CsGy5G001010 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy5G001010
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	30S ribosomal protein S9
Location	Chr5 : 582184 .. 583966 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAACTGCAGGTCCTAATCGAGCATTCGGAGATCTTATTGCTGCATCAGGATTCACGGATGATATGATAGACAGTTTGATGGCTTTGAAAGATTTGGAAGGGATTGAGGGGTTGCCCCCTCTAACTGAAATAGAGGATATGCGTTATGAGAAAAACACAAGAAAATCCTCAAGAGCTGAAATTGAACGCCAGAAACAAGAAGAGGTTGCAAAAGCAAGAGTGAGACAGGTCGACAACAAAGGAAGAGCATATGGCACAGGTAGAAGGAAATGCAGCATTGCTCGTGTATGGATTCAGCCCGGAAATGGCAAGTTTGTAGTGAATGACAAAGAATTTGATGTCTATTTTCCAATGCTTGATAGTCGGGCTATTCTTCTTCAACCTTTCGCTGAGACCAAAACATTAGGCCTTTGGGATGTCTCATGTACTGTTAAAGGAGGTGGTACAACGGGTAAGCTTAAGCTCACATTTAACACTTCTCGTTATGTCTTTAGATTTAGATATGTCTGTTTTTAAATTTTGTGTTCATGGTTTTTGTGTTCCGCTTGCTGTAGCCCATTTTCTTTTCACTATCCGGCATTGTGTGGGTTAACACTTCTTATCACCTTGTCTTATTTGTGTACTTATCTCTCTTTTACGAAAAGCTTTCTTAATATTTCTTTCTCCTTGCAACTACTTTGCAACTTATCAGTTTCATTGTATAGTACTTCATTTCATCACACGTGATTAAACCCGGCTATTCAAACATAGAATATGCATAAGTTAGTGATCATGTTAAGATTGAGACAACAATAAATGTTTATGGGACTTCAGTCTGTGCTTAAGTTCGTTGCCATGAAATGAGTGCTTAAACTTCTTTGATTTTTTCTCCTACCATAAAGGTTCAAATAAATTTGAGCTTCATCATAGAATAGAATTCGTGGTCTTAATGATGCCCCACCCTTCTTTTCCAGAGCTGAGTACCTCTGTTCGCGGAAGAAACTTTCTTTTTTACTCCCATTCAATAAGTTCCTCATCTTTCGCCCCGTTTGGGGACATGGGATAATAAAGTTCCGCGTTGTTTGCATCACAGCTCTTTTACATTATATGACTTGGACATAAAAGTAGGTCGTTTATAACTAATTCACAATCTAAGTGCTGCCTCCTTTAACCTATTTCCATTAATACGCACCTTTACTATTGGCGTCTGATCATCTTATCATATGTTAATTAAAACTGACAGATGTAGCATACTTCTTTTATCGCATTATCATAGAAGATCTACTACTGCCAGCACCGCAGTCTAATTGTTGGATGGAAGCATTTATGCTTTTGACTATATTGGGAATGATGCAATAGAGTTTCGACTTTACTGTTTATATGTTTATGCTTCTTCTGAAGTTTTGTCCCGTCTCAAAGTCATTGAAAGTCAACTGTTTTTGCTTCCATCTGTTTCAAATACAAATTTCCTTCTCTCTATCCTCTTCGTATGTGTTTTCAACTCATTGAATGCTCTAAATCTTCAGGTCAAGTTGGAGCTATTCAGCTGGGGATCAGCAGAGCCTTGCAGAATTGGGAACCCGAATTCCGTCCTCCATTGCGAGCAAGTAAGATGAAACGATTACACTTTTTCTTGGTTAGCTATGATGAAACTGATACACCAGCATTTTTTTTTGTATTTTTACTGACCAAATTTTCTGGATTGGTAGGTGGTTTCTTGACTCGAGATGCACGTGTCGTAGAAAGAAAGAAGCCAGGTAAGGCGAAAGCAAGAAAGAGCTTCCAATGGGTGAAGCGTTAG

mRNA sequence

ATGACAACTGCAGGTCCTAATCGAGCATTCGGAGATCTTATTGCTGCATCAGGATTCACGGATGATATGATAGACAGTTTGATGGCTTTGAAAGATTTGGAAGGGATTGAGGGGTTGCCCCCTCTAACTGAAATAGAGGATATGCGTTATGAGAAAAACACAAGAAAATCCTCAAGAGCTGAAATTGAACGCCAGAAACAAGAAGAGGTTGCAAAAGCAAGAGTGAGACAGGTCGACAACAAAGGAAGAGCATATGGCACAGGTCAAGTTGGAGCTATTCAGCTGGGGATCAGCAGAGCCTTGCAGAATTGGGAACCCGAATTCCGTCCTCCATTGCGAGCAAGTGGTTTCTTGACTCGAGATGCACGTGTCGTAGAAAGAAAGAAGCCAGGTAAGGCGAAAGCAAGAAAGAGCTTCCAATGGGTGAAGCGTTAG

Coding sequence (CDS)

ATGACAACTGCAGGTCCTAATCGAGCATTCGGAGATCTTATTGCTGCATCAGGATTCACGGATGATATGATAGACAGTTTGATGGCTTTGAAAGATTTGGAAGGGATTGAGGGGTTGCCCCCTCTAACTGAAATAGAGGATATGCGTTATGAGAAAAACACAAGAAAATCCTCAAGAGCTGAAATTGAACGCCAGAAACAAGAAGAGGTTGCAAAAGCAAGAGTGAGACAGGTCGACAACAAAGGAAGAGCATATGGCACAGGTCAAGTTGGAGCTATTCAGCTGGGGATCAGCAGAGCCTTGCAGAATTGGGAACCCGAATTCCGTCCTCCATTGCGAGCAAGTGGTTTCTTGACTCGAGATGCACGTGTCGTAGAAAGAAAGAAGCCAGGTAAGGCGAAAGCAAGAAAGAGCTTCCAATGGGTGAAGCGTTAG

Protein sequence

MTTAGPNRAFGDLIAASGFTDDMIDSLMALKDLEGIEGLPPLTEIEDMRYEKNTRKSSRAEIERQKQEEVAKARVRQVDNKGRAYGTGQVGAIQLGISRALQNWEPEFRPPLRASGFLTRDARVVERKKPGKAKARKSFQWVKR

Homology

[Close]

BLAST of CsGy5G001010 vs. NCBI nr
Match: XP_004145895.1 (PREDICTED: 28S ribosomal protein S9, mitochondrial [Cucumis sativus] >KGN49932.1 Ribosomal protein S9 [Cucumis sativus])

HSP 1 Score: 243.4 bits (620), Expect = 4.6e-61
Identity = 140/204 (68.63%), Postives = 140/204 (68.63%), Query Frame = 0


Query: 5   GPNRAFGDLIAASGFTDDMIDSLMALKDLEGIEGLPPLTEIEDMRYEKNTRKSSRAEIER 64
           GPNRAFGDLIAASGFTDDMIDSLMALKDLEGIEGLPPLTEIEDMRYEKNTRKSSRAEIER
Sbjct: 202 GPNRAFGDLIAASGFTDDMIDSLMALKDLEGIEGLPPLTEIEDMRYEKNTRKSSRAEIER 261

Query: 65  QKQEEVAKARVRQVDNKGRAYG-------------------------------------- 124
           QKQEEVAKARVRQVDNKGRAYG                                      
Sbjct: 262 QKQEEVAKARVRQVDNKGRAYGTGRRKCSIARVWIQPGNGKFVVNDKEFDVYFPMLDSRA 321

Query: 125 --------------------------TGQVGAIQLGISRALQNWEPEFRPPLRASGFLTR 145
                                     TGQVGAIQLGISRALQNWEPEFRPPLRASGFLTR
Sbjct: 322 ILLQPFAETKTLGLWDVSCTVKGGGTTGQVGAIQLGISRALQNWEPEFRPPLRASGFLTR 381

[Close]

BLAST of CsGy5G001010 vs. NCBI nr
Match: XP_008437516.1 (PREDICTED: 28S ribosomal protein S9, mitochondrial [Cucumis melo])

HSP 1 Score: 231.5 bits (589), Expect = 1.8e-57
Identity = 133/204 (65.20%), Postives = 138/204 (67.65%), Query Frame = 0


Query: 5   GPNRAFGDLIAASGFTDDMIDSLMALKDLEGIEGLPPLTEIEDMRYEKNTRKSSRAEIER 64
           GP+RAFGDLIAASG TDDMIDSLMALKDLEGIEGLPPL+EIEDMRYEKNTRKSSRAEIER
Sbjct: 202 GPDRAFGDLIAASGITDDMIDSLMALKDLEGIEGLPPLSEIEDMRYEKNTRKSSRAEIER 261

Query: 65  QKQEEVAKARVRQVDNKGRAYG-------------------------------------- 124
           QKQEEVAKARVRQVD+KGRAYG                                      
Sbjct: 262 QKQEEVAKARVRQVDDKGRAYGTGRRKCSIARVWIQPGNGKFIVNDKEFDVYFPMLDSRA 321

Query: 125 --------------------------TGQVGAIQLGISRALQNWEPEFRPPLRASGFLTR 145
                                     TGQVGAIQLGISRALQNWEP+FRPPLRA GFLTR
Sbjct: 322 VLLQPFAETKTLGLWDVSCTVKGGGTTGQVGAIQLGISRALQNWEPDFRPPLRACGFLTR 381

[Close]

BLAST of CsGy5G001010 vs. NCBI nr
Match: XP_022922373.1 (28S ribosomal protein S9, mitochondrial [Cucurbita moschata])

HSP 1 Score: 228.8 bits (582), Expect = 1.2e-56
Identity = 129/204 (63.24%), Postives = 138/204 (67.65%), Query Frame = 0


Query: 5   GPNRAFGDLIAASGFTDDMIDSLMALKDLEGIEGLPPLTEIEDMRYEKNTRKSSRAEIER 64
           GPNRAFGDLIAASG TDDM+DSL+ALKDLEG+EGLPPL+ +EDMRYEKNTRKSSRAEIER
Sbjct: 194 GPNRAFGDLIAASGITDDMLDSLIALKDLEGVEGLPPLSVLEDMRYEKNTRKSSRAEIER 253

Query: 65  QKQEEVAKARVRQVDNKGRAYG-------------------------------------- 124
           QKQEEVAKARVRQ+D+KGRAYG                                      
Sbjct: 254 QKQEEVAKARVRQIDDKGRAYGTGRRKCSIARVWVQPGDGKFVVNDKEFDVYFPMLDSRA 313

Query: 125 --------------------------TGQVGAIQLGISRALQNWEPEFRPPLRASGFLTR 145
                                     TGQVGAIQLGISRALQNWEP+FRPPLRASGFLTR
Sbjct: 314 ALLRPFSETKTLGLWDVKCTVKGGGTTGQVGAIQLGISRALQNWEPDFRPPLRASGFLTR 373

[Close]

BLAST of CsGy5G001010 vs. NCBI nr
Match: XP_022972996.1 (28S ribosomal protein S9, mitochondrial [Cucurbita maxima])

HSP 1 Score: 228.8 bits (582), Expect = 1.2e-56
Identity = 129/204 (63.24%), Postives = 138/204 (67.65%), Query Frame = 0


Query: 5   GPNRAFGDLIAASGFTDDMIDSLMALKDLEGIEGLPPLTEIEDMRYEKNTRKSSRAEIER 64
           GPNRAFGDLIAASG TDDM+DSL+ALKDLEG+EGLPPL+ +EDMRYEKNTRKSSRAEIER
Sbjct: 194 GPNRAFGDLIAASGITDDMLDSLIALKDLEGVEGLPPLSVLEDMRYEKNTRKSSRAEIER 253

Query: 65  QKQEEVAKARVRQVDNKGRAYG-------------------------------------- 124
           QKQEEVAKARVRQ+D+KGRAYG                                      
Sbjct: 254 QKQEEVAKARVRQIDDKGRAYGTGRRKCSIARVWVQPGDGKFVVNDKEFDVYFPMLDSRA 313

Query: 125 --------------------------TGQVGAIQLGISRALQNWEPEFRPPLRASGFLTR 145
                                     TGQVGAIQLGISRALQNWEP+FRPPLRASGFLTR
Sbjct: 314 ALLRPFSETKTLGLWDVKCTVKGGGTTGQVGAIQLGISRALQNWEPDFRPPLRASGFLTR 373

[Close]

BLAST of CsGy5G001010 vs. NCBI nr
Match: XP_023550446.1 (28S ribosomal protein S9, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 228.8 bits (582), Expect = 1.2e-56
Identity = 129/204 (63.24%), Postives = 138/204 (67.65%), Query Frame = 0


Query: 5   GPNRAFGDLIAASGFTDDMIDSLMALKDLEGIEGLPPLTEIEDMRYEKNTRKSSRAEIER 64
           GPNRAFGDLIAASG TDDM+DSL+ALKDLEG+EGLPPL+ +EDMRYEKNTRKSSRAEIER
Sbjct: 194 GPNRAFGDLIAASGITDDMLDSLIALKDLEGVEGLPPLSVLEDMRYEKNTRKSSRAEIER 253

Query: 65  QKQEEVAKARVRQVDNKGRAYG-------------------------------------- 124
           QKQEEVAKARVRQ+D+KGRAYG                                      
Sbjct: 254 QKQEEVAKARVRQIDDKGRAYGTGRRKCSIARVWVQPGDGKFVVNDKEFDVYFPMLDSRA 313

Query: 125 --------------------------TGQVGAIQLGISRALQNWEPEFRPPLRASGFLTR 145
                                     TGQVGAIQLGISRALQNWEP+FRPPLRASGFLTR
Sbjct: 314 ALLRPFSETKTLGLWDVKCTVKGGGTTGQVGAIQLGISRALQNWEPDFRPPLRASGFLTR 373

[Close]

BLAST of CsGy5G001010 vs. TAIR10
Match: AT3G49080.1 (Ribosomal protein S5 domain 2-like superfamily protein)

HSP 1 Score: 196.1 bits (497), Expect = 1.5e-50
Identity = 113/204 (55.39%), Postives = 129/204 (63.24%), Query Frame = 0


Query: 5   GPNRAFGDLIAASGFTDDMIDSLMALKDLEGIEGLPPLTEIEDMRYEKNTRKSSRAEIER 64
           GP+RAFGDLIA SG TD+M+DSL+ALKD +G+EGLPPLTEIE++R EK+++KSSRAEIE 
Sbjct: 227 GPDRAFGDLIAKSGITDEMLDSLIALKDFQGVEGLPPLTEIENLRREKSSKKSSRAEIEL 286

Query: 65  QKQEEVAKARVRQVDNKGRAYG-------------------------------------- 124
           Q QE++AKARVRQVD  GRAYG                                      
Sbjct: 287 QMQEDIAKARVRQVDETGRAYGTGRRKCSIARVWIQPGEGKFQVNEKEFDVYFPMLDHRA 346

Query: 125 --------------------------TGQVGAIQLGISRALQNWEPEFRPPLRASGFLTR 145
                                     TGQVGAIQLGISRALQNWEP+ R  LRA+GFLTR
Sbjct: 347 ALLRPLAETKTLGRWDIKCTVKGGGTTGQVGAIQLGISRALQNWEPDMRTSLRAAGFLTR 406

[Close]

BLAST of CsGy5G001010 vs. TAIR10
Match: AT1G74970.1 (ribosomal protein S9)

HSP 1 Score: 61.2 bits (147), Expect = 5.9e-10
Identity = 33/58 (56.90%), Postives = 40/58 (68.97%), Query Frame = 0


Query: 87  TGQVGAIQLGISRALQNWEPEFRPPLRASGFLTRDARVVERKKPGKAKARKSFQWVKR 145
           +GQ  AI LG++RAL     + R PL+  G LTRDARVVERKK G  KARK+ Q+ KR
Sbjct: 151 SGQAQAITLGVARALLKVSADHRSPLKKEGLLTRDARVVERKKAGLKKARKAPQFSKR 208

[Close]

BLAST of CsGy5G001010 vs. Swiss-Prot
Match: sp|Q8L6Z4|RPS9M_ARATH (30S ribosomal protein S9, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS9M PE=1 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 2.8e-49
Identity = 113/204 (55.39%), Postives = 129/204 (63.24%), Query Frame = 0


Query: 5   GPNRAFGDLIAASGFTDDMIDSLMALKDLEGIEGLPPLTEIEDMRYEKNTRKSSRAEIER 64
           GP+RAFGDLIA SG TD+M+DSL+ALKD +G+EGLPPLTEIE++R EK+++KSSRAEIE 
Sbjct: 227 GPDRAFGDLIAKSGITDEMLDSLIALKDFQGVEGLPPLTEIENLRREKSSKKSSRAEIEL 286

Query: 65  QKQEEVAKARVRQVDNKGRAYG-------------------------------------- 124
           Q QE++AKARVRQVD  GRAYG                                      
Sbjct: 287 QMQEDIAKARVRQVDETGRAYGTGRRKCSIARVWIQPGEGKFQVNEKEFDVYFPMLDHRA 346

Query: 125 --------------------------TGQVGAIQLGISRALQNWEPEFRPPLRASGFLTR 145
                                     TGQVGAIQLGISRALQNWEP+ R  LRA+GFLTR
Sbjct: 347 ALLRPLAETKTLGRWDIKCTVKGGGTTGQVGAIQLGISRALQNWEPDMRTSLRAAGFLTR 406

[Close]

BLAST of CsGy5G001010 vs. Swiss-Prot
Match: sp|A4WUK1|RS9_RHOS5 (30S ribosomal protein S9 OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) OX=349102 GN=rpsI PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 6.4e-14
Identity = 39/58 (67.24%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 87  TGQVGAIQLGISRALQNWEPEFRPPLRASGFLTRDARVVERKKPGKAKARKSFQWVKR 145
           +GQ GA++ GIS+ALQ +EP  R  L+A+GFLTRD+RVVERKK GKAKAR+SFQ+ KR
Sbjct: 103 SGQAGAVKHGISKALQLYEPSLRAALKAAGFLTRDSRVVERKKYGKAKARRSFQFSKR 160

[Close]

BLAST of CsGy5G001010 vs. Swiss-Prot
Match: sp|A8I7Z9|RS9_AZOC5 (30S ribosomal protein S9 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 / NBRC 14845 / NCIMB 13405 / ORS 571) OX=438753 GN=rpsI PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 8.4e-14
Identity = 39/58 (67.24%), Postives = 48/58 (82.76%), Query Frame = 0


Query: 87  TGQVGAIQLGISRALQNWEPEFRPPLRASGFLTRDARVVERKKPGKAKARKSFQWVKR 145
           +GQ GA++ GISRAL  +EPE R PL+  GFLTRD+RVVERKK G+AKAR+SFQ+ KR
Sbjct: 97  SGQAGALRHGISRALTFYEPELRGPLKKGGFLTRDSRVVERKKYGRAKARRSFQFSKR 154

[Close]

BLAST of CsGy5G001010 vs. Swiss-Prot
Match: sp|Q6N650|RS9_RHOPA (30S ribosomal protein S9 OS=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) OX=258594 GN=rpsI PE=1 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 8.4e-14
Identity = 47/82 (57.32%), Postives = 57/82 (69.51%), Query Frame = 0


Query: 66  KQEEVAKARVRQVDNKGRAYG---TGQVGAIQLGISRALQNWEPEFRPPLRASGFLTRDA 125
           +Q  VA AR  Q D      G   +GQ GA++ GIS+AL N+EPE R  L+  GFLTRD+
Sbjct: 79  QQPLVAAARAGQYDVICTVAGGGLSGQAGAVRHGISKALTNFEPELRSVLKKGGFLTRDS 138

Query: 126 RVVERKKPGKAKARKSFQWVKR 145
           RVVERKK GKAKAR+SFQ+ KR
Sbjct: 139 RVVERKKYGKAKARRSFQFSKR 160

[Close]

BLAST of CsGy5G001010 vs. Swiss-Prot
Match: sp|B3QKG4|RS9_RHOPT (30S ribosomal protein S9 OS=Rhodopseudomonas palustris (strain TIE-1) OX=395960 GN=rpsI PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 8.4e-14
Identity = 47/82 (57.32%), Postives = 57/82 (69.51%), Query Frame = 0


Query: 66  KQEEVAKARVRQVDNKGRAYG---TGQVGAIQLGISRALQNWEPEFRPPLRASGFLTRDA 125
           +Q  VA AR  Q D      G   +GQ GA++ GIS+AL N+EPE R  L+  GFLTRD+
Sbjct: 79  QQPLVAAARAGQYDVICTVAGGGLSGQAGAVRHGISKALTNFEPELRSVLKKGGFLTRDS 138

Query: 126 RVVERKKPGKAKARKSFQWVKR 145
           RVVERKK GKAKAR+SFQ+ KR
Sbjct: 139 RVVERKKYGKAKARRSFQFSKR 160

[Close]

BLAST of CsGy5G001010 vs. TrEMBL
Match: tr|A0A0A0KNH1|A0A0A0KNH1_CUCSA (Ribosomal protein S9 OS=Cucumis sativus OX=3659 GN=Csa_5G141060 PE=3 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 3.1e-61
Identity = 140/204 (68.63%), Postives = 140/204 (68.63%), Query Frame = 0


Query: 5   GPNRAFGDLIAASGFTDDMIDSLMALKDLEGIEGLPPLTEIEDMRYEKNTRKSSRAEIER 64
           GPNRAFGDLIAASGFTDDMIDSLMALKDLEGIEGLPPLTEIEDMRYEKNTRKSSRAEIER
Sbjct: 202 GPNRAFGDLIAASGFTDDMIDSLMALKDLEGIEGLPPLTEIEDMRYEKNTRKSSRAEIER 261

Query: 65  QKQEEVAKARVRQVDNKGRAYG-------------------------------------- 124
           QKQEEVAKARVRQVDNKGRAYG                                      
Sbjct: 262 QKQEEVAKARVRQVDNKGRAYGTGRRKCSIARVWIQPGNGKFVVNDKEFDVYFPMLDSRA 321

Query: 125 --------------------------TGQVGAIQLGISRALQNWEPEFRPPLRASGFLTR 145
                                     TGQVGAIQLGISRALQNWEPEFRPPLRASGFLTR
Sbjct: 322 ILLQPFAETKTLGLWDVSCTVKGGGTTGQVGAIQLGISRALQNWEPEFRPPLRASGFLTR 381

[Close]

BLAST of CsGy5G001010 vs. TrEMBL
Match: tr|A0A1S3ATW2|A0A1S3ATW2_CUCME (28S ribosomal protein S9, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103482908 PE=3 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 1.2e-57
Identity = 133/204 (65.20%), Postives = 138/204 (67.65%), Query Frame = 0


Query: 5   GPNRAFGDLIAASGFTDDMIDSLMALKDLEGIEGLPPLTEIEDMRYEKNTRKSSRAEIER 64
           GP+RAFGDLIAASG TDDMIDSLMALKDLEGIEGLPPL+EIEDMRYEKNTRKSSRAEIER
Sbjct: 202 GPDRAFGDLIAASGITDDMIDSLMALKDLEGIEGLPPLSEIEDMRYEKNTRKSSRAEIER 261

Query: 65  QKQEEVAKARVRQVDNKGRAYG-------------------------------------- 124
           QKQEEVAKARVRQVD+KGRAYG                                      
Sbjct: 262 QKQEEVAKARVRQVDDKGRAYGTGRRKCSIARVWIQPGNGKFIVNDKEFDVYFPMLDSRA 321

Query: 125 --------------------------TGQVGAIQLGISRALQNWEPEFRPPLRASGFLTR 145
                                     TGQVGAIQLGISRALQNWEP+FRPPLRA GFLTR
Sbjct: 322 VLLQPFAETKTLGLWDVSCTVKGGGTTGQVGAIQLGISRALQNWEPDFRPPLRACGFLTR 381

[Close]

BLAST of CsGy5G001010 vs. TrEMBL
Match: tr|A0A2C9UJ52|A0A2C9UJ52_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G023800 PE=3 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.1e-53
Identity = 124/204 (60.78%), Postives = 134/204 (65.69%), Query Frame = 0


Query: 5   GPNRAFGDLIAASGFTDDMIDSLMALKDLEGIEGLPPLTEIEDMRYEKNTRKSSRAEIER 64
           GPNRAFGDLIAASG TD M+DSL+ALKD EG+EGLPPL+EIEDMRYEKNTRKS+RAEIER
Sbjct: 195 GPNRAFGDLIAASGITDAMLDSLIALKDFEGVEGLPPLSEIEDMRYEKNTRKSTRAEIER 254

Query: 65  QKQEEVAKARVRQVDNKGRAYGT------------------------------------- 124
           +KQEEVAKARVRQVD+KGRAYGT                                     
Sbjct: 255 RKQEEVAKARVRQVDDKGRAYGTGRRKCSVARVWIQPGDGKFLVNDKQFDVYFPMLDHRA 314

Query: 125 ---------------------------GQVGAIQLGISRALQNWEPEFRPPLRASGFLTR 145
                                      GQVGAIQLGI RALQNWEP+ RPPLR++GFLTR
Sbjct: 315 ALLRPLNETKTLGLWDVNCTVQGGGVSGQVGAIQLGIGRALQNWEPDLRPPLRSAGFLTR 374

[Close]

BLAST of CsGy5G001010 vs. TrEMBL
Match: tr|K4D2Q7|K4D2Q7_SOLLC (Uncharacterized protein OS=Solanum lycopersicum OX=4081 GN=101256335 PE=3 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 1.4e-53
Identity = 123/204 (60.29%), Postives = 135/204 (66.18%), Query Frame = 0


Query: 5   GPNRAFGDLIAASGFTDDMIDSLMALKDLEGIEGLPPLTEIEDMRYEKNTRKSSRAEIER 64
           GPNRAFGDLIAASG TD+M+DSL+ALKDL+GI+GLPPL+EIEDMRYEKNTRKSSRA+IER
Sbjct: 182 GPNRAFGDLIAASGITDEMMDSLLALKDLDGIKGLPPLSEIEDMRYEKNTRKSSRADIER 241

Query: 65  QKQEEVAKARVRQVDNKGRAYGT------------------------------------- 124
           QKQEEVAKARV+QVD KGRAYGT                                     
Sbjct: 242 QKQEEVAKARVKQVDEKGRAYGTGRRKCSIARVWVEPGGGKFMVNDKEFDVYFPMLDHRA 301

Query: 125 ---------------------------GQVGAIQLGISRALQNWEPEFRPPLRASGFLTR 145
                                      GQVGAIQLGISRALQNW+PE RPPLR  G+LTR
Sbjct: 302 VLLRPFTETKTLGMWNVRCTVKGGGVSGQVGAIQLGISRALQNWDPELRPPLREGGYLTR 361

[Close]

BLAST of CsGy5G001010 vs. TrEMBL
Match: tr|A0A2R6RSU4|A0A2R6RSU4_ACTCH (30S ribosomal protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc03433 PE=3 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 5.2e-53
Identity = 121/204 (59.31%), Postives = 134/204 (65.69%), Query Frame = 0


Query: 5   GPNRAFGDLIAASGFTDDMIDSLMALKDLEGIEGLPPLTEIEDMRYEKNTRKSSRAEIER 64
           GPNRAFGDL+AASG T+ M+DSL+ALKD+E ++GLPPL EIEDMRYEKNTRKSSRAEIER
Sbjct: 199 GPNRAFGDLVAASGITEAMLDSLIALKDMESVQGLPPLREIEDMRYEKNTRKSSRAEIER 258

Query: 65  QKQEEVAKARVRQVDNKGRAYGT------------------------------------- 124
           QKQEEVAK+RVR+VD KGRAYGT                                     
Sbjct: 259 QKQEEVAKSRVREVDEKGRAYGTGRRKCSIARVWIQPGDGKFLVNDKEFDVYFRMLDHRA 318

Query: 125 ---------------------------GQVGAIQLGISRALQNWEPEFRPPLRASGFLTR 145
                                      GQVGA+QLGISRALQNWEP+ RPPL+A+GFLTR
Sbjct: 319 ALLRPFSETKTLGLWDISCTVKGGGLSGQVGAVQLGISRALQNWEPDLRPPLKAAGFLTR 378

The following BLAST results are available for this feature:

BLAST of CsGy5G001010 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145895.1	4.6e-61	68.63	PREDICTED: 28S ribosomal protein S9, mitochondrial [Cucumis sativus] >KGN49932.1...	[more]
XP_008437516.1	1.8e-57	65.20	PREDICTED: 28S ribosomal protein S9, mitochondrial [Cucumis melo]	[more]
XP_022922373.1	1.2e-56	63.24	28S ribosomal protein S9, mitochondrial [Cucurbita moschata]	[more]
XP_022972996.1	1.2e-56	63.24	28S ribosomal protein S9, mitochondrial [Cucurbita maxima]	[more]
XP_023550446.1	1.2e-56	63.24	28S ribosomal protein S9, mitochondrial [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsGy5G001010 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G49080.1	1.5e-50	55.39	Ribosomal protein S5 domain 2-like superfamily protein	[more]
AT1G74970.1	5.9e-10	56.90	ribosomal protein S9	[more]

BLAST of CsGy5G001010 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8L6Z4\|RPS9M_ARATH	2.8e-49	55.39	30S ribosomal protein S9, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS9M...	[more]
sp\|A4WUK1\|RS9_RHOS5	6.4e-14	67.24	30S ribosomal protein S9 OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4...	[more]
sp\|A8I7Z9\|RS9_AZOC5	8.4e-14	67.24	30S ribosomal protein S9 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 59...	[more]
sp\|Q6N650\|RS9_RHOPA	8.4e-14	57.32	30S ribosomal protein S9 OS=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA...	[more]
sp\|B3QKG4\|RS9_RHOPT	8.4e-14	57.32	30S ribosomal protein S9 OS=Rhodopseudomonas palustris (strain TIE-1) OX=395960 ...	[more]

BLAST of CsGy5G001010 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KNH1\|A0A0A0KNH1_CUCSA	3.1e-61	68.63	Ribosomal protein S9 OS=Cucumis sativus OX=3659 GN=Csa_5G141060 PE=3 SV=1	[more]
tr\|A0A1S3ATW2\|A0A1S3ATW2_CUCME	1.2e-57	65.20	28S ribosomal protein S9, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103482908 ...	[more]
tr\|A0A2C9UJ52\|A0A2C9UJ52_MANES	1.1e-53	60.78	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G023800 PE=3 SV=...	[more]
tr\|K4D2Q7\|K4D2Q7_SOLLC	1.4e-53	60.29	Uncharacterized protein OS=Solanum lycopersicum OX=4081 GN=101256335 PE=3 SV=1	[more]
tr\|A0A2R6RSU4\|A0A2R6RSU4_ACTCH	5.2e-53	59.31	30S ribosomal protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR020568	Ribosomal_S5_D2-typ_fold
IPR014721	Ribosomal_S5_D2-typ_fold_subgr
IPR000754	Ribosomal_S9

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005763	mitochondrial small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G001010.1	CsGy5G001010.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000754	Ribosomal protein S9	PFAM	PF00380	Ribosomal_S9	coord: 87..144 e-value: 8.5E-22 score: 77.9
IPR000754	Ribosomal protein S9	PANTHER	PTHR21569	RIBOSOMAL PROTEIN S9	coord: 87..144
IPR000754	Ribosomal protein S9	PANTHER	PTHR21569	RIBOSOMAL PROTEIN S9	coord: 5..89
IPR014721	Ribosomal protein S5 domain 2-type fold, subgroup	GENE3D	G3DSA:3.30.230.10		coord: 45..144 e-value: 1.8E-22 score: 81.9
None	No IPR available	PANTHER	PTHR21569:SF1	28S RIBOSOMAL PROTEIN S9, MITOCHONDRIAL	coord: 87..144
None	No IPR available	PANTHER	PTHR21569:SF1	28S RIBOSOMAL PROTEIN S9, MITOCHONDRIAL	coord: 5..89
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	SSF54211	Ribosomal protein S5 domain 2-like	coord: 87..144

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy5G001010	Cla004950	Watermelon (97103) v1	cgybwmB381
CsGy5G001010	Csa5G141060	Cucumber (Chinese Long) v2	cgybcuB224
CsGy5G001010	MELO3C005830	Melon (DHL92) v3.5.1	cgybmeB298
CsGy5G001010	ClCG01G001020	Watermelon (Charleston Gray)	cgybwcgB332
CsGy5G001010	CSPI05G03800	Wild cucumber (PI 183967)	cgybcpiB226
CsGy5G001010	CmaCh15G010830	Cucurbita maxima (Rimu)	cgybcmaB602
CsGy5G001010	CmoCh15G011430	Cucurbita moschata (Rifu)	cgybcmoB575
CsGy5G001010	Lsi09G000880	Bottle gourd (USVL1VR-Ls)	cgyblsiB294
CsGy5G001010	Cp4.1LG13g02560	Cucurbita pepo (Zucchini)	cgybcpeB610
CsGy5G001010	MELO3C005830.2	Melon (DHL92) v3.6.1	cgybmedB298
CsGy5G001010	CsaV3_5G001160	Cucumber (Chinese Long) v3	cgybcucB232
CsGy5G001010	Cla97C01G001080	Watermelon (97103) v2	cgybwmbB319
CsGy5G001010	Bhi12G000014	Wax gourd	cgybwgoB413
CsGy5G001010	Carg23172	Silver-seed gourd	carcgybB0548

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy5G001010	Cucumber (Gy14) v2	cgybcgybB128
CsGy5G001010	Cucurbita maxima (Rimu)	cgybcmaB639
CsGy5G001010	Cucurbita moschata (Rifu)	cgybcmoB618
CsGy5G001010	Cucurbita pepo (Zucchini)	cgybcpeB686
CsGy5G001010	Melon (DHL92) v3.6.1	cgybmedB358
CsGy5G001010	Silver-seed gourd	carcgybB0710
CsGy5G001010	Cucumber (Chinese Long) v3	cgybcucB230