Cla004950 (gene) Watermelon (97103) v1

Overview
NameCla004950
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
Description30S ribosomal protein S9-like (AHRD V1 ***- Q9SMU5_ARATH); contains Interpro domain(s) IPR000209 Peptidase S8 and S53, subtilisin, kexin, sedolisin
LocationChr1 : 758430 .. 760228 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAACTGCAGGTCCTAATCGAGTATTCGGAGATCTTATTGCTGCATCAGGAATCACGGATGACATGATAGACAGTTTGATTGCTTTGAAAGATTTGGAAGGGGTTGAGGGGTTGCCCCCCCTAAGTGAAATAGAGGATATGCGTTATGAGAAAAACACAAGAAAATCCTCAAGAGCTGAAATTGAGCGCCAGAAACAAGAAGAGGTTGCAAAAGCAAGAGTGAGACAGGTTGATGACAAAGGAAGAGCATATGGCACAGGAAGAAGGAAATGCAGCATTGCTCGTGTATGGATTCAGCCAGGAGATGGGAAGTTCGTAGTGAATGATAAAGAATTTGATGTCTATTTTCCAATGCTCGATAGTCGGGCTGCTCTTCTTCGACCTTTCTCTGAGACCAAAACATTAGGCCTTTGGGACGTCAAATGTACTGTTAAAGGAGGTGGTACAACGGGTAAGCTTAAGTTCTAAATAACATTTAACACTTCTTGTTACATCTTCATATCAGTTATGTCTGTTCTTAAATTGTGTTTTTATGGTTTTTTTTTCTGCTTGCTGTAGTCCTTTTTCTTGTCACTATTTTGCATTTGTGATTATTTCTTGTCACTAGTTCTTTGGCATTGAGTGGGTTAACACCTCTTATTGCCTTTCTAATTCTGTGTACTTATCTCTCTTTAATGAAAAGCTCTCTTGAATTTTTTTTTTCTGCAATTACTTTACAACTTATCAGTCGTTGTATAGTGTTTCATTTCATCGCACGTAATGAACAAAAACAAATCTTTATTAGACTTCAGTCTCTGCTTAAGTTCGTTTCCATGGAATGGTGTACAATGCAAATCTTCTTTGATTTATGTTCTACAACCATAAAAGTTCAAATACTCTTGAGCTTCATCATGGAACTGCTTAATTTCGAACTTGGGACTATCCTGGTCTTATGATACCCCTTCCCCTCTCTCCCAGACCTGAGTAGCCCTGTTCACAAAAGAAACCCTCTTTTTCACTCCCATTCAATAAGTTCCCTGTTGTTCACATCACAACTCTCAAGCAGGTCTTTTATAACTAATTCACTATCTAACCACTGCCTCCTTTAACCAGTTTTCATTAATACACACCTTTAATATTGGCATCTGATCATTTTATCGATTTACTTTACATGATATGACAATTAAATCTGGGTTTGTCTTTTGAATTATGGATGTCGATAACAGATGATGCAGTATCGTAATAACTTCTTTTATCATCATCGTCGTTATATAAGATCTATTACTGCCAGCTCCTCAGTCTAATGGGTGGATGTAAACTTTTATGCTTTTGACTTTATTAGAAAGGATGCATTAAAGTTTCGACTCATTGCTTATATGTTTGTGCTTCTTCTGGAGTTTTATCCTGTTTCTAAGTCATTGAAAGTCAACTATTTTTGTTTCAATCTGTTCCAAATACAAATTTCCTTCTCTCTACCCTTTTTGTATTTGTTTTCAAGTGAGTGAAAGTTCTGAACCTTCTGGGTTACAGGCCAAGTTGGAGCTATTCAGTTGGGTATCAGCAGAGCCTTGCAGAATTGGGAGCCCGATCTCCGTCCTCCATTGCGAGCATGTAAGATAAAACAATTACACTTTCTTGGTCAGCTATGATTAGAATGATACATAAGAAGCATTTATTTGTTCTTTTTTTTATTGATCAAATTTTCCTTTTCTATTCGGATGGTAGCTGGTTTCTTGACTCGAGATGCACGTGTTGTTGAAAGAAAGAAGCCAGGAAAGGCGAAAGCAAGAAAGAGCTTCCAATGGGTGAAACGTTAG

mRNA sequence

ATGTCAACTGCAGGTCCTAATCGAGTATTCGGAGATCTTATTGCTGCATCAGGAATCACGGATGACATGATAGACAGTTTGATTGCTTTGAAAGATTTGGAAGGGGTTGAGGGGTTGCCCCCCCTAAGTGAAATAGAGGATATGCGTTATGAGAAAAACACAAGAAAATCCTCAAGAGCTGAAATTGAGCGCCAGAAACAAGAAGAGGTTGCAAAAGCAAGAGTGAGACAGGTTGATGACAAAGGAAGAGCATATGGCACAGGAAGAAGGAAATGCAGCATTGCTCGTGTATGGATTCAGCCAGGAGATGGGAAGTTCGTAGTGAATGATAAAGAATTTGATGTCTATTTTCCAATGCTCGATAGTCGGGCTGCTCTTCTTCGACCTTTCTCTGAGACCAAAACATTAGGCCTTTGGGACGTCAAATGTACTGTTAAAGGAGGTGGTACAACGGGCCAAGTTGGAGCTATTCAGTTGGGTATCAGCAGAGCCTTGCAGAATTGGGAGCCCGATCTCCGTCCTCCATTGCGAGCATCTGGTTTCTTGACTCGAGATGCACGTGTTGTTGAAAGAAAGAAGCCAGGAAAGGCGAAAGCAAGAAAGAGCTTCCAATGGGTGAAACGTTAG

Coding sequence (CDS)

ATGTCAACTGCAGGTCCTAATCGAGTATTCGGAGATCTTATTGCTGCATCAGGAATCACGGATGACATGATAGACAGTTTGATTGCTTTGAAAGATTTGGAAGGGGTTGAGGGGTTGCCCCCCCTAAGTGAAATAGAGGATATGCGTTATGAGAAAAACACAAGAAAATCCTCAAGAGCTGAAATTGAGCGCCAGAAACAAGAAGAGGTTGCAAAAGCAAGAGTGAGACAGGTTGATGACAAAGGAAGAGCATATGGCACAGGAAGAAGGAAATGCAGCATTGCTCGTGTATGGATTCAGCCAGGAGATGGGAAGTTCGTAGTGAATGATAAAGAATTTGATGTCTATTTTCCAATGCTCGATAGTCGGGCTGCTCTTCTTCGACCTTTCTCTGAGACCAAAACATTAGGCCTTTGGGACGTCAAATGTACTGTTAAAGGAGGTGGTACAACGGGCCAAGTTGGAGCTATTCAGTTGGGTATCAGCAGAGCCTTGCAGAATTGGGAGCCCGATCTCCGTCCTCCATTGCGAGCATCTGGTTTCTTGACTCGAGATGCACGTGTTGTTGAAAGAAAGAAGCCAGGAAAGGCGAAAGCAAGAAAGAGCTTCCAATGGGTGAAACGTTAG

Protein sequence

MSTAGPNRVFGDLIAASGITDDMIDSLIALKDLEGVEGLPPLSEIEDMRYEKNTRKSSRAEIERQKQEEVAKARVRQVDDKGRAYGTGRRKCSIARVWIQPGDGKFVVNDKEFDVYFPMLDSRAALLRPFSETKTLGLWDVKCTVKGGGTTGQVGAIQLGISRALQNWEPDLRPPLRASGFLTRDARVVERKKPGKAKARKSFQWVKR
Homology
[Close]
BLAST of Cla004950 vs. Swiss-Prot
Match: RS9_BART1 (30S ribosomal protein S9 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=rpsI PE=3 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 3.5e-37
Identity = 78/144 (54.17%), Postives = 100/144 (69.44%), Query Frame = 1 

Query: 65  QKQEEVAKARVRQVDDKGRAYGTGRRKCSIARVWIQPGDGKFVVNDKEFDVYFPMLDSRA 124
           +  E V    V+++D +GRAY TG+RK ++ARVWI+PG GK ++N+KEFD YF     R 
Sbjct: 18  EPHENVVPVHVQKLDSQGRAYATGKRKDAVARVWIKPGSGKIIINNKEFDKYFARPVLRM 77

Query: 125 ALLRPFSETKTLGLWDVKCTVKGGGTTGQVGAIQLGISRALQNWEPDLRPPLRASGFLTR 184
            L +P   T     +D+  TV GGG +GQ GAI+ GIS+AL  +EP+LRP L+  GFLTR
Sbjct: 78  ILRQPIVATNRDTQFDIVATVAGGGLSGQAGAIRHGISKALTYYEPELRPILKKGGFLTR 137

Query: 185 DARVVERKKPGKAKARKSFQWVKR 209
           D+RVVERKK GKAKAR+SFQ+ KR
Sbjct: 138 DSRVVERKKYGKAKARRSFQFSKR 161

[Close]
BLAST of Cla004950 vs. Swiss-Prot
Match: RS9_AZOC5 (30S ribosomal protein S9 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 / NBRC 14845 / NCIMB 13405 / ORS 571) GN=rpsI PE=3 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 4.5e-37
Identity = 76/138 (55.07%), Postives = 99/138 (71.74%), Query Frame = 1 

Query: 71  AKARVRQVDDKGRAYGTGRRKCSIARVWIQPGDGKFVVNDKEFDVYFPMLDSRAALLRPF 130
           A   V+++D  GRAY TG+RK ++ARVW++PG GK +VND+  +VYF     R  + +PF
Sbjct: 17  APVHVQKLDKFGRAYATGKRKDAVARVWVRPGTGKIIVNDRPVEVYFARPVLRLIINQPF 76

Query: 131 SETKTLGLWDVKCTVKGGGTTGQVGAIQLGISRALQNWEPDLRPPLRASGFLTRDARVVE 190
           +     G +DV CTV GGG +GQ GA++ GISRAL  +EP+LR PL+  GFLTRD+RVVE
Sbjct: 77  AAAAREGAYDVVCTVSGGGLSGQAGALRHGISRALTFYEPELRGPLKKGGFLTRDSRVVE 136

Query: 191 RKKPGKAKARKSFQWVKR 209
           RKK G+AKAR+SFQ+ KR
Sbjct: 137 RKKYGRAKARRSFQFSKR 154

[Close]
BLAST of Cla004950 vs. Swiss-Prot
Match: RS9_XANP2 (30S ribosomal protein S9 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rpsI PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.3e-36
Identity = 73/138 (52.90%), Postives = 98/138 (71.01%), Query Frame = 1 

Query: 71  AKARVRQVDDKGRAYGTGRRKCSIARVWIQPGDGKFVVNDKEFDVYFPMLDSRAALLRPF 130
           A   V+++D  GRAY TG+RK ++ARVW++PG GK  +ND++ +VYF     R  + +PF
Sbjct: 23  APVHVQKLDKYGRAYATGKRKNAVARVWVRPGTGKVTINDRDIEVYFARPVLRLMINQPF 82

Query: 131 SETKTLGLWDVKCTVKGGGTTGQVGAIQLGISRALQNWEPDLRPPLRASGFLTRDARVVE 190
                 G +DV CTV GGG +GQ GA++ GIS+AL  +EP+LR PL+  GF+TRD+RVVE
Sbjct: 83  QAAAREGQYDVVCTVSGGGLSGQAGAVRHGISKALTYYEPELRSPLKKGGFITRDSRVVE 142

Query: 191 RKKPGKAKARKSFQWVKR 209
           RKK G+AKAR+SFQ+ KR
Sbjct: 143 RKKYGRAKARRSFQFSKR 160

[Close]
BLAST of Cla004950 vs. Swiss-Prot
Match: RS9_BRUA2 (30S ribosomal protein S9 OS=Brucella abortus (strain 2308) GN=rpsI PE=3 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 2.9e-36
Identity = 76/143 (53.15%), Postives = 99/143 (69.23%), Query Frame = 1 

Query: 66  KQEEVAKARVRQVDDKGRAYGTGRRKCSIARVWIQPGDGKFVVNDKEFDVYFPMLDSRAA 125
           K E  A   V+++D +GRAY TG+RK ++ARVW++PG GK  VNDKEF+ YF     +  
Sbjct: 16  KTEAAAPVHVQKLDAQGRAYATGKRKDAVARVWVKPGTGKITVNDKEFEKYFARPVLQMI 75

Query: 126 LLRPFSETKTLGLWDVKCTVKGGGTTGQVGAIQLGISRALQNWEPDLRPPLRASGFLTRD 185
           L +P   +   G +D+  TV GGG +GQ GA++ GIS+AL ++EP LR  L+  GFLTRD
Sbjct: 76  LQQPIVASNRAGQFDIVATVAGGGLSGQAGAVRHGISKALTDYEPGLRTVLKKGGFLTRD 135

Query: 186 ARVVERKKPGKAKARKSFQWVKR 209
           +RVVERKK GKAKAR+SFQ+ KR
Sbjct: 136 SRVVERKKYGKAKARRSFQFSKR 158

[Close]
BLAST of Cla004950 vs. Swiss-Prot
Match: RS9_BRUA1 (30S ribosomal protein S9 OS=Brucella abortus (strain S19) GN=rpsI PE=3 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 2.9e-36
Identity = 76/143 (53.15%), Postives = 99/143 (69.23%), Query Frame = 1 

Query: 66  KQEEVAKARVRQVDDKGRAYGTGRRKCSIARVWIQPGDGKFVVNDKEFDVYFPMLDSRAA 125
           K E  A   V+++D +GRAY TG+RK ++ARVW++PG GK  VNDKEF+ YF     +  
Sbjct: 16  KTEAAAPVHVQKLDAQGRAYATGKRKDAVARVWVKPGTGKITVNDKEFEKYFARPVLQMI 75

Query: 126 LLRPFSETKTLGLWDVKCTVKGGGTTGQVGAIQLGISRALQNWEPDLRPPLRASGFLTRD 185
           L +P   +   G +D+  TV GGG +GQ GA++ GIS+AL ++EP LR  L+  GFLTRD
Sbjct: 76  LQQPIVASNRAGQFDIVATVAGGGLSGQAGAVRHGISKALTDYEPGLRTVLKKGGFLTRD 135

Query: 186 ARVVERKKPGKAKARKSFQWVKR 209
           +RVVERKK GKAKAR+SFQ+ KR
Sbjct: 136 SRVVERKKYGKAKARRSFQFSKR 158

[Close]
BLAST of Cla004950 vs. TrEMBL
Match: A0A0D2QA07_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G144100 PE=3 SV=1)

HSP 1 Score: 378.6 bits (971), Expect = 4.8e-102
Identity = 183/204 (89.71%), Postives = 197/204 (96.57%), Query Frame = 1 

Query: 5   GPNRVFGDLIAASGITDDMIDSLIALKDLEGVEGLPPLSEIEDMRYEKNTRKSSRAEIER 64
           GPNR FGDLIAASGITD M+DSLIALKDLEGVEGLPPLS IEDMRYEKNTRKS+RAE+ER
Sbjct: 168 GPNRAFGDLIAASGITDAMLDSLIALKDLEGVEGLPPLSVIEDMRYEKNTRKSTRAEMER 227

Query: 65  QKQEEVAKARVRQVDDKGRAYGTGRRKCSIARVWIQPGDGKFVVNDKEFDVYFPMLDSRA 124
           QK EE+AK RVRQVDDKGRAYGTGRRKCSIARVW++PGDGKF++NDKEFDVYFPMLD RA
Sbjct: 228 QKLEEMAKERVRQVDDKGRAYGTGRRKCSIARVWVEPGDGKFIINDKEFDVYFPMLDHRA 287

Query: 125 ALLRPFSETKTLGLWDVKCTVKGGGTTGQVGAIQLGISRALQNWEPDLRPPLRASGFLTR 184
           ALLRPFSETKTLGLWD+KCTVKGGG +GQVGAIQLGISRALQN+EP+LRPPLRA+GFLTR
Sbjct: 288 ALLRPFSETKTLGLWDIKCTVKGGGLSGQVGAIQLGISRALQNFEPELRPPLRAAGFLTR 347

Query: 185 DARVVERKKPGKAKARKSFQWVKR 209
           D+RVVERKKPGKAKARKSFQWVKR
Sbjct: 348 DSRVVERKKPGKAKARKSFQWVKR 371

[Close]
BLAST of Cla004950 vs. TrEMBL
Match: A0A068VAD7_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00004493001 PE=3 SV=1)

HSP 1 Score: 378.3 bits (970), Expect = 6.2e-102
Identity = 183/204 (89.71%), Postives = 193/204 (94.61%), Query Frame = 1 

Query: 5   GPNRVFGDLIAASGITDDMIDSLIALKDLEGVEGLPPLSEIEDMRYEKNTRKSSRAEIER 64
           GPNR FGDLIAASGIT+ M+DSLIALKDLEG++GLPPL EIEDMRY K+TRKS+RAEIER
Sbjct: 46  GPNRAFGDLIAASGITEAMLDSLIALKDLEGIQGLPPLREIEDMRYAKSTRKSARAEIER 105

Query: 65  QKQEEVAKARVRQVDDKGRAYGTGRRKCSIARVWIQPGDGKFVVNDKEFDVYFPMLDSRA 124
           QKQEE AKARVRQVDDKGRAYGTGRRKCSIARVW+QPGDGKFVVNDKEFDVYFPMLD RA
Sbjct: 106 QKQEEAAKARVRQVDDKGRAYGTGRRKCSIARVWVQPGDGKFVVNDKEFDVYFPMLDHRA 165

Query: 125 ALLRPFSETKTLGLWDVKCTVKGGGTTGQVGAIQLGISRALQNWEPDLRPPLRASGFLTR 184
           ALLRPFSETKTLG+WDV CTVKGGG +GQVGAIQLGISRALQNW PDLRPPLR  GFLTR
Sbjct: 166 ALLRPFSETKTLGMWDVSCTVKGGGVSGQVGAIQLGISRALQNWAPDLRPPLREGGFLTR 225

Query: 185 DARVVERKKPGKAKARKSFQWVKR 209
           D+RVVERKKPGKAKARKSFQWVKR
Sbjct: 226 DSRVVERKKPGKAKARKSFQWVKR 249

[Close]
BLAST of Cla004950 vs. TrEMBL
Match: M5XCE3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007404mg PE=3 SV=1)

HSP 1 Score: 377.9 bits (969), Expect = 8.1e-102
Identity = 179/204 (87.75%), Postives = 195/204 (95.59%), Query Frame = 1 

Query: 5   GPNRVFGDLIAASGITDDMIDSLIALKDLEGVEGLPPLSEIEDMRYEKNTRKSSRAEIER 64
           GPNR FGDL+AASGITD+M+D+LIALKD +G+ GLPPL EIED+RYEK+TRKSSRAEIER
Sbjct: 166 GPNRAFGDLVAASGITDEMLDTLIALKDFQGINGLPPLREIEDIRYEKSTRKSSRAEIER 225

Query: 65  QKQEEVAKARVRQVDDKGRAYGTGRRKCSIARVWIQPGDGKFVVNDKEFDVYFPMLDSRA 124
           QKQEE AKARVRQVDDKGRAYGTGRRKCS+ARVWIQPGDGKF +NDK+FDVYFPMLD RA
Sbjct: 226 QKQEEAAKARVRQVDDKGRAYGTGRRKCSVARVWIQPGDGKFTINDKQFDVYFPMLDHRA 285

Query: 125 ALLRPFSETKTLGLWDVKCTVKGGGTTGQVGAIQLGISRALQNWEPDLRPPLRASGFLTR 184
           ALLRPFSETKTLGLWD++CTV+GGGTTGQVGAIQLG+SRALQNWEPDLRP LR SGFLTR
Sbjct: 286 ALLRPFSETKTLGLWDIECTVQGGGTTGQVGAIQLGVSRALQNWEPDLRPALRDSGFLTR 345

Query: 185 DARVVERKKPGKAKARKSFQWVKR 209
           D+RVVERKKPGKAKARKSFQWVKR
Sbjct: 346 DSRVVERKKPGKAKARKSFQWVKR 369

[Close]
BLAST of Cla004950 vs. TrEMBL
Match: A0A0G4AM89_9ROSI (Ribosomal protein S5 domain 2-like superfamily protein OS=Melianthus villosus PE=2 SV=1)

HSP 1 Score: 377.5 bits (968), Expect = 1.1e-101
Identity = 181/204 (88.73%), Postives = 195/204 (95.59%), Query Frame = 1 

Query: 5   GPNRVFGDLIAASGITDDMIDSLIALKDLEGVEGLPPLSEIEDMRYEKNTRKSSRAEIER 64
           GPNR FGDLI+ASGITD M+DSLIALKDLEGVEGLPPL +IEDMRYEKNTRKS+RAEIER
Sbjct: 195 GPNRAFGDLISASGITDAMLDSLIALKDLEGVEGLPPLEDIEDMRYEKNTRKSTRAEIER 254

Query: 65  QKQEEVAKARVRQVDDKGRAYGTGRRKCSIARVWIQPGDGKFVVNDKEFDVYFPMLDSRA 124
           +KQEE+AKARVRQVDDKGRAYGTGRRKCSIARVWIQPGDGKF+VNDKEFDVYFP+LD RA
Sbjct: 255 RKQEEIAKARVRQVDDKGRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPVLDHRA 314

Query: 125 ALLRPFSETKTLGLWDVKCTVKGGGTTGQVGAIQLGISRALQNWEPDLRPPLRASGFLTR 184
           ALLRPFS+TKTLGLWDV CTVKGGG +GQVGAIQLG SRALQNWEPD+RP L++ GFLTR
Sbjct: 315 ALLRPFSDTKTLGLWDVNCTVKGGGVSGQVGAIQLGASRALQNWEPDMRPALKSGGFLTR 374

Query: 185 DARVVERKKPGKAKARKSFQWVKR 209
           D+RVVERKKPGKAKARKSFQWVKR
Sbjct: 375 DSRVVERKKPGKAKARKSFQWVKR 398

[Close]
BLAST of Cla004950 vs. TrEMBL
Match: A5AZM9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0080g00440 PE=3 SV=1)

HSP 1 Score: 377.1 bits (967), Expect = 1.4e-101
Identity = 183/204 (89.71%), Postives = 195/204 (95.59%), Query Frame = 1 

Query: 5   GPNRVFGDLIAASGITDDMIDSLIALKDLEGVEGLPPLSEIEDMRYEKNTRKSSRAEIER 64
           GPNR FGDLIAASGITD M+DSLIALKDLEGVEGLPPLSEIED+RYEKNTRKS+RAEIER
Sbjct: 154 GPNRAFGDLIAASGITDAMLDSLIALKDLEGVEGLPPLSEIEDIRYEKNTRKSTRAEIER 213

Query: 65  QKQEEVAKARVRQVDDKGRAYGTGRRKCSIARVWIQPGDGKFVVNDKEFDVYFPMLDSRA 124
           QKQEEVAKARVRQVD+KGRAYGTGRRKCSIARVW+QPGDGKF++NDK+FDVYFPMLD RA
Sbjct: 214 QKQEEVAKARVRQVDEKGRAYGTGRRKCSIARVWVQPGDGKFMINDKQFDVYFPMLDHRA 273

Query: 125 ALLRPFSETKTLGLWDVKCTVKGGGTTGQVGAIQLGISRALQNWEPDLRPPLRASGFLTR 184
           ALLRPFSETKTLGLWDV CTVKGGG +GQVGAI+LGISRALQNWEP LRP LR +GFLTR
Sbjct: 274 ALLRPFSETKTLGLWDVNCTVKGGGLSGQVGAIRLGISRALQNWEPGLRPQLREAGFLTR 333

Query: 185 DARVVERKKPGKAKARKSFQWVKR 209
           D RVVERKKPGKAKARKS+QWVKR
Sbjct: 334 DPRVVERKKPGKAKARKSYQWVKR 357

[Close]
BLAST of Cla004950 vs. NCBI nr
Match: gi|659074273|ref|XP_008437516.1| (PREDICTED: 28S ribosomal protein S9, mitochondrial [Cucumis melo])

HSP 1 Score: 392.9 bits (1008), Expect = 3.5e-106
Identity = 191/204 (93.63%), Postives = 199/204 (97.55%), Query Frame = 1 

Query: 5   GPNRVFGDLIAASGITDDMIDSLIALKDLEGVEGLPPLSEIEDMRYEKNTRKSSRAEIER 64
           GP+R FGDLIAASGITDDMIDSL+ALKDLEG+EGLPPLSEIEDMRYEKNTRKSSRAEIER
Sbjct: 202 GPDRAFGDLIAASGITDDMIDSLMALKDLEGIEGLPPLSEIEDMRYEKNTRKSSRAEIER 261

Query: 65  QKQEEVAKARVRQVDDKGRAYGTGRRKCSIARVWIQPGDGKFVVNDKEFDVYFPMLDSRA 124
           QKQEEVAKARVRQVDDKGRAYGTGRRKCSIARVWIQPG+GKF+VNDKEFDVYFPMLDSRA
Sbjct: 262 QKQEEVAKARVRQVDDKGRAYGTGRRKCSIARVWIQPGNGKFIVNDKEFDVYFPMLDSRA 321

Query: 125 ALLRPFSETKTLGLWDVKCTVKGGGTTGQVGAIQLGISRALQNWEPDLRPPLRASGFLTR 184
            LL+PF+ETKTLGLWDV CTVKGGGTTGQVGAIQLGISRALQNWEPD RPPLRA GFLTR
Sbjct: 322 VLLQPFAETKTLGLWDVSCTVKGGGTTGQVGAIQLGISRALQNWEPDFRPPLRACGFLTR 381

Query: 185 DARVVERKKPGKAKARKSFQWVKR 209
           D+RVVERKKPGKAKARKSFQWVKR
Sbjct: 382 DSRVVERKKPGKAKARKSFQWVKR 405

[Close]
BLAST of Cla004950 vs. NCBI nr
Match: gi|449456315|ref|XP_004145895.1| (PREDICTED: 28S ribosomal protein S9, mitochondrial [Cucumis sativus])

HSP 1 Score: 391.7 bits (1005), Expect = 7.8e-106
Identity = 191/204 (93.63%), Postives = 199/204 (97.55%), Query Frame = 1 

Query: 5   GPNRVFGDLIAASGITDDMIDSLIALKDLEGVEGLPPLSEIEDMRYEKNTRKSSRAEIER 64
           GPNR FGDLIAASG TDDMIDSL+ALKDLEG+EGLPPL+EIEDMRYEKNTRKSSRAEIER
Sbjct: 202 GPNRAFGDLIAASGFTDDMIDSLMALKDLEGIEGLPPLTEIEDMRYEKNTRKSSRAEIER 261

Query: 65  QKQEEVAKARVRQVDDKGRAYGTGRRKCSIARVWIQPGDGKFVVNDKEFDVYFPMLDSRA 124
           QKQEEVAKARVRQVD+KGRAYGTGRRKCSIARVWIQPG+GKFVVNDKEFDVYFPMLDSRA
Sbjct: 262 QKQEEVAKARVRQVDNKGRAYGTGRRKCSIARVWIQPGNGKFVVNDKEFDVYFPMLDSRA 321

Query: 125 ALLRPFSETKTLGLWDVKCTVKGGGTTGQVGAIQLGISRALQNWEPDLRPPLRASGFLTR 184
            LL+PF+ETKTLGLWDV CTVKGGGTTGQVGAIQLGISRALQNWEP+ RPPLRASGFLTR
Sbjct: 322 ILLQPFAETKTLGLWDVSCTVKGGGTTGQVGAIQLGISRALQNWEPEFRPPLRASGFLTR 381

Query: 185 DARVVERKKPGKAKARKSFQWVKR 209
           DARVVERKKPGKAKARKSFQWVKR
Sbjct: 382 DARVVERKKPGKAKARKSFQWVKR 405

[Close]
BLAST of Cla004950 vs. NCBI nr
Match: gi|255545214|ref|XP_002513668.1| (PREDICTED: 28S ribosomal protein S9, mitochondrial [Ricinus communis])

HSP 1 Score: 383.6 bits (984), Expect = 2.1e-103
Identity = 185/204 (90.69%), Postives = 197/204 (96.57%), Query Frame = 1 

Query: 5   GPNRVFGDLIAASGITDDMIDSLIALKDLEGVEGLPPLSEIEDMRYEKNTRKSSRAEIER 64
           G NR FGDLIAASGITD M+DSLIAL+D EGVEGLPPLSEIEDMRYEKNTRKS+RA+IER
Sbjct: 195 GSNRAFGDLIAASGITDAMLDSLIALRDFEGVEGLPPLSEIEDMRYEKNTRKSTRADIER 254

Query: 65  QKQEEVAKARVRQVDDKGRAYGTGRRKCSIARVWIQPGDGKFVVNDKEFDVYFPMLDSRA 124
           QKQEEVAK+RVRQVD+KGRAYGTGRRKCS+ARVWI+PGDGKF+VNDK+FDVYFPMLD RA
Sbjct: 255 QKQEEVAKSRVRQVDEKGRAYGTGRRKCSVARVWIEPGDGKFIVNDKQFDVYFPMLDHRA 314

Query: 125 ALLRPFSETKTLGLWDVKCTVKGGGTTGQVGAIQLGISRALQNWEPDLRPPLRASGFLTR 184
           ALLRPFSETKTLGLWDVKCTVKGGGTTGQVGAIQLGISRA+QNWEPDLRPPLR +GFLTR
Sbjct: 315 ALLRPFSETKTLGLWDVKCTVKGGGTTGQVGAIQLGISRAMQNWEPDLRPPLRNAGFLTR 374

Query: 185 DARVVERKKPGKAKARKSFQWVKR 209
           D RVVERKKPGKAKARKSFQWVKR
Sbjct: 375 DPRVVERKKPGKAKARKSFQWVKR 398

[Close]
BLAST of Cla004950 vs. NCBI nr
Match: gi|567858612|ref|XP_006421989.1| (hypothetical protein CICLE_v10005229mg [Citrus clementina])

HSP 1 Score: 381.3 bits (978), Expect = 1.1e-102
Identity = 185/204 (90.69%), Postives = 198/204 (97.06%), Query Frame = 1 

Query: 5   GPNRVFGDLIAASGITDDMIDSLIALKDLEGVEGLPPLSEIEDMRYEKNTRKSSRAEIER 64
           GP+R FGDLIAASGITD M++SLIALKDLEGVEGLPPLSEIE+MRYEKNTRKS+RAEIER
Sbjct: 153 GPSRAFGDLIAASGITDAMLESLIALKDLEGVEGLPPLSEIEEMRYEKNTRKSTRAEIER 212

Query: 65  QKQEEVAKARVRQVDDKGRAYGTGRRKCSIARVWIQPGDGKFVVNDKEFDVYFPMLDSRA 124
           QKQEEVAKARVRQVD+KGRAYGTGRRKCSIARVWIQPGDGKF+VNDKEFDVYFPMLD RA
Sbjct: 213 QKQEEVAKARVRQVDEKGRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRA 272

Query: 125 ALLRPFSETKTLGLWDVKCTVKGGGTTGQVGAIQLGISRALQNWEPDLRPPLRASGFLTR 184
           ALLRPFSETKTLGLWDV CTVKGGG +GQVGA++LGISRALQNWEPDLRP LR++GFLTR
Sbjct: 273 ALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTR 332

Query: 185 DARVVERKKPGKAKARKSFQWVKR 209
           D+RVVERKKPGKAKARKSFQWVKR
Sbjct: 333 DSRVVERKKPGKAKARKSFQWVKR 356

[Close]
BLAST of Cla004950 vs. NCBI nr
Match: gi|568875135|ref|XP_006490665.1| (PREDICTED: 37S ribosomal protein S9, mitochondrial-like [Citrus sinensis])

HSP 1 Score: 381.3 bits (978), Expect = 1.1e-102
Identity = 185/204 (90.69%), Postives = 198/204 (97.06%), Query Frame = 1 

Query: 5   GPNRVFGDLIAASGITDDMIDSLIALKDLEGVEGLPPLSEIEDMRYEKNTRKSSRAEIER 64
           GP+R FGDLIAASGITD M++SLIALKDLEGVEGLPPLSEIE+MRYEKNTRKS+RAEIER
Sbjct: 153 GPSRAFGDLIAASGITDAMLESLIALKDLEGVEGLPPLSEIEEMRYEKNTRKSTRAEIER 212

Query: 65  QKQEEVAKARVRQVDDKGRAYGTGRRKCSIARVWIQPGDGKFVVNDKEFDVYFPMLDSRA 124
           QKQEEVAKARVRQVD+KGRAYGTGRRKCSIARVWIQPGDGKF+VNDKEFDVYFPMLD RA
Sbjct: 213 QKQEEVAKARVRQVDEKGRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRA 272

Query: 125 ALLRPFSETKTLGLWDVKCTVKGGGTTGQVGAIQLGISRALQNWEPDLRPPLRASGFLTR 184
           ALLRPFSETKTLGLWDV CTVKGGG +GQVGA++LGISRALQNWEPDLRP LR++GFLTR
Sbjct: 273 ALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTR 332

Query: 185 DARVVERKKPGKAKARKSFQWVKR 209
           D+RVVERKKPGKAKARKSFQWVKR
Sbjct: 333 DSRVVERKKPGKAKARKSFQWVKR 356

The following BLAST results are available for this feature:
BLAST of Cla004950 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RS9_BART13.5e-3754.1730S ribosomal protein S9 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) ... [more]
RS9_AZOC54.5e-3755.0730S ribosomal protein S9 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 59... [more]
RS9_XANP21.3e-3652.9030S ribosomal protein S9 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / P... [more]
RS9_BRUA22.9e-3653.1530S ribosomal protein S9 OS=Brucella abortus (strain 2308) GN=rpsI PE=3 SV=1[more]
RS9_BRUA12.9e-3653.1530S ribosomal protein S9 OS=Brucella abortus (strain S19) GN=rpsI PE=3 SV=1[more]
BLAST of Cla004950 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0D2QA07_GOSRA4.8e-10289.71Uncharacterized protein OS=Gossypium raimondii GN=B456_006G144100 PE=3 SV=1[more]
A0A068VAD7_COFCA6.2e-10289.71Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00004493001 PE=3 SV=1[more]
M5XCE3_PRUPE8.1e-10287.75Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007404mg PE=3 SV=1[more]
A0A0G4AM89_9ROSI1.1e-10188.73Ribosomal protein S5 domain 2-like superfamily protein OS=Melianthus villosus PE... [more]
A5AZM9_VITVI1.4e-10189.71Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0080g00440 PE=3 SV=... [more]
BLAST of Cla004950 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659074273|ref|XP_008437516.1|3.5e-10693.63PREDICTED: 28S ribosomal protein S9, mitochondrial [Cucumis melo][more]
gi|449456315|ref|XP_004145895.1|7.8e-10693.63PREDICTED: 28S ribosomal protein S9, mitochondrial [Cucumis sativus][more]
gi|255545214|ref|XP_002513668.1|2.1e-10390.69PREDICTED: 28S ribosomal protein S9, mitochondrial [Ricinus communis][more]
gi|567858612|ref|XP_006421989.1|1.1e-10290.69hypothetical protein CICLE_v10005229mg [Citrus clementina][more]
gi|568875135|ref|XP_006490665.1|1.1e-10290.69PREDICTED: 37S ribosomal protein S9, mitochondrial-like [Citrus sinensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000754Ribosomal_S9
IPR014721Ribosomal_S5_D2-typ_fold_subgr
IPR020568Ribosomal_S5_D2-typ_fold
IPR020574Ribosomal_S9_CS
IPR023035Ribosomal_S9_bac/plastid
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006354 DNA-templated transcription, elongation
biological_process GO:0009220 pyrimidine ribonucleotide biosynthetic process
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0034654 nucleobase-containing compound biosynthetic process
biological_process GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
cellular_component GO:0005840 ribosome
cellular_component GO:0005763 mitochondrial small ribosomal subunit
cellular_component GO:0030529 intracellular ribonucleoprotein complex
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003723 RNA binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU36856watermelon unigene v2 vs TrEMBLtranscribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla004950Cla004950.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU36856WMU36856transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000754Ribosomal protein S9PANTHERPTHR21569RIBOSOMAL PROTEIN S9coord: 2..208
score: 1.9E
IPR000754Ribosomal protein S9PFAMPF00380Ribosomal_S9coord: 88..208
score: 1.7
IPR014721Ribosomal protein S5 domain 2-type fold, subgroupGENE3DG3DSA:3.30.230.10coord: 82..208
score: 6.9
IPR020568Ribosomal protein S5 domain 2-type foldunknownSSF54211Ribosomal protein S5 domain 2-likecoord: 83..208
score: 1.14
IPR020574Ribosomal protein S9, conserved sitePROSITEPS00360RIBOSOMAL_S9coord: 147..165
scor
IPR023035Ribosomal protein S9, bacterial/plastidHAMAPMF_00532_BRibosomal_S9_Bcoord: 79..208
score: 28
NoneNo IPR availablePANTHERPTHR21569:SF128S RIBOSOMAL PROTEIN S9, MITOCHONDRIALcoord: 2..208
score: 1.9E