CsGy4G025800 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy4G025800
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	RNA-binding (RRM/RBD/RNP motifs) family protein
Location	Chr4 : 31066027 .. 31069600 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CGAGTAATAAAAAGAAAAGCTAAGCATCAAAATCACCCGCCGTGCATTAATCCTCGAGTTCATAGTTATTTAGTTCCTTCTCCAAATCCTCAAATGGAGTTGCCAAGATTCAGCCGTCCAAACCAAGATTATGGATCTTCTTCTTCTTCTACCCCTATTCTCTACGTTGCTAACTGCGGACCCGCCGTCGGAATCAGCCACCCCGCAATCGCGGCCGTTTTTGCCCATTTTGGCCATGTCAAAGGTGTTCACCCCGCCGACGATACCGGCGCTCGTGTCATCGTATGTTTCTCTGAAGAATCCAGCGCCCGAGCCGCTCTTGAGGCGCTTCACGGCCGCCCTTGCCCTCTCCTTGGAGGCCGGACTTTGCACATACGTTATTCCATCACCAGACCATCCATTTCGCAACCTAATGATTCTCTTTCAGTTTCTTTGTCGGCTTCGGAGCTGGACATTCCCGGACTTTTCTTATTGCACGATTTCGTTAATGCTAAAGAAGAGGAGGTGAGCTTTTTAGTTGGATTATGAGGACTAGAGAAGGGTTTTTTCTTTTTCACTCCCTTTGTTCCATCGTTATTGATTTTTCGTGGTTTTGAAGGATTTGCTTAGGGAAGTTGATGCTCGACCTTGGAATAATCTGGCGAAACGCAGAGTTCAGCATTATGGGTATGAGTTTTGTTATCAAGTAAGTGGCAGGACTTTGTCTTTTCCCTCTTCCTACTTGCTGTTGTACTGAATGATTGTGCATTGTTAGGATTTGCGAGTAATGTAAATCAGTTGGATTTGTCTGTGTCTGTTTTTTTCTTTCTAGACGAGGAATGTTAATACTAAACATCAGTTGGGGGAACTTCCATCATTTGTTTCCCATGTAGTTGATAGGATCTCCATGTTTCCAAACACTGAGGATATTGCAGATGCTTCTCTTGATCAATTGACGGTAGGCTCTCTGTTTTTGATGAATCTCTAAACTTTGTTCCTTGTAGTCGGTTAGTTTTTTGTACAATCTTTGAAAATTGAGATTGTAGCTTTTGCTATCTGGAGTTGTTGTGATGTTTAGTATGAGACTGAAATTACTACAACATTACAGGTTAATGAATACCCACCTGGGGTGGGTTTGTCCCCTCATATAGACACCCATTCTGCATTTGAAGGATTAATTTTCAGCCTTTCCTTAGCAGGGCCATGCATTATGGAGTTTAGGAGATATCCTGAAGGCACTTGGCACAAATTCCCTTCAAGTATAGATTTGAAAATGGAGAATTCTGTAAACGACTCAAATTATCTGAGGAAAGCCATTTACCTCCCCCCTCGGTCTATGCTTCTACTGTCTGGAGAGGCACGCTATGTTTGGCATCACTACATTCCTCACCATAAGGTATAGCAAACCATCCATGAACAAATTGTTGCTTTAGTTTGGTTGATTTATGAAATTGTAGAGTTATCTATTATACATTTTGATAGGCCCGGTCATACATGTGTTTGCTCGCGAGTAAGGAAAGAGACGATGGTGTGAGAAATTGTAAGGGGTGTGTGGAGCTCATTAGTATGGAGTTCAGTTAGATTAGTATAGTGAGAGGAGGGTATCTTTAGGGAGAACTTTTGTGGCATTCTCTTTGAAAATTAGGAGTGGTTGGAAGCTTTCAGATCTTCTTTGTCATCTTGCTACTGGTTTATAGATAAATTGGCCTAGCCCCAGGCCCCTATCACATGTTAACAGATACGAATTGGTCTAGTAGTCTATTTTCAAATGGTTGGACCAATGGGTAAGGATGAGGTATACATTTGGATGTCTGTAAAAATTTTCAATAGTCATTTACTTATGATAATCATATTCACAAAGTCATTTTTATTTCAAATGTTTTAGAGGATTAAATTATGTTCTTGTTGGATAGCACAAGTGAGGGTAAATTGGACTAGAAACCGTGGGTATAAACATTTTTTTGGGTGTTCACAAAGGTGCCAGCCAAGCATACACAGCGGTTAAGAAGATAATTAGTTGTTGTCTGTTGATTAACATTATGATTTTGAACGAGAGACACTGCACTTATATGTTCAACCATATACTTGATAAATAATTTTTACTCATTCTGTTCTCATTTATGATACTGAAATTGGGCAAATGTTCTGTAATAGATTGACATGGTAAAGGACAGTTCTATCAGAAGGGGTCGTAGGAGAGTTTCTTTTACATTTCGCAAGGTGAGTAGATATAATGCATATGTTCTTTCCCTCCCTCTCGTACCTGTTGAGCTTACCTTACGTGCTTCTATTATCATTGATGTCAAGACAGCTATTATCGTACCCATGGCAATTCTGAAATATTATAAATGTTAAACTTCGGTATCACCAGACCATGTTATTCTAGTTTGATCCATTAATATTGAGGCACCTTGGCAATGGCTATATAACAGTAAAGAGAGGAAGCTAGAATTTAAAATGTCAGCTCTCCTATGGTTTCTTTCTTCCTTCATTAGATTTTGAATGATTGCTCACCTCTTAAAGTTCAGCGTATTTTCTCTTTTAGTGAACTTTAGTGCACAATCCATGGTGGTCACCTACTTAGGATGTAATATCCTTTAAGTTTTTTTAACACTACACCCAAATATTGTAAGCTCAGTCCTGTGAGATCAGCAGAGATGTTTGTAAATTAGCTCGAACAATCGCAAATAAAAAAATAGCCCAATCTCCTCCACGATTAACTTTTGCTCGATCTGTAGATTTTAGTCCTCAAGAGGTGCTTGGCTCATGGGGGCTTTTGGAGCTCATCTGATAGAATATAGGCCACAAAACCACAAATCAATCACAGCCACAAAGAGTACATAAACAGAAATTTGAAACCTTATTCTTCTCAGCATAATTCATATTGAGGTTATTCAAATCGAGAAACCTTTTACATGAAGCACGGTTTTTGCTTTACTAATGCTTGTTTGGCCATCCCGCTTTACAATGATGAAAACTTTTTGATAATAATGGAACTAAATATGTGGAAACTGGTTGAAATGTATGTGAATGGAATGACTAAGCCATGCTACAAAGTTGAAAATCTCAAGCCAATGCCTTGCGACTTGAAGATATGGTGGTAAAAACATATCTAGTAACCAGTTATTCGTTTGCTTCGATTTTCTCGGGATGCTATGCAAAATTCTACCGTTCTCTATGGTCTAAAAGTTGATGTTTTTATTTCATCTTATCATCTCACATGCCTTACCATGGTTGAATAAAGGGGAAAAAAATTGTCTTATTGTAGGTGAGAACTGATCCTTGCCAATGCAAATTTCCCCATTATTGCGATTCTCAGAGATAAATGAAAGGGCTCAATCCTCATTGAAGAACAGGCTGAGTTTTCTTTTTATCCTCATTCATCCATCCTTTTACATATGGTTCTTTAAAGTAGATTTTCTACATATTTTTACTTGGTTATACTTACAGGGGGATTTTTCGATACCTCTCACATTTATTGTTTAAATATTTTACCCTCTTATGTTCTAATTATGGATGCAGCAACAGCATTTTGTTAAACTCCCATTAATTACAGGGAATGAAACTGGGGATGTGGAAACGTTATAGAGGTTAA

