKTNSSTKNAYGVVISEQHFRELLLESTIPPA 278

Query: 268 PAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVGGGYTCPRCKARVCELPTECRICG 327
              A +   +L+ MGFP +  E   ++C+CH      GG+ CPRCKA+VC LP EC  C 
Sbjct: 279 TDSAKTTDASLVMMGFPSKVVEQLPSLCACH-SIPSRGGFHCPRCKAKVCTLPIECPSCS 338

Query: 328 LTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQLPKVCFGCQESLMNPKSDDLKIKN 387
           L LI S HLARSYHHLFP+  + E+         H     CF CQ     P         
Sbjct: 339 LVLILSTHLARSYHHLFPLKNWSEIPWSANPKSTH-----CFACQLPFPKPP-------- 398

Query: 388 IFIVFTTSCLLVPCNVRLLKQKMLCIRDLPHFLFVFWSFFNINYCTGNSPSIRVSCPKCK 447
                                                    ++    ++ S+R +CP CK
Sbjct: 399 -----------------------------------------VSPFDESTSSMRYACPSCK 417

Query: 448 QHFCLDCDIYIHESLHNCPGCE 465
            HFCLDCD++ HE LH C GC+
Sbjct: 459 NHFCLDCDVFAHEQLHECYGCQ 417

[Close]

BLAST of CsGy5G005330 vs. Swiss-Prot
Match: sp|Q9JIB4|TF2H2_MOUSE (General transcription factor IIH subunit 2 OS=Mus musculus OX=10090 GN=Gtf2h2 PE=1 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 5.3e-81
Identity = 161/450 (35.78%), Postives = 245/450 (54.44%), Query Frame = 0


Query: 28  WERTYADDRSWEALQEDESGLLRPIDNKAIYHAQYRRRLRTLSSLATTARIQKGLIRYLY 87
           WE  Y  +R+WE L+EDE+G L+      ++ A+ +R            +++ G++R+LY
Sbjct: 11  WEGGY--ERTWEILKEDETGSLKATIEDILFKAKRKR------VFEHHGQVRLGMMRHLY 70

Query: 88  IVIDFSKAATEMDFRPSRMAVVAKHVDAFVREFFDQNPLSQIGLVTIKDGFANCLTDLGG 147
           +V+D S+   + D +P+R+    K ++ FV E+FDQNP+SQIG++  K   A  LT+L G
Sbjct: 71  VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 130

Query: 148 SPESHVKALMGKLE--CSGDASLQNGLELVHSYLNQIPSYGHREVLVLYSALNSCDPGDI 207
           +P  H+ +L   ++  C G+ SL N L +    L  +P +  REVL+++S+L +CDP +I
Sbjct: 131 NPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 190

Query: 208 METVQKCKTSKIRCSVIGLTAEIFICRHLCQETGGSYSVALDESHFKELLLEHAPPPPAI 267
            + ++  KT+KIR SVIGL+AE+ +C  L +ETGG+Y V LDE+H+KELL  H  P    
Sbjct: 191 YDLIKTLKTAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDETHYKELLAHHVSPXXXX 250

Query: 268 ADSAMPNLIKMGFPQRA--------AESSIAICSCHKEAK----VGGGYTCPRCKARVCE 327
             S   +LI+MGFPQ          A+ S ++      +       GGY CP+C+A+ CE
Sbjct: 251 XSSEC-SLIRMGFPQHTIASLSDQDAKPSFSMAHLDNNSTEPGLTLGGYFCPQCRAKYCE 310

Query: 328 LPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQLPKVCFGCQESLMNP 387
           LP EC+ICGLTL+S+PHLARSYHHLFP+  F E+S + +   R      C+GCQ      
Sbjct: 311 LPVECKICGLTLVSAPHLARSYHHLFPLDAFQEISLEEYKGER-----FCYGCQ------ 370

