CsGy5G002960 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy5G002960
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	CLAVATA3/ESR-RELATED 14
Location	Chr5 : 1928189 .. 1928458 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCTCAAAACTCCATTCCTCCTAATTCTCTCTTCCTCTTCCTCTTCATGATTCTCCTCACCACCACCACCCCTCTCCACGCCGCCCGCCGTCCACCCACCTCCGCCCCACAACCGGAAAACGATTCTCTCAGTCTCCACCCACCCACCACCTCAACATTTTCATTCACGCAGCCGCCGGCCGCCGTGGAAGACCAAATCACTTCCCGAAACTACGGCGTTTCACTCCGCAAAGTCCCCGCCGGTCCCAACCCACTTCATAACTAA

mRNA sequence

ATGGCTTCTCAAAACTCCATTCCTCCTAATTCTCTCTTCCTCTTCCTCTTCATGATTCTCCTCACCACCACCACCCCTCTCCACGCCGCCCGCCGTCCACCCACCTCCGCCCCACAACCGGAAAACGATTCTCTCAGTCTCCACCCACCCACCACCTCAACATTTTCATTCACGCAGCCGCCGGCCGCCGTGGAAGACCAAATCACTTCCCGAAACTACGGCGTTTCACTCCGCAAAGTCCCCGCCGGTCCCAACCCACTTCATAACTAA

Coding sequence (CDS)

ATGGCTTCTCAAAACTCCATTCCTCCTAATTCTCTCTTCCTCTTCCTCTTCATGATTCTCCTCACCACCACCACCCCTCTCCACGCCGCCCGCCGTCCACCCACCTCCGCCCCACAACCGGAAAACGATTCTCTCAGTCTCCACCCACCCACCACCTCAACATTTTCATTCACGCAGCCGCCGGCCGCCGTGGAAGACCAAATCACTTCCCGAAACTACGGCGTTTCACTCCGCAAAGTCCCCGCCGGTCCCAACCCACTTCATAACTAA

Protein sequence

MASQNSIPPNSLFLFLFMILLTTTTPLHAARRPPTSAPQPENDSLSLHPPTTSTFSFTQPPAAVEDQITSRNYGVSLRKVPAGPNPLHN

Homology

[Close]

BLAST of CsGy5G002960 vs. NCBI nr
Match: KGN50125.1 (hypothetical protein Csa_5G154870 [Cucumis sativus])

HSP 1 Score: 146.4 bits (368), Expect = 4.8e-32
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MASQNSIPPNSLFXXXXXXXXXXXXXXXAARRPPTSAPQPENDSLSLHPPTTSTFSFTQP 60
          MASQNSIPPNSLFXXXXXXXXXXXXXXXAARRPPTSAPQPENDSLSLHPPTTSTFSFTQP
Sbjct: 1  MASQNSIPPNSLFXXXXXXXXXXXXXXXAARRPPTSAPQPENDSLSLHPPTTSTFSFTQP 60

Query: 61 PAAVEDQITSRNYGVSLRKVPAGPNPLHN 90
          PAAVEDQITSRNYGVSLRKVPAGPNPLHN
Sbjct: 61 PAAVEDQITSRNYGVSLRKVPAGPNPLHN 89

[Close]

BLAST of CsGy5G002960 vs. TrEMBL
Match: tr|A0A0A0KKA9|A0A0A0KKA9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G154870 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 3.1e-32
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MASQNSIPPNSLFXXXXXXXXXXXXXXXAARRPPTSAPQPENDSLSLHPPTTSTFSFTQP 60
          MASQNSIPPNSLFXXXXXXXXXXXXXXXAARRPPTSAPQPENDSLSLHPPTTSTFSFTQP
Sbjct: 1  MASQNSIPPNSLFXXXXXXXXXXXXXXXAARRPPTSAPQPENDSLSLHPPTTSTFSFTQP 60

Query: 61 PAAVEDQITSRNYGVSLRKVPAGPNPLHN 90
          PAAVEDQITSRNYGVSLRKVPAGPNPLHN
Sbjct: 61 PAAVEDQITSRNYGVSLRKVPAGPNPLHN 89

The following BLAST results are available for this feature:

BLAST of CsGy5G002960 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN50125.1	4.8e-32	100.00	hypothetical protein Csa_5G154870 [Cucumis sativus]	[more]

BLAST of CsGy5G002960 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy5G002960 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy5G002960 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KKA9\|A0A0A0KKA9_CUCSA	3.1e-32	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G154870 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G002960.1	CsGy5G002960.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..89
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..74

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy5G002960	Cla011472	Watermelon (97103) v1	cgybwmB381
CsGy5G002960	Csa5G154870	Cucumber (Chinese Long) v2	cgybcuB224
CsGy5G002960	MELO3C005649	Melon (DHL92) v3.5.1	cgybmeB298
CsGy5G002960	ClCG01G002960	Watermelon (Charleston Gray)	cgybwcgB332
CsGy5G002960	CSPI05G05690	Wild cucumber (PI 183967)	cgybcpiB226
CsGy5G002960	CmaCh02G014740	Cucurbita maxima (Rimu)	cgybcmaB635
CsGy5G002960	CmoCh02G015100	Cucurbita moschata (Rifu)	cgybcmoB613
CsGy5G002960	CmoCh15G012760	Cucurbita moschata (Rifu)	cgybcmoB583
CsGy5G002960	Lsi09G002870	Bottle gourd (USVL1VR-Ls)	cgyblsiB294
CsGy5G002960	MELO3C005649.2	Melon (DHL92) v3.6.1	cgybmedB298
CsGy5G002960	CsaV3_5G003050	Cucumber (Chinese Long) v3	cgybcucB232

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy5G002960	Cucumber (Gy14) v2	cgybcgybB091
CsGy5G002960	Cucurbita maxima (Rimu)	cgybcmaB608
CsGy5G002960	Cucurbita maxima (Rimu)	cgybcmaB621
CsGy5G002960	Cucurbita maxima (Rimu)	cgybcmaB630
CsGy5G002960	Cucurbita moschata (Rifu)	cgybcmoB597
CsGy5G002960	Cucurbita moschata (Rifu)	cgybcmoB606
CsGy5G002960	Cucurbita pepo (Zucchini)	cgybcpeB578
CsGy5G002960	Cucurbita pepo (Zucchini)	cgybcpeB584
CsGy5G002960	Cucurbita pepo (Zucchini)	cgybcpeB597
CsGy5G002960	Cucurbita pepo (Zucchini)	cgybcpeB691
CsGy5G002960	Cucumber (Chinese Long) v2	cgybcuB213
CsGy5G002960	Bottle gourd (USVL1VR-Ls)	cgyblsiB342
CsGy5G002960	Melon (DHL92) v3.5.1	cgybmeB353
CsGy5G002960	Melon (DHL92) v3.6.1	cgybmedB353
CsGy5G002960	Watermelon (Charleston Gray)	cgybwcgB360
CsGy5G002960	Watermelon (97103) v1	cgybwmB378
CsGy5G002960	Wild cucumber (PI 183967)	cgybcpiB213
CsGy5G002960	Silver-seed gourd	carcgybB0912
CsGy5G002960	Silver-seed gourd	carcgybB0927
CsGy5G002960	Cucumber (Chinese Long) v3	cgybcucB216
CsGy5G002960	Watermelon (97103) v2	cgybwmbB319
CsGy5G002960	Watermelon (97103) v2	cgybwmbB367
CsGy5G002960	Wax gourd	cgybwgoB427
CsGy5G002960	Wax gourd	cgybwgoB456