CsGy5G004080 (gene) Cucumber (Gy14) v2

Overview
NameCsGy5G004080
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionL-lactate dehydrogenase
LocationChr5 : 2738870 .. 2739806 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGCATACGATTGGTGGCCAACGACCAAATGTGTAATGGTTGATAGAGGTAAACGGTGGAGAGGTGGAACGATATTGAACGACAAATTGGTGTGCATGGAGTAGTGCTAGTTGTTTGAAGAGATGAGGGGAGGAATTTACTACACTTCTAATAGAAGAATTAGACGAAGGTTTTGTTATTATTATTATTCTAAATTTGTTATTTTAATTCAAAATATAGGATTGAAAGTTTTAAAAGTAAAAAGATATAAATACTAAAGCACTTCAAGTGAAAGATATAGTATGTTGGTGATCGGAAGATCCTATCACCACATGTACGTGTAATGTATAAAACTTATACTAACGATATCAACTTTGTATTACACCAATCCATGCAAAAAAAAAAAAATAAAGAAAATTTTTCTTCTTCTTCATCCTTTCTAACGCAATCCCCATTCAAAATCCGCCAAGTTATCTGCAACACAAAACTCCACCGCCAATCACAATCTCCAAAACCCTTTTTCACAATGCAGAAAAGTCCCTCAACCTCCTCCTTAGGTCTCGACGGCCTCGACCTTTCTCAAGCCTTATTCAAACCAATCCCCAACGCCTCTCCTCTATCCACCTCAAATCGCAACACCAAAATCTTCGCGGCGAAATGCTAGATCTCCAACACGCTGCTGTTTTTCTCCCTCGTACAAACATCAGCGCCTCCACTGATTACTCCATTACTGCTGGATCTGATATGTGTATTGTTACTGATGGTGCTCGGCAGATCGTCGGTGAATCTAGGTTGAATCTGTTGTAGAGGAATGTTGCTCTGTTTCAGAAGATCGTTCCGTCGTTGGTTCAGTTCTCTCCTAAGATGATTCTTTTGATTGTTTCGAATCTGGTGGATGTTTTGACTTATGTTGCTTGGAAACTCTCTGGTTTTCCGTCGAATCGTGTGATTTGA

mRNA sequence

ATGGATGCATACGATTGGTGGCCAACGACCAAATGTGTAATGGTTGATAGAGGTAAACGGTGGAGAGGTGGAACGATATTGAACGACAAATTGGTGTGCATGGAAAAATTTTTCTTCTTCTTCATCCTTTCTAACGCAATCCCCATTCAAAATCCGCCAAGTTATCTGCAACACAAAACTCCACCGCCAATCACAATCTCCAAAACCCTTTTTCACAATGCAGAAAAGTCCCTCAACCTCCTCCTTAGGTCTCGACGGCCTCGACCTTTCTCAAGCCTTATTCAAACCAATCCCCAACGCCTCTCCTCTATCCACCTCAAATCGCAACACCAAAATCTTCGCGGCGAAATGCTAGATCTCCAACACGCTGCTGTTTTTCTCCCTCGTACAAACATCAGCGCCTCCACTGATTACTCCATTACTGCTGGATCTGATATGTGTATTGTTACTGATGGTGCTCGGCAGATCGTCGGTGAATCTAGGAATGTTGCTCTGTTTCAGAAGATCGTTCCGTCGTTGGTTCAGTTCTCTCCTAAGATGATTCTTTTGATTGTTTCGAATCTGGTGGATGTTTTGACTTATGTTGCTTGGAAACTCTCTGGTTTTCCGTCGAATCGTGTGATTTGA

Coding sequence (CDS)

ATGGATGCATACGATTGGTGGCCAACGACCAAATGTGTAATGGTTGATAGAGGTAAACGGTGGAGAGGTGGAACGATATTGAACGACAAATTGGTGTGCATGGAAAAATTTTTCTTCTTCTTCATCCTTTCTAACGCAATCCCCATTCAAAATCCGCCAAGTTATCTGCAACACAAAACTCCACCGCCAATCACAATCTCCAAAACCCTTTTTCACAATGCAGAAAAGTCCCTCAACCTCCTCCTTAGGTCTCGACGGCCTCGACCTTTCTCAAGCCTTATTCAAACCAATCCCCAACGCCTCTCCTCTATCCACCTCAAATCGCAACACCAAAATCTTCGCGGCGAAATGCTAGATCTCCAACACGCTGCTGTTTTTCTCCCTCGTACAAACATCAGCGCCTCCACTGATTACTCCATTACTGCTGGATCTGATATGTGTATTGTTACTGATGGTGCTCGGCAGATCGTCGGTGAATCTAGGAATGTTGCTCTGTTTCAGAAGATCGTTCCGTCGTTGGTTCAGTTCTCTCCTAAGATGATTCTTTTGATTGTTTCGAATCTGGTGGATGTTTTGACTTATGTTGCTTGGAAACTCTCTGGTTTTCCGTCGAATCGTGTGATTTGA

Protein sequence

MDAYDWWPTTKCVMVDRGKRWRGGTILNDKLVCMEKFFFFFILSNAIPIQNPPSYLQHKTPPPITISKTLFHNAEKSLNLLLRSRRPRPFSSLIQTNPQRLSSIHLKSQHQNLRGEMLDLQHAAVFLPRTNISASTDYSITAGSDMCIVTDGARQIVGESRNVALFQKIVPSLVQFSPKMILLIVSNLVDVLTYVAWKLSGFPSNRVI
Homology
[Close]
BLAST of CsGy5G004080 vs. NCBI nr
Match: KGN50242.1 (hypothetical protein Csa_5G161910 [Cucumis sativus])

HSP 1 Score: 259.2 bits (661), Expect = 1.2e-65
Identity = 147/208 (70.67%), Postives = 147/208 (70.67%), Query Frame = 0 

Query: 1   MDAYDWWPTTKCVMVDRGKRWRGGTILNDKLVCMEKFFFFFILSNAIPIQNPPSYLQHKT 60
           MDAYDWWPTTKCVMVDR                                           
Sbjct: 1   MDAYDWWPTTKCVMVDR------------------------------------------- 60

Query: 61  PPPITISKTLFHNAEKSLNLLLRSRRPRPFSSLIQTNPQRLSSIHLKSQHQNLRGEMLDL 120
                         EKSLNLLLRSRRPRPFSSLIQTNPQRLSSIHLKSQHQNLRGEMLDL
Sbjct: 61  --------------EKSLNLLLRSRRPRPFSSLIQTNPQRLSSIHLKSQHQNLRGEMLDL 120

Query: 121 QHAAVFLPRTNISASTDYSITAGSDMCIVTDGARQIVGESRNVALFQKIVPSLVQFSPKM 180
           QHAAVFLPRTNISASTDYSITAGSDMCIVTDGARQI    RNVALFQKIVPSLVQFSPKM
Sbjct: 121 QHAAVFLPRTNISASTDYSITAGSDMCIVTDGARQI----RNVALFQKIVPSLVQFSPKM 147

Query: 181 ILLIVSNLVDVLTYVAWKLSGFPSNRVI 209
           ILLIVSNLVDVLTYVAWKLSGFPSNRVI
Sbjct: 181 ILLIVSNLVDVLTYVAWKLSGFPSNRVI 147

[Close]
BLAST of CsGy5G004080 vs. NCBI nr
Match: KGN50245.1 (hypothetical protein Csa_5G161940 [Cucumis sativus])

HSP 1 Score: 161.4 bits (407), Expect = 3.3e-36
Identity = 86/102 (84.31%), Postives = 89/102 (87.25%), Query Frame = 0 

Query: 113 LRGEMLDLQHAAVFLPRTNISASTDYSITAGSDMCIVTDGARQIVGES------RNVALF 172
           LRGEMLDLQHAA FLPRT ISASTDYSITAGSD+CIVT GARQI GES      RNVALF
Sbjct: 75  LRGEMLDLQHAAAFLPRTKISASTDYSITAGSDLCIVTGGARQIAGESRLNLLQRNVALF 134

Query: 173 QKIVPSLVQFSPKMILLIVSNLVDVLTYVAWKLSGFPSNRVI 209
           QKIVP LVQFSP+ ILLIVSN VDVLTY+AWKLSGFPSNRVI
Sbjct: 135 QKIVPPLVQFSPETILLIVSNPVDVLTYIAWKLSGFPSNRVI 176

[Close]
BLAST of CsGy5G004080 vs. NCBI nr
Match: XP_004151663.2 (PREDICTED: LOW QUALITY PROTEIN: L-lactate dehydrogenase A-like [Cucumis sativus])

HSP 1 Score: 161.4 bits (407), Expect = 3.3e-36
Identity = 86/102 (84.31%), Postives = 89/102 (87.25%), Query Frame = 0 

Query: 113 LRGEMLDLQHAAVFLPRTNISASTDYSITAGSDMCIVTDGARQIVGES------RNVALF 172
           LRGEMLDLQHAA FLPRT ISASTDYSITAGSD+CIVT GARQI GES      RNVALF
Sbjct: 75  LRGEMLDLQHAAAFLPRTKISASTDYSITAGSDLCIVTGGARQIAGESRLNLLQRNVALF 134

Query: 173 QKIVPSLVQFSPKMILLIVSNLVDVLTYVAWKLSGFPSNRVI 209
           QKIVP LVQFSP+ ILLIVSN VDVLTY+AWKLSGFPSNRVI
Sbjct: 135 QKIVPPLVQFSPETILLIVSNPVDVLTYIAWKLSGFPSNRVI 176

[Close]
BLAST of CsGy5G004080 vs. NCBI nr
Match: XP_022958393.1 (L-lactate dehydrogenase A-like [Cucurbita moschata])

HSP 1 Score: 159.1 bits (401), Expect = 1.7e-35
Identity = 86/102 (84.31%), Postives = 88/102 (86.27%), Query Frame = 0 

Query: 113 LRGEMLDLQHAAVFLPRTNISASTDYSITAGSDMCIVTDGARQIVGES------RNVALF 172
           LRGEMLDLQHAA FLPRT ISASTDYSITAGSD+CIVT GARQI GES      RNVALF
Sbjct: 75  LRGEMLDLQHAAAFLPRTKISASTDYSITAGSDLCIVTVGARQIAGESRLNLLQRNVALF 134

Query: 173 QKIVPSLVQFSPKMILLIVSNLVDVLTYVAWKLSGFPSNRVI 209
           QKIVP LVQ+SP  ILLIVSN VDVLTYVAWKLSGFPSNRVI
Sbjct: 135 QKIVPPLVQYSPDTILLIVSNPVDVLTYVAWKLSGFPSNRVI 176

[Close]
BLAST of CsGy5G004080 vs. NCBI nr
Match: XP_023534013.1 (L-lactate dehydrogenase A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 157.9 bits (398), Expect = 3.7e-35
Identity = 84/102 (82.35%), Postives = 88/102 (86.27%), Query Frame = 0 

Query: 113 LRGEMLDLQHAAVFLPRTNISASTDYSITAGSDMCIVTDGARQIVGES------RNVALF 172
           LRGEMLDLQHAA FLPRT I+ASTDYSITAGSD+CIVT GARQI GES      RNVALF
Sbjct: 75  LRGEMLDLQHAAAFLPRTKINASTDYSITAGSDLCIVTAGARQIAGESRLNLLQRNVALF 134

Query: 173 QKIVPSLVQFSPKMILLIVSNLVDVLTYVAWKLSGFPSNRVI 209
           QKIVP LVQ+SP  ILL+VSN VDVLTYVAWKLSGFPSNRVI
Sbjct: 135 QKIVPPLVQYSPDTILLVVSNPVDVLTYVAWKLSGFPSNRVI 176

[Close]
BLAST of CsGy5G004080 vs. TAIR10
Match: AT4G17260.1 (Lactate/malate dehydrogenase family protein)

HSP 1 Score: 137.9 bits (346), Expect = 7.2e-33
Identity = 73/102 (71.57%), Postives = 81/102 (79.41%), Query Frame = 0 

Query: 113 LRGEMLDLQHAAVFLPRTNISASTDYSITAGSDMCIVTDGARQIVGES------RNVALF 172
           LRGEMLDLQHAA FLPRT I+AS DY +TAGSD+CIVT GARQ  GES      RNVALF
Sbjct: 78  LRGEMLDLQHAAAFLPRTKITASVDYEVTAGSDLCIVTAGARQNPGESRLNLLQRNVALF 137

Query: 173 QKIVPSLVQFSPKMILLIVSNLVDVLTYVAWKLSGFPSNRVI 209
           + I+P L + SP  IL+IVSN VDVLTYVAWKLSGFP NRV+
Sbjct: 138 RHIIPPLAKASPDSILIIVSNPVDVLTYVAWKLSGFPVNRVL 179

[Close]
BLAST of CsGy5G004080 vs. Swiss-Prot
Match: sp|P29038|LDH_MAIZE (L-lactate dehydrogenase OS=Zea mays OX=4577 PE=2 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.0e-28
Identity = 69/102 (67.65%), Postives = 80/102 (78.43%), Query Frame = 0 

Query: 113 LRGEMLDLQHAAVFLPRTNISASTDYSITAGSDMCIVTDGARQIVGES------RNVALF 172
           LRGEMLDLQHAA FLPRT + + TD S+T GSD+ IVT GARQI GE+      RNVALF
Sbjct: 79  LRGEMLDLQHAAAFLPRTRLVSGTDMSVTRGSDLVIVTAGARQIQGETRLDLLQRNVALF 138

Query: 173 QKIVPSLVQFSPKMILLIVSNLVDVLTYVAWKLSGFPSNRVI 209
           +KIVP L + S   +LL+VSN VDVLTYVAWKLSGFP++RVI
Sbjct: 139 RKIVPPLAEQSHDALLLVVSNPVDVLTYVAWKLSGFPASRVI 180

[Close]
BLAST of CsGy5G004080 vs. Swiss-Prot
Match: sp|P22989|LDHB_HORVU (L-lactate dehydrogenase B (Fragment) OS=Hordeum vulgare OX=4513 PE=1 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 5.6e-27
Identity = 64/102 (62.75%), Postives = 78/102 (76.47%), Query Frame = 0 

Query: 113 LRGEMLDLQHAAVFLPRTNISASTDYSITAGSDMCIVTDGARQIVGES------RNVALF 172
           LRGE LDLQHAA FLPR  I + TD ++T  SD+ +VT GARQI GE+      RNVAL+
Sbjct: 68  LRGEALDLQHAAAFLPRVRIVSGTDAAVTKNSDLIVVTAGARQIPGETRLNLLQRNVALY 127

Query: 173 QKIVPSLVQFSPKMILLIVSNLVDVLTYVAWKLSGFPSNRVI 209
           +KIVP + + SP  +LL+VSN VDVLTYVAWKLSGFP++RVI
Sbjct: 128 RKIVPPVAEHSPDALLLVVSNPVDVLTYVAWKLSGFPASRVI 169

[Close]
BLAST of CsGy5G004080 vs. Swiss-Prot
Match: sp|P22988|LDHA_HORVU (L-lactate dehydrogenase A OS=Hordeum vulgare OX=4513 PE=1 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.8e-26
Identity = 66/102 (64.71%), Postives = 78/102 (76.47%), Query Frame = 0 

Query: 113 LRGEMLDLQHAAVFLPRTNISASTDYSITAGSDMCIVTDGARQIVGES------RNVALF 172
           LRGE LDLQHAA FLPR  IS  TD ++T  SD+ IVT GARQI GE+      RNVAL+
Sbjct: 81  LRGEALDLQHAAAFLPRVRIS-GTDAAVTKNSDLVIVTAGARQIPGETRLNLLQRNVALY 140

Query: 173 QKIVPSLVQFSPKMILLIVSNLVDVLTYVAWKLSGFPSNRVI 209
           +KIVP + + SP  +LL+VSN VDVLTYVAWKLSGFP++RVI
Sbjct: 141 RKIVPPVAEHSPDALLLVVSNPVDVLTYVAWKLSGFPASRVI 181

[Close]
BLAST of CsGy5G004080 vs. Swiss-Prot
Match: sp|P04642|LDHA_RAT (L-lactate dehydrogenase A chain OS=Rattus norvegicus OX=10116 GN=Ldha PE=1 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.0e-24
Identity = 59/102 (57.84%), Postives = 77/102 (75.49%), Query Frame = 0 

Query: 113 LRGEMLDLQHAAVFLPRTNISASTDYSITAGSDMCIVTDGARQIVGES------RNVALF 172
           L+GEM+DLQH ++FL    I +S DYS+TA S + I+T GARQ  GES      RNV +F
Sbjct: 58  LKGEMMDLQHGSLFLKTPKIVSSKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIF 117

Query: 173 QKIVPSLVQFSPKMILLIVSNLVDVLTYVAWKLSGFPSNRVI 209
           + I+P++V++SP+  LLIVSN VD+LTYVAWK+SGFP NRVI
Sbjct: 118 KFIIPNVVKYSPQCKLLIVSNPVDILTYVAWKISGFPKNRVI 159

[Close]
BLAST of CsGy5G004080 vs. Swiss-Prot
Match: sp|Q9XT87|LDHA_MONDO (L-lactate dehydrogenase A chain OS=Monodelphis domestica OX=13616 GN=LDHA PE=2 SV=3)

HSP 1 Score: 112.8 bits (281), Expect = 4.5e-24
Identity = 57/102 (55.88%), Postives = 76/102 (74.51%), Query Frame = 0 

Query: 113 LRGEMLDLQHAAVFLPRTNISASTDYSITAGSDMCIVTDGARQIVGES------RNVALF 172
           L+GEM+DLQH ++FL    I +S DY++TA S + ++T GARQ  GES      RNV +F
Sbjct: 58  LKGEMMDLQHGSLFLKTPKIVSSKDYAVTANSKLVVITAGARQQEGESRLNLVQRNVNIF 117

Query: 173 QKIVPSLVQFSPKMILLIVSNLVDVLTYVAWKLSGFPSNRVI 209
           + I+P++V++SP   LL+VSN VD+LTYVAWKLSGFP NRVI
Sbjct: 118 KFIIPNIVKYSPNCKLLVVSNPVDILTYVAWKLSGFPKNRVI 159

[Close]
BLAST of CsGy5G004080 vs. TrEMBL
Match: tr|A0A0A0KP88|A0A0A0KP88_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G161910 PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 7.8e-66
Identity = 147/208 (70.67%), Postives = 147/208 (70.67%), Query Frame = 0 

Query: 1   MDAYDWWPTTKCVMVDRGKRWRGGTILNDKLVCMEKFFFFFILSNAIPIQNPPSYLQHKT 60
           MDAYDWWPTTKCVMVDR                                           
Sbjct: 1   MDAYDWWPTTKCVMVDR------------------------------------------- 60

Query: 61  PPPITISKTLFHNAEKSLNLLLRSRRPRPFSSLIQTNPQRLSSIHLKSQHQNLRGEMLDL 120
                         EKSLNLLLRSRRPRPFSSLIQTNPQRLSSIHLKSQHQNLRGEMLDL
Sbjct: 61  --------------EKSLNLLLRSRRPRPFSSLIQTNPQRLSSIHLKSQHQNLRGEMLDL 120

Query: 121 QHAAVFLPRTNISASTDYSITAGSDMCIVTDGARQIVGESRNVALFQKIVPSLVQFSPKM 180
           QHAAVFLPRTNISASTDYSITAGSDMCIVTDGARQI    RNVALFQKIVPSLVQFSPKM
Sbjct: 121 QHAAVFLPRTNISASTDYSITAGSDMCIVTDGARQI----RNVALFQKIVPSLVQFSPKM 147

Query: 181 ILLIVSNLVDVLTYVAWKLSGFPSNRVI 209
           ILLIVSNLVDVLTYVAWKLSGFPSNRVI
Sbjct: 181 ILLIVSNLVDVLTYVAWKLSGFPSNRVI 147

[Close]
BLAST of CsGy5G004080 vs. TrEMBL
Match: tr|A0A0A0KKM5|A0A0A0KKM5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G161940 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 2.2e-36
Identity = 86/102 (84.31%), Postives = 89/102 (87.25%), Query Frame = 0 

Query: 113 LRGEMLDLQHAAVFLPRTNISASTDYSITAGSDMCIVTDGARQIVGES------RNVALF 172
           LRGEMLDLQHAA FLPRT ISASTDYSITAGSD+CIVT GARQI GES      RNVALF
Sbjct: 75  LRGEMLDLQHAAAFLPRTKISASTDYSITAGSDLCIVTGGARQIAGESRLNLLQRNVALF 134

Query: 173 QKIVPSLVQFSPKMILLIVSNLVDVLTYVAWKLSGFPSNRVI 209
           QKIVP LVQFSP+ ILLIVSN VDVLTY+AWKLSGFPSNRVI
Sbjct: 135 QKIVPPLVQFSPETILLIVSNPVDVLTYIAWKLSGFPSNRVI 176

[Close]
BLAST of CsGy5G004080 vs. TrEMBL
Match: tr|A0A1S3ATB9|A0A1S3ATB9_CUCME (L-lactate dehydrogenase OS=Cucumis melo OX=3656 GN=LOC103482619 PE=3 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 3.2e-35
Identity = 85/102 (83.33%), Postives = 88/102 (86.27%), Query Frame = 0 

Query: 113 LRGEMLDLQHAAVFLPRTNISASTDYSITAGSDMCIVTDGARQIVGES------RNVALF 172
           LRGEMLDLQHAA FLPRT ISASTDYS TAGS++CIVT GARQI GES      RNVALF
Sbjct: 75  LRGEMLDLQHAAAFLPRTKISASTDYSTTAGSNLCIVTAGARQIAGESRLNLLQRNVALF 134

Query: 173 QKIVPSLVQFSPKMILLIVSNLVDVLTYVAWKLSGFPSNRVI 209
           QKIVP LVQFSP+ ILLIVSN VDVLTYVAWKLSGFPSNRVI
Sbjct: 135 QKIVPPLVQFSPETILLIVSNPVDVLTYVAWKLSGFPSNRVI 176

[Close]
BLAST of CsGy5G004080 vs. TrEMBL
Match: tr|A0A1S3VMQ5|A0A1S3VMQ5_VIGRR (L-lactate dehydrogenase OS=Vigna radiata var. radiata OX=3916 GN=LOC106776606 PE=3 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 6.0e-34
Identity = 82/102 (80.39%), Postives = 86/102 (84.31%), Query Frame = 0 

Query: 113 LRGEMLDLQHAAVFLPRTNISASTDYSITAGSDMCIVTDGARQIVGES------RNVALF 172
           LRGEMLDLQHAA FLPRT I ASTDYSITAGSD+CIVT GARQI GES      RNV LF
Sbjct: 75  LRGEMLDLQHAAAFLPRTRIQASTDYSITAGSDLCIVTAGARQIHGESRLNLLQRNVTLF 134

Query: 173 QKIVPSLVQFSPKMILLIVSNLVDVLTYVAWKLSGFPSNRVI 209
           QKI+P LV++SP  ILLIVSN VDVLTYVAWKLSGFPSNRVI
Sbjct: 135 QKIIPPLVRYSPDTILLIVSNPVDVLTYVAWKLSGFPSNRVI 176

[Close]
BLAST of CsGy5G004080 vs. TrEMBL
Match: tr|A0A0A0KKU9|A0A0A0KKU9_CUCSA (L-lactate dehydrogenase OS=Cucumis sativus OX=3659 GN=Csa_5G161920 PE=3 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 6.0e-34
Identity = 84/102 (82.35%), Postives = 86/102 (84.31%), Query Frame = 0 

Query: 113 LRGEMLDLQHAAVFLPRTNISASTDYSITAGSDMCIVTDGARQIVGES------RNVALF 172
           LRGEMLDLQHAA FLPRT ISASTDYSITA SD+CIVT GARQI GES      RNV LF
Sbjct: 137 LRGEMLDLQHAAAFLPRTKISASTDYSITARSDLCIVTAGARQIAGESRLNLLQRNVTLF 196

Query: 173 QKIVPSLVQFSPKMILLIVSNLVDVLTYVAWKLSGFPSNRVI 209
           QKIVP LVQFSP+ ILLIVSN VDVLTYVAWKLSGF SNRVI
Sbjct: 197 QKIVPLLVQFSPETILLIVSNPVDVLTYVAWKLSGFSSNRVI 238

The following BLAST results are available for this feature:
BLAST of CsGy5G004080 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN50242.11.2e-6570.67hypothetical protein Csa_5G161910 [Cucumis sativus][more]
KGN50245.13.3e-3684.31hypothetical protein Csa_5G161940 [Cucumis sativus][more]
XP_004151663.23.3e-3684.31PREDICTED: LOW QUALITY PROTEIN: L-lactate dehydrogenase A-like [Cucumis sativus][more]
XP_022958393.11.7e-3584.31L-lactate dehydrogenase A-like [Cucurbita moschata][more]
XP_023534013.13.7e-3582.35L-lactate dehydrogenase A-like [Cucurbita pepo subsp. pepo][more]
BLAST of CsGy5G004080 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G17260.17.2e-3371.57Lactate/malate dehydrogenase family protein[more]
BLAST of CsGy5G004080 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P29038|LDH_MAIZE1.0e-2867.65L-lactate dehydrogenase OS=Zea mays OX=4577 PE=2 SV=1[more]
sp|P22989|LDHB_HORVU5.6e-2762.75L-lactate dehydrogenase B (Fragment) OS=Hordeum vulgare OX=4513 PE=1 SV=1[more]
sp|P22988|LDHA_HORVU2.8e-2664.71L-lactate dehydrogenase A OS=Hordeum vulgare OX=4513 PE=1 SV=1[more]
sp|P04642|LDHA_RAT2.0e-2457.84L-lactate dehydrogenase A chain OS=Rattus norvegicus OX=10116 GN=Ldha PE=1 SV=1[more]
sp|Q9XT87|LDHA_MONDO4.5e-2455.88L-lactate dehydrogenase A chain OS=Monodelphis domestica OX=13616 GN=LDHA PE=2 S... [more]
BLAST of CsGy5G004080 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KP88|A0A0A0KP88_CUCSA7.8e-6670.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G161910 PE=4 SV=1[more]
tr|A0A0A0KKM5|A0A0A0KKM5_CUCSA2.2e-3684.31Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G161940 PE=4 SV=1[more]
tr|A0A1S3ATB9|A0A1S3ATB9_CUCME3.2e-3583.33L-lactate dehydrogenase OS=Cucumis melo OX=3656 GN=LOC103482619 PE=3 SV=1[more]
tr|A0A1S3VMQ5|A0A1S3VMQ5_VIGRR6.0e-3480.39L-lactate dehydrogenase OS=Vigna radiata var. radiata OX=3916 GN=LOC106776606 PE... [more]
tr|A0A0A0KKU9|A0A0A0KKU9_CUCSA6.0e-3482.35L-lactate dehydrogenase OS=Cucumis sativus OX=3659 GN=Csa_5G161920 PE=3 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
GO:0016616oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0019752carboxylic acid metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR036291NAD(P)-bd_dom_sf
IPR001236Lactate/malate_DH_N
IPR001557L-lactate/malate_DH
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0019752 carboxylic acid metabolic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0009737 response to abscisic acid
biological_process GO:0009651 response to salt stress
biological_process GO:0006534 cysteine metabolic process
biological_process GO:0006094 gluconeogenesis
biological_process GO:0006096 glycolytic process
cellular_component GO:0005829 cytosol
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005737 cytoplasm
molecular_function GO:0004459 L-lactate dehydrogenase activity
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy5G004080.1CsGy5G004080.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001557L-lactate/malate dehydrogenasePRINTSPR00086LLDHDRGNASEcoord: 183..203
score: 67.04
coord: 102..126
score: 29.31
IPR001236Lactate/malate dehydrogenase, N-terminalPFAMPF00056Ldh_1_Ncoord: 104..208
e-value: 2.2E-20
score: 73.1
NoneNo IPR availableGENE3DG3DSA:3.40.50.720coord: 91..208
e-value: 3.2E-32
score: 113.4
NoneNo IPR availablePANTHERPTHR43128:SF12SUBFAMILY NOT NAMEDcoord: 105..208
NoneNo IPR availablePANTHERPTHR43128FAMILY NOT NAMEDcoord: 105..208
IPR036291NAD(P)-binding domain superfamilySUPERFAMILYSSF51735NAD(P)-binding Rossmann-fold domainscoord: 109..208

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy5G004080Cla011577Watermelon (97103) v1cgybwmB381
CsGy5G004080Csa5G161910Cucumber (Chinese Long) v2cgybcuB224
CsGy5G004080MELO3C005539Melon (DHL92) v3.5.1cgybmeB298
CsGy5G004080ClCG01G003970Watermelon (Charleston Gray)cgybwcgB332
CsGy5G004080CSPI05G06740Wild cucumber (PI 183967)cgybcpiB226
CsGy5G004080CmaCh15G011280Cucurbita maxima (Rimu)cgybcmaB608
CsGy5G004080CmaCh02G015450Cucurbita maxima (Rimu)cgybcmaB640
CsGy5G004080CmoCh15G011870Cucurbita moschata (Rifu)cgybcmoB583
CsGy5G004080Lsi09G004170Bottle gourd (USVL1VR-Ls)cgyblsiB294
CsGy5G004080Cp4.1LG13g02350Cucurbita pepo (Zucchini)cgybcpeB597
CsGy5G004080MELO3C005539.2Melon (DHL92) v3.6.1cgybmedB298
CsGy5G004080CsaV3_5G004150Cucumber (Chinese Long) v3cgybcucB232
CsGy5G004080Cla97C01G004140Watermelon (97103) v2cgybwmbB319
CsGy5G004080Bhi12G000410Wax gourdcgybwgoB414
CsGy5G004080Carg02443Silver-seed gourdcarcgybB0911
CsGy5G004080Carg23210Silver-seed gourdcarcgybB0549
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy5G004080Cucumber (Gy14) v2cgybcgybB090
CsGy5G004080Cucurbita maxima (Rimu)cgybcmaB695
CsGy5G004080Cucurbita moschata (Rifu)cgybcmoB619
CsGy5G004080Cucurbita moschata (Rifu)cgybcmoB675
CsGy5G004080Cucurbita pepo (Zucchini)cgybcpeB687
CsGy5G004080Cucurbita pepo (Zucchini)cgybcpeB702
CsGy5G004080Cucumber (Chinese Long) v2cgybcuB211
CsGy5G004080Bottle gourd (USVL1VR-Ls)cgyblsiB352
CsGy5G004080Melon (DHL92) v3.5.1cgybmeB348
CsGy5G004080Watermelon (Charleston Gray)cgybwcgB326
CsGy5G004080Watermelon (97103) v1cgybwmB348
CsGy5G004080Wild cucumber (PI 183967)cgybcpiB212
CsGy5G004080Watermelon (97103) v2cgybwmbB339