Query: 388 KSDDLKIKNIFIVFTTSCLLVPCNVRLLKQKMLCIRDLPHFLFVFWSFFNINYCTGNSPS 447
              +LK +++++                                                
Sbjct: 371 --GELKDQHVYV------------------------------------------------ 386

Query: 448 IRVSCPKCKQHFCLDCDIYIHESLHNCPGC 464
               C  C+  FC+DCD+++H+SLH CPGC
Sbjct: 431 ----CTVCQNVFCVDCDVFVHDSLHCCPGC 386

[Close]

BLAST of CsGy5G005330 vs. TrEMBL
Match: tr|A0A0A0KPM4|A0A0A0KPM4_CUCSA (General transcription factor IIH subunit OS=Cucumis sativus OX=3659 GN=Csa_5G169080 PE=3 SV=1)

HSP 1 Score: 839.0 bits (2166), Expect = 5.4e-240
Identity = 422/476 (88.66%), Postives = 422/476 (88.66%), Query Frame = 0


Query: 1   MNNGENRRLNGEADXXXXXXXANGLAAWERTYADDRSWEALQEDESGLLRPIDNKAIYHA 60
           MNNGENRRLNGEADXXXXXXXANGLAAWERTYADDRSWEALQEDESGLLRPIDNKAIYHA
Sbjct: 1   MNNGENRRLNGEADXXXXXXXANGLAAWERTYADDRSWEALQEDESGLLRPIDNKAIYHA 60

Query: 61  QYRRRLRTLSSLATTARIQKGLIRYLYIVIDFSKAATEMDFRPSRMAVVAKHVDAFVREF 120
           QYRRRLRTLSSLATTARIQKGLIRYLYIVIDFSKAATEMDFRPSRMAVVAKHVDAFVREF
Sbjct: 61  QYRRRLRTLSSLATTARIQKGLIRYLYIVIDFSKAATEMDFRPSRMAVVAKHVDAFVREF 120

Query: 121 FDQNPLSQIGLVTIKDGFANCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHSYLN 180
           FDQNPLSQIGLVTIKDGFANCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHSYLN
Sbjct: 121 FDQNPLSQIGLVTIKDGFANCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHSYLN 180

Query: 181 QIPSYGHREVLVLYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETGG 240
           QIPSYGHREVLVLYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETGG
Sbjct: 181 QIPSYGHREVLVLYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETGG 240

Query: 241 SYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVGG 300
           SYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVGG
Sbjct: 241 SYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVGG 300

Query: 301 GYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQLP 360
           GYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQLP
Sbjct: 301 GYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQLP 360

Query: 361 KVCFGCQESLMNPKSDDLKIKNIFIVFTTSCLLVPCNVRLLKQKMLCIRDLPHFLFVFWS 420
           KVCFGCQESLMNP                                               
Sbjct: 361 KVCFGCQESLMNPS---------------------------------------------- 420

Query: 421 FFNINYCTGNSPSIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKLATSDE 477
                  TGNSPSIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKLATSDE
Sbjct: 421 -------TGNSPSIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKLATSDE 423

[Close]

BLAST of CsGy5G005330 vs. TrEMBL
Match: tr|A0A1S3CUH8|A0A1S3CUH8_CUCME (General transcription factor IIH subunit OS=Cucumis melo OX=3656 GN=LOC103504674 PE=3 SV=1)

HSP 1 Score: 820.1 bits (2117), Expect = 2.6e-234
Identity = 414/476 (86.97%), Postives = 416/476 (87.39%), Query Frame = 0


Query: 1   MNNGENRRLNGEADXXXXXXXANGLAAWERTYADDRSWEALQEDESGLLRPIDNKAIYHA 60
           MNNGENRRLNGEADXXXXXXXANGLAAWERTYADDRSWEALQEDESGLL PIDNKAIYHA
Sbjct: 1   MNNGENRRLNGEADXXXXXXXANGLAAWERTYADDRSWEALQEDESGLLCPIDNKAIYHA 60

Query: 61  QYRRRLRTLSSLATTARIQKGLIRYLYIVIDFSKAATEMDFRPSRMAVVAKHVDAFVREF 120
           QYRRRLRTLSSLATTARIQKGLIRYLYIVIDFSKAATEMDFRPSRMAVVAKHV+AFVREF
Sbjct: 61  QYRRRLRTLSSLATTARIQKGLIRYLYIVIDFSKAATEMDFRPSRMAVVAKHVEAFVREF 120

Query: 121 FDQNPLSQIGLVTIKDGFANCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHSYLN 180
           FDQNPLSQIGLVTIKDG A+CLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHSYLN
Sbjct: 121 FDQNPLSQIGLVTIKDGVAHCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHSYLN 180

Query: 181 QIPSYGHREVLVLYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETGG 240
           QIPSYGHREVLVLYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETGG
Sbjct: 181 QIPSYGHREVLVLYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETGG 240

Query: 241 SYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVGG 300
           SYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVGG
Sbjct: 241 SYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVGG 300

Query: 301 GYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQLP 360
           GYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQLP
Sbjct: 301 GYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQLP 360

Query: 361 KVCFGCQESLMNPKSDDLKIKNIFIVFTTSCLLVPCNVRLLKQKMLCIRDLPHFLFVFWS 420
           KVCFGCQESLMNP                                               
Sbjct: 361 KVCFGCQESLMNPG---------------------------------------------- 420

Query: 421 FFNINYCTGNSPSIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKLATSDE 477
                  T NSP IRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFR PKLAT DE
Sbjct: 421 -------TRNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRHPKLATFDE 423

[Close]

BLAST of CsGy5G005330 vs. TrEMBL
Match: tr|A0A2P4M9Z7|A0A2P4M9Z7_QUESU (General transcription factor IIH subunit OS=Quercus suber OX=58331 GN=CFP56_75783 PE=3 SV=1)

HSP 1 Score: 718.4 bits (1853), Expect = 1.1e-203
Identity = 345/477 (72.33%), Postives = 385/477 (80.71%), Query Frame = 0


Query: 1   MNNGENRRLNGEADXXXXXXXANG-LAAWERTYADDRSWEALQEDESGLLRPIDNKAIYH 60
           MNNG  RRLNGE +       + G L AWERTYAD+RSWE+LQEDESGLLRP+DNK +YH
Sbjct: 1   MNNGNGRRLNGETEEDDDDEGSEGDLDAWERTYADERSWESLQEDESGLLRPVDNKTLYH 60

Query: 61  AQYRRRLRTLSSLATTARIQKGLIRYLYIVIDFSKAATEMDFRPSRMAVVAKHVDAFVRE 120
           AQYRRR+R+LSS ATT+RIQKGLIRYLYIV+D S+AA EMD+RPSRMAVVAKHV+AF+RE
Sbjct: 61  AQYRRRIRSLSSQATTSRIQKGLIRYLYIVVDLSRAAAEMDYRPSRMAVVAKHVEAFIRE 120

Query: 121 FFDQNPLSQIGLVTIKDGFANCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHSYL 180
           FFDQNPLSQ+GLVTIKDG A+CLTDLGGSPESHVKALMGKLECSG++SLQN L+LV  YL
Sbjct: 121 FFDQNPLSQLGLVTIKDGIAHCLTDLGGSPESHVKALMGKLECSGESSLQNALDLVQGYL 180

Query: 181 NQIPSYGHREVLVLYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETG 240
           NQIPSYGHREVL+LYSAL++CDPGDI+ET+QKCK SK+RCSVIGL+AEIFIC+HLCQETG
Sbjct: 181 NQIPSYGHREVLILYSALSTCDPGDILETIQKCKKSKMRCSVIGLSAEIFICKHLCQETG 240

Query: 241 GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVG 300
           GSYSVA+DESHFKEL+LEHAPPPPAIA+ A+ NLIKMGFPQRAAESSIAICSCHKEAKVG
Sbjct: 241 GSYSVAMDESHFKELILEHAPPPPAIAEFAIANLIKMGFPQRAAESSIAICSCHKEAKVG 300

Query: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQL 360
           GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPI+PFDEVS  V +DP ++L
Sbjct: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIVPFDEVSSSVLNDPHNRL 360

Query: 361 PKVCFGCQESLMNPKSDDLKIKNIFIVFTTSCLLVPCNVRLLKQKMLCIRDLPHFLFVFW 420
           P+ CFGCQ+SL NP                                              
Sbjct: 361 PRSCFGCQQSLPNP---------------------------------------------- 420

Query: 421 SFFNINYCTGNSPSIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKLATSDE 477
                    GN PS+RV+CPKCKQHFCLDCDIYIHESLHNCPGCESFR  K   + E
Sbjct: 421 ---------GNKPSLRVACPKCKQHFCLDCDIYIHESLHNCPGCESFRHLKSPIATE 422

[Close]

BLAST of CsGy5G005330 vs. TrEMBL
Match: tr|A0A2P5E4E9|A0A2P5E4E9_9ROSA (General transcription factor IIH subunit OS=Trema orientalis OX=63057 GN=TorRG33x02_234280 PE=3 SV=1)

HSP 1 Score: 690.6 bits (1781), Expect = 2.4e-195
Identity = 346/478 (72.38%), Postives = 376/478 (78.66%), Query Frame = 0


Query: 1   MNNGENRRLNGE--ADXXXXXXXANGLAAWERTYADDRSWEALQEDESGLLRPIDNKAIY 60
           MNNGE RRLNGE    XXXXXXX   L AWERTYAD+RSWE+LQEDESGLLRPIDNKA+Y
Sbjct: 1   MNNGEERRLNGEXXXXXXXXXXXXXXLEAWERTYADERSWESLQEDESGLLRPIDNKALY 60

Query: 61  HAQYRRRLRTLSSLATTARIQKGLIRYLYIVIDFSKAATEMDFRPSRMAVVAKHVDAFVR 120
           H+QYRRRLRT    A+  RIQKGLIRYL++VID SKAA EMDFRPSR AVVAKHV+ F+R
Sbjct: 61  HSQYRRRLRT----ASATRIQKGLIRYLFVVIDLSKAAAEMDFRPSRRAVVAKHVEVFIR 120

Query: 121 EFFDQNPLSQIGLVTIKDGFANCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHSY 180
           EFFDQNPLSQIGLVTIKDG ANCLTDLGGSPESHVKALMGKLECSG++S+QN L+LVH Y
Sbjct: 121 EFFDQNPLSQIGLVTIKDGVANCLTDLGGSPESHVKALMGKLECSGESSIQNALDLVHGY 180

Query: 181 LNQIPSYGHREVLVLYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQET 240
           LNQIPSYGHREVL+LYSAL++CDPGDIMET+Q CK SKIRCSVIGL+AEIFIC+HLCQET
Sbjct: 181 LNQIPSYGHREVLILYSALSTCDPGDIMETIQTCKKSKIRCSVIGLSAEIFICKHLCQET 240

Query: 241 GGSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKV 300
           GGSYSVALDESHFKEL+LEHAPPPPAIA+ A+ NLIKMGFPQRAAESSIAICSCHKEAK 
Sbjct: 241 GGSYSVALDESHFKELILEHAPPPPAIAEFAIANLIKMGFPQRAAESSIAICSCHKEAKA 300

Query: 301 GGGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQ 360
           GGGYTCPRCKARVCELPTECR CGLTLISSPHLARSYHHLFPI+PFDEVS  + +DP  +
Sbjct: 301 GGGYTCPRCKARVCELPTECRTCGLTLISSPHLARSYHHLFPIVPFDEVSLSLLNDPYRK 360

Query: 361 LPKVCFGCQESLMNPKSDDLKIKNIFIVFTTSCLLVPCNVRLLKQKMLCIRDLPHFLFVF 420
           LP+ CFGCQ +L+                                               
Sbjct: 361 LPRACFGCQHTLLG---------------------------------------------- 419

Query: 421 WSFFNINYCTGNSPSIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKLATSDE 477
                     GN P  RVSCPKCKQHFCLDCDIYIHESLHNCPGCES R  K   + E
Sbjct: 421 ---------AGNKPGPRVSCPKCKQHFCLDCDIYIHESLHNCPGCESARHSKPVAATE 419

[Close]

BLAST of CsGy5G005330 vs. TrEMBL
Match: tr|F6GTZ1|F6GTZ1_VITVI (General transcription factor IIH subunit OS=Vitis vinifera OX=29760 GN=VIT_06s0004g03170 PE=3 SV=1)

HSP 1 Score: 689.5 bits (1778), Expect = 5.3e-195
Identity = 343/478 (71.76%), Postives = 380/478 (79.50%), Query Frame = 0


Query: 2   NNGENRRLNG---EADXXXXXXXANGLAAWERTYADDRSWEALQEDESGLLRPIDNKAIY 61
           N+GE RRL+G      XXXXXXX   L AWER YAD+RSWE+LQEDESGLLRPIDNK IY
Sbjct: 10  NDGEGRRLDGXXXXXXXXXXXXXXXXLDAWERAYADERSWESLQEDESGLLRPIDNKTIY 69

Query: 62  HAQYRRRLRTLSSLATTARIQKGLIRYLYIVIDFSKAATEMDFRPSRMAVVAKHVDAFVR 121
           HAQYRRR+R+L S  TTARIQKGLIRYLYIV+D S+AA+EMDF+PSRMAVVAKH++AF+R
Sbjct: 70  HAQYRRRIRSLYSSTTTARIQKGLIRYLYIVVDLSRAASEMDFKPSRMAVVAKHIEAFIR 129

Query: 122 EFFDQNPLSQIGLVTIKDGFANCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHSY 181
           EFFDQNPLSQIGLVTIKDG A CLTDLGGSP+SHVKALMGKLECSGD+SLQN L+LVH Y
Sbjct: 130 EFFDQNPLSQIGLVTIKDGLAQCLTDLGGSPDSHVKALMGKLECSGDSSLQNALDLVHGY 189

Query: 182 LNQIPSYGHREVLVLYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQET 241
           LNQIPSYGHREVL+LYSAL++CDPGDIMET+Q+CK SKIRCSVIGL+AEIFICRHLCQET
Sbjct: 190 LNQIPSYGHREVLILYSALSTCDPGDIMETIQECKKSKIRCSVIGLSAEIFICRHLCQET 249

Query: 242 GGSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKV 301
           GGSYSVALDESHFKELLLEHAPPPPAIA+ A+ NLIKMGFPQRAAE  I+ICSCHKEAKV
Sbjct: 250 GGSYSVALDESHFKELLLEHAPPPPAIAEFAIANLIKMGFPQRAAEGVISICSCHKEAKV 309

Query: 302 GGGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQ 361
           GGGYTCPRCKARVCELPTECRICGLTL+SSPHLARSYHHLFPI PFDEVS  + ++P  +
Sbjct: 310 GGGYTCPRCKARVCELPTECRICGLTLVSSPHLARSYHHLFPIPPFDEVSLSLLNNPHQR 369

Query: 362 LPKVCFGCQESLMNPKSDDLKIKNIFIVFTTSCLLVPCNVRLLKQKMLCIRDLPHFLFVF 421
             + CFGCQESL+ P                                             
Sbjct: 370 SSRACFGCQESLLIP--------------------------------------------- 429

Query: 422 WSFFNINYCTGNSPSIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKLATSDE 477
                     GN P++ V+CPKCKQHFCLDCDIYIHESLHNCPGCESFR  K+ +  E
Sbjct: 430 ----------GNKPTLCVACPKCKQHFCLDCDIYIHESLHNCPGCESFRHSKIVSVTE 432