mRNA sequence

CGAGTAATAAAAAGAAAAGCTAAGCATCAAAATCACCCGCCGTGCATTAATCCTCGAGTTCATAGTTATTTAGTTCCTTCTCCAAATCCTCAAATGGAGTTGCCAAGATTCAGCCGTCCAAACCAAGATTATGGATCTTCTTCTTCTTCTACCCCTATTCTCTACGTTGCTAACTGCGGACCCGCCGTCGGAATCAGCCACCCCGCAATCGCGGCCGTTTTTGCCCATTTTGGCCATGTCAAAGGTGTTCACCCCGCCGACGATACCGGCGCTCGTGTCATCGTATGTTTCTCTGAAGAATCCAGCGCCCGAGCCGCTCTTGAGGCGCTTCACGGCCGCCCTTGCCCTCTCCTTGGAGGCCGGACTTTGCACATACGTTATTCCATCACCAGACCATCCATTTCGCAACCTAATGATTCTCTTTCAGTTTCTTTGTCGGCTTCGGAGCTGGACATTCCCGGACTTTTCTTATTGCACGATTTCGTTAATGCTAAAGAAGAGGAGGATTTGCTTAGGGAAGTTGATGCTCGACCTTGGAATAATCTGGCGAAACGCAGAGTTCAGCATTATGGGTATGAGTTTTGTTATCAAACGAGGAATGTTAATACTAAACATCAGTTGGGGGAACTTCCATCATTTGTTTCCCATGTAGTTGATAGGATCTCCATGTTTCCAAACACTGAGGATATTGCAGATGCTTCTCTTGATCAATTGACGGTTAATGAATACCCACCTGGGGTGGGTTTGTCCCCTCATATAGACACCCATTCTGCATTTGAAGGATTAATTTTCAGCCTTTCCTTAGCAGGGCCATGCATTATGGAGTTTAGGAGATATCCTGAAGGCACTTGGCACAAATTCCCTTCAAGTATAGATTTGAAAATGGAGAATTCTGTAAACGACTCAAATTATCTGAGGAAAGCCATTTACCTCCCCCCTCGGTCTATGCTTCTACTGTCTGGAGAGGCACGCTATGTTTGGCATCACTACATTCCTCACCATAAGATTGACATGGTAAAGGACAGTTCTATCAGAAGGGGTCGTAGGAGAGTTTCTTTTACATTTCGCAAGGGAATGAAACTGGGGATGTGGAAACGTTATAGAGGTTAA

Coding sequence (CDS)

ATGGAGTTGCCAAGATTCAGCCGTCCAAACCAAGATTATGGATCTTCTTCTTCTTCTACCCCTATTCTCTACGTTGCTAACTGCGGACCCGCCGTCGGAATCAGCCACCCCGCAATCGCGGCCGTTTTTGCCCATTTTGGCCATGTCAAAGGTGTTCACCCCGCCGACGATACCGGCGCTCGTGTCATCGTATGTTTCTCTGAAGAATCCAGCGCCCGAGCCGCTCTTGAGGCGCTTCACGGCCGCCCTTGCCCTCTCCTTGGAGGCCGGACTTTGCACATACGTTATTCCATCACCAGACCATCCATTTCGCAACCTAATGATTCTCTTTCAGTTTCTTTGTCGGCTTCGGAGCTGGACATTCCCGGACTTTTCTTATTGCACGATTTCGTTAATGCTAAAGAAGAGGAGGATTTGCTTAGGGAAGTTGATGCTCGACCTTGGAATAATCTGGCGAAACGCAGAGTTCAGCATTATGGGTATGAGTTTTGTTATCAAACGAGGAATGTTAATACTAAACATCAGTTGGGGGAACTTCCATCATTTGTTTCCCATGTAGTTGATAGGATCTCCATGTTTCCAAACACTGAGGATATTGCAGATGCTTCTCTTGATCAATTGACGGTTAATGAATACCCACCTGGGGTGGGTTTGTCCCCTCATATAGACACCCATTCTGCATTTGAAGGATTAATTTTCAGCCTTTCCTTAGCAGGGCCATGCATTATGGAGTTTAGGAGATATCCTGAAGGCACTTGGCACAAATTCCCTTCAAGTATAGATTTGAAAATGGAGAATTCTGTAAACGACTCAAATTATCTGAGGAAAGCCATTTACCTCCCCCCTCGGTCTATGCTTCTACTGTCTGGAGAGGCACGCTATGTTTGGCATCACTACATTCCTCACCATAAGATTGACATGGTAAAGGACAGTTCTATCAGAAGGGGTCGTAGGAGAGTTTCTTTTACATTTCGCAAGGGAATGAAACTGGGGATGTGGAAACGTTATAGAGGTTAA

Protein sequence

MELPRFSRPNQDYGSSSSSTPILYVANCGPAVGISHPAIAAVFAHFGHVKGVHPADDTGARVIVCFSEESSARAALEALHGRPCPLLGGRTLHIRYSITRPSISQPNDSLSVSLSASELDIPGLFLLHDFVNAKEEEDLLREVDARPWNNLAKRRVQHYGYEFCYQTRNVNTKHQLGELPSFVSHVVDRISMFPNTEDIADASLDQLTVNEYPPGVGLSPHIDTHSAFEGLIFSLSLAGPCIMEFRRYPEGTWHKFPSSIDLKMENSVNDSNYLRKAIYLPPRSMLLLSGEARYVWHHYIPHHKIDMVKDSSIRRGRRRVSFTFRKGMKLGMWKRYRG

Homology

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BLAST of CsGy4G025800 vs. NCBI nr
Match: XP_004145573.1 (PREDICTED: alkylated DNA repair protein alkB homolog 8 [Cucumis sativus] >KGN55569.1 hypothetical protein Csa_4G669210 [Cucumis sativus])

HSP 1 Score: 672.2 bits (1733), Expect = 9.5e-190
Identity = 326/326 (100.00%), Postives = 326/326 (100.00%), Query Frame = 0


Query: 1   MELPRFSRPNQDYGSSSSSTPILYVANCGPAVGISHPAIAAVFAHFGHVKGVHPADDTGA 60
           MELPRFSRPNQDYGSSSSSTPILYVANCGPAVGISHPAIAAVFAHFGHVKGVHPADDTGA
Sbjct: 1   MELPRFSRPNQDYGSSSSSTPILYVANCGPAVGISHPAIAAVFAHFGHVKGVHPADDTGA 60

Query: 61  RVIVCFSEESSARAALEALHGRPCPLLGGRTLHIRYSITRPSISQPNDSLSVSLSASELD 120
           RVIVCFSEESSARAALEALHGRPCPLLGGRTLHIRYSITRPSISQPNDSLSVSLSASELD
Sbjct: 61  RVIVCFSEESSARAALEALHGRPCPLLGGRTLHIRYSITRPSISQPNDSLSVSLSASELD 120

Query: 121 IPGLFLLHDFVNAKEEEDLLREVDARPWNNLAKRRVQHYGYEFCYQTRNVNTKHQLGELP 180
           IPGLFLLHDFVNAKEEEDLLREVDARPWNNLAKRRVQHYGYEFCYQTRNVNTKHQLGELP
Sbjct: 121 IPGLFLLHDFVNAKEEEDLLREVDARPWNNLAKRRVQHYGYEFCYQTRNVNTKHQLGELP 180

Query: 181 SFVSHVVDRISMFPNTEDIADASLDQLTVNEYPPGVGLSPHIDTHSAFEGLIFSLSLAGP 240
           SFVSHVVDRISMFPNTEDIADASLDQLTVNEYPPGVGLSPHIDTHSAFEGLIFSLSLAGP
Sbjct: 181 SFVSHVVDRISMFPNTEDIADASLDQLTVNEYPPGVGLSPHIDTHSAFEGLIFSLSLAGP 240

Query: 241 CIMEFRRYPEGTWHKFPSSIDLKMENSVNDSNYLRKAIYLPPRSMLLLSGEARYVWHHYI 300
           CIMEFRRYPEGTWHKFPSSIDLKMENSVNDSNYLRKAIYLPPRSMLLLSGEARYVWