CSPI05G05690 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI05G05690
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr5 : 5219097 .. 5219543 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTTAATAAAATGACACTTCCCACAATTCTCCATTTTCCCATTTTCCCATTTTCAATTCCTTCACTTCTTCTTCTAATTCACTCTCAAAAACCTCTCTCTCTCCTCCATTGAAAAACCTTAATTAGAAACACCTCTCTCAAATAAAAATGGCTTCTCAAAACTCCATTCCTCCTAATTCTCTCTTCCTCTGCCTCTTCATGATTCTCCTCACCACCACCACCCCTCTCCACGCCGCCCGCCGTCCACCCACCTCCGCCCCACAACCGGAAAACGATTCTCTCAGTCTCCACCCACCCACCACCTCAACATTTTCATTCACGCAGCCGCCGGCCGCCGTGGAAGACCAAATCACTTCCCGAAACTACGGCGTTTCACTCCGCAAAGTCCCCGCCGGTCCCAACCCACTTCATAACTAATCGCATCAACCTCCGAAGATCTTAAGGGAA

mRNA sequence

ATGGCTTCTCAAAACTCCATTCCTCCTAATTCTCTCTTCCTCTGCCTCTTCATGATTCTCCTCACCACCACCACCCCTCTCCACGCCGCCCGCCGTCCACCCACCTCCGCCCCACAACCGGAAAACGATTCTCTCAGTCTCCACCCACCCACCACCTCAACATTTTCATTCACGCAGCCGCCGGCCGCCGTGGAAGACCAAATCACTTCCCGAAACTACGGCGTTTCACTCCGCAAAGTCCCCGCCGGTCCCAACCCACTTCATAACTAA

Coding sequence (CDS)

ATGGCTTCTCAAAACTCCATTCCTCCTAATTCTCTCTTCCTCTGCCTCTTCATGATTCTCCTCACCACCACCACCCCTCTCCACGCCGCCCGCCGTCCACCCACCTCCGCCCCACAACCGGAAAACGATTCTCTCAGTCTCCACCCACCCACCACCTCAACATTTTCATTCACGCAGCCGCCGGCCGCCGTGGAAGACCAAATCACTTCCCGAAACTACGGCGTTTCACTCCGCAAAGTCCCCGCCGGTCCCAACCCACTTCATAACTAA
Homology
[Close]
BLAST of CSPI05G05690 vs. TrEMBL
Match: A0A0A0KKA9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G154870 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 1.2e-41
Identity = 88/89 (98.88%), Postives = 88/89 (98.88%), Query Frame = 1 

Query: 1  MASQNSIPPNSLFLCLFMILLTTTTPLHAARRPPTSAPQPENDSLSLHPPTTSTFSFTQP 60
          MASQNSIPPNSLFL LFMILLTTTTPLHAARRPPTSAPQPENDSLSLHPPTTSTFSFTQP
Sbjct: 1  MASQNSIPPNSLFLFLFMILLTTTTPLHAARRPPTSAPQPENDSLSLHPPTTSTFSFTQP 60

Query: 61 PAAVEDQITSRNYGVSLRKVPAGPNPLHN 90
          PAAVEDQITSRNYGVSLRKVPAGPNPLHN
Sbjct: 61 PAAVEDQITSRNYGVSLRKVPAGPNPLHN 89

[Close]
BLAST of CSPI05G05690 vs. NCBI nr
Match: gi|700194948|gb|KGN50125.1| (hypothetical protein Csa_5G154870 [Cucumis sativus])

HSP 1 Score: 176.8 bits (447), Expect = 1.7e-41
Identity = 88/89 (98.88%), Postives = 88/89 (98.88%), Query Frame = 1 

Query: 1  MASQNSIPPNSLFLCLFMILLTTTTPLHAARRPPTSAPQPENDSLSLHPPTTSTFSFTQP 60
          MASQNSIPPNSLFL LFMILLTTTTPLHAARRPPTSAPQPENDSLSLHPPTTSTFSFTQP
Sbjct: 1  MASQNSIPPNSLFLFLFMILLTTTTPLHAARRPPTSAPQPENDSLSLHPPTTSTFSFTQP 60

Query: 61 PAAVEDQITSRNYGVSLRKVPAGPNPLHN 90
          PAAVEDQITSRNYGVSLRKVPAGPNPLHN
Sbjct: 61 PAAVEDQITSRNYGVSLRKVPAGPNPLHN 89

The following BLAST results are available for this feature:
BLAST of CSPI05G05690 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI05G05690 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KKA9_CUCSA1.2e-4198.88Uncharacterized protein OS=Cucumis sativus GN=Csa_5G154870 PE=4 SV=1[more]
BLAST of CSPI05G05690 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI05G05690 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700194948|gb|KGN50125.1|1.7e-4198.88hypothetical protein Csa_5G154870 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G05690.1CSPI05G05690.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI05G05690Cla011472Watermelon (97103) v1cpiwmB416
CSPI05G05690Csa5G154870Cucumber (Chinese Long) v2cpicuB240
CSPI05G05690MELO3C005649Melon (DHL92) v3.5.1cpimeB348
CSPI05G05690ClCG01G002960Watermelon (Charleston Gray)cpiwcgB379
CSPI05G05690Lsi09G002870Bottle gourd (USVL1VR-Ls)cpilsiB322
CSPI05G05690MELO3C005649.2Melon (DHL92) v3.6.1cpimedB338
CSPI05G05690CsaV3_5G003050Cucumber (Chinese Long) v3cpicucB285
CSPI05G05690CmaCh15G012120Cucurbita maxima (Rimu)cmacpiB303
CSPI05G05690CmoCh15G012760Cucurbita moschata (Rifu)cmocpiB295
CSPI05G05690CsGy5G002960Cucumber (Gy14) v2cgybcpiB226
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI05G05690Silver-seed gourdcarcpiB0961
CSPI05G05690Silver-seed gourdcarcpiB0977
CSPI05G05690Cucumber (Chinese Long) v3cpicucB268
CSPI05G05690Watermelon (97103) v2cpiwmbB349
CSPI05G05690Watermelon (97103) v2cpiwmbB404
CSPI05G05690Wax gourdcpiwgoB454
CSPI05G05690Wax gourdcpiwgoB482
CSPI05G05690Wild cucumber (PI 183967)cpicpiB116
CSPI05G05690Cucumber (Gy14) v1cgycpiB457
CSPI05G05690Cucurbita maxima (Rimu)cmacpiB348
CSPI05G05690Cucurbita maxima (Rimu)cmacpiB614
CSPI05G05690Cucurbita moschata (Rifu)cmocpiB340
CSPI05G05690Cucurbita moschata (Rifu)cmocpiB416
CSPI05G05690Cucurbita moschata (Rifu)cmocpiB606
CSPI05G05690Cucumber (Chinese Long) v2cpicuB226
CSPI05G05690Melon (DHL92) v3.5.1cpimeB403
CSPI05G05690Watermelon (Charleston Gray)cpiwcgB414
CSPI05G05690Watermelon (97103) v1cpiwmB412
CSPI05G05690Cucurbita pepo (Zucchini)cpecpiB012
CSPI05G05690Cucurbita pepo (Zucchini)cpecpiB040
CSPI05G05690Cucurbita pepo (Zucchini)cpecpiB176
CSPI05G05690Cucurbita pepo (Zucchini)cpecpiB229
CSPI05G05690Cucurbita pepo (Zucchini)cpecpiB738
CSPI05G05690Bottle gourd (USVL1VR-Ls)cpilsiB379
CSPI05G05690Melon (DHL92) v3.6.1cpimedB399
CSPI05G05690Cucumber (Gy14) v2cgybcpiB130