The following BLAST results are available for this feature:

BLAST of CsGy5G005330 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143721.1	8.2e-240	88.66	PREDICTED: general transcription factor IIH subunit 2 [Cucumis sativus] >KGN5037...	[more]
XP_008467294.1	4.0e-234	86.97	PREDICTED: general transcription factor IIH subunit 2 [Cucumis melo]	[more]
XP_022949453.1	1.2e-222	82.39	general transcription factor IIH subunit 2 [Cucurbita moschata] >XP_023525764.1 ...	[more]
XP_022157930.1	4.5e-222	82.60	general transcription factor IIH subunit 2 [Momordica charantia]	[more]
XP_022998882.1	5.9e-222	82.18	general transcription factor IIH subunit 2 [Cucurbita maxima]	[more]

BLAST of CsGy5G005330 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G05055.1	9.5e-182	68.22	general transcription factor II H2	[more]

BLAST of CsGy5G005330 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9ZVN9\|TF2H2_ARATH	1.7e-180	68.22	General transcription factor IIH subunit 2 OS=Arabidopsis thaliana OX=3702 GN=GT...	[more]
sp\|Q2TBV5\|TF2H2_BOVIN	3.9e-84	36.30	General transcription factor IIH subunit 2 OS=Bos taurus OX=9913 GN=GTF2H2 PE=2 ...	[more]
sp\|A0JN27\|TF2H2_RAT	2.5e-83	36.44	General transcription factor IIH subunit 2 OS=Rattus norvegicus OX=10116 GN=Gtf2...	[more]
sp\|O74995\|TFH47_SCHPO	2.2e-82	36.88	General transcription and DNA repair factor IIH subunit ssl1 OS=Schizosaccharomy...	[more]
sp\|Q9JIB4\|TF2H2_MOUSE	5.3e-81	35.78	General transcription factor IIH subunit 2 OS=Mus musculus OX=10090 GN=Gtf2h2 PE...	[more]

BLAST of CsGy5G005330 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KPM4\|A0A0A0KPM4_CUCSA	5.4e-240	88.66	General transcription factor IIH subunit OS=Cucumis sativus OX=3659 GN=Csa_5G169...	[more]
tr\|A0A1S3CUH8\|A0A1S3CUH8_CUCME	2.6e-234	86.97	General transcription factor IIH subunit OS=Cucumis melo OX=3656 GN=LOC103504674...	[more]
tr\|A0A2P4M9Z7\|A0A2P4M9Z7_QUESU	1.1e-203	72.33	General transcription factor IIH subunit OS=Quercus suber OX=58331 GN=CFP56_7578...	[more]
tr\|A0A2P5E4E9\|A0A2P5E4E9_9ROSA	2.4e-195	72.38	General transcription factor IIH subunit OS=Trema orientalis OX=63057 GN=TorRG33...	[more]
tr\|F6GTZ1\|F6GTZ1_VITVI	5.3e-195	71.76	General transcription factor IIH subunit OS=Vitis vinifera OX=29760 GN=VIT_06s00...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0008270	zinc ion binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006289	nucleotide-excision repair
GO:0006351	transcription, DNA-templated
GO:0006281	DNA repair

Vocabulary: **Cellular Component**
Term	Definition
GO:0000439	core TFIIH complex

Vocabulary: **INTERPRO**
Term	Definition
IPR013087	Znf_C2H2_type
IPR036465	vWFA_dom_sf
IPR007198	Ssl1-like
IPR013083	Znf_RING/FYVE/PHD
IPR012170	TFIIH_SSL1/p44
IPR004595	TFIIH_C1-like_dom
IPR002035	VWF_A

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006289	nucleotide-excision repair
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0006281	DNA repair
cellular_component	GO:0000439	core TFIIH complex
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G005330.1	CsGy5G005330.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002035	von Willebrand factor, type A	SMART	SM00327	VWA_4	coord: 83..259 e-value: 1.7E-9 score: 47.5
IPR002035	von Willebrand factor, type A	PROSITE	PS50234	VWFA	coord: 85..224 score: 8.58
IPR004595	TFIIH C1-like domain	SMART	SM01047	C1_4_2	coord: 427..465 e-value: 2.1E-14 score: 63.9
IPR004595	TFIIH C1-like domain	PFAM	PF07975	C1_4	coord: 431..465 e-value: 5.9E-17 score: 61.5
IPR012170	TFIIH subunit Ssl1/p44	TIGRFAM	TIGR00622	TIGR00622	coord: 433..465 e-value: 3.2E-12 score: 45.1 coord: 301..380 e-value: 4.6E-23 score: 80.0
IPR012170	TFIIH subunit Ssl1/p44	PIRSF	PIRSF015919	TFIIH_SSL1	coord: 1..466 e-value: 2.9E-159 score: 528.3
IPR012170	TFIIH subunit Ssl1/p44	PANTHER	PTHR12695	GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 2	coord: 18..465
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 423..463 e-value: 1.3E-14 score: 56.0
IPR007198	Ssl1-like	PFAM	PF04056	Ssl1	coord: 89..279 e-value: 2.7E-84 score: 281.7
IPR007198	Ssl1-like	CDD	cd01453	vWA_transcription_factor_IIH_type	coord: 81..263 e-value: 6.05023E-98 score: 294.238
IPR036465	von Willebrand factor A-like domain superfamily	GENE3D	G3DSA:3.40.50.410		coord: 79..264 e-value: 3.9E-69 score: 234.0
IPR036465	von Willebrand factor A-like domain superfamily	SUPERFAMILY	SSF53300	vWA-like	coord: 80..248
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	SUPERFAMILY	SSF57889	Cysteine-rich domain	coord: 336..372 coord: 433..464
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 438..458

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy5G005330	Csa5G169080	Cucumber (Chinese Long) v2	cgybcuB224
CsGy5G005330	MELO3C005421	Melon (DHL92) v3.5.1	cgybmeB301
CsGy5G005330	CSPI05G07930	Wild cucumber (PI 183967)	cgybcpiB226
CsGy5G005330	MELO3C005421.2	Melon (DHL92) v3.6.1	cgybmedB301
CsGy5G005330	CsaV3_5G005370	Cucumber (Chinese Long) v3	cgybcucB232
CsGy5G005330	Bhi12G000613	Wax gourd	cgybwgoB433

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy5G005330	Watermelon (97103) v2	cgybwmbB319
CsGy5G005330	Wax gourd	cgybwgoB414
CsGy5G005330	Wax gourd	cgybwgoB419
CsGy5G005330	Cucurbita maxima (Rimu)	cgybcmaB601
CsGy5G005330	Cucurbita maxima (Rimu)	cgybcmaB636
CsGy5G005330	Cucurbita moschata (Rifu)	cgybcmoB573
CsGy5G005330	Cucurbita moschata (Rifu)	cgybcmoB614
CsGy5G005330	Cucurbita pepo (Zucchini)	cgybcpeB608
CsGy5G005330	Cucurbita pepo (Zucchini)	cgybcpeB692
CsGy5G005330	Bottle gourd (USVL1VR-Ls)	cgyblsiB294
CsGy5G005330	Bottle gourd (USVL1VR-Ls)	cgyblsiB346
CsGy5G005330	Melon (DHL92) v3.5.1	cgybmeB350
CsGy5G005330	Watermelon (Charleston Gray)	cgybwcgB332
CsGy5G005330	Watermelon (97103) v1	cgybwmB376
CsGy5G005330	Watermelon (97103) v1	cgybwmB388
CsGy5G005330	Silver-seed gourd	carcgybB0711
CsGy5G005330	Silver-seed gourd	carcgybB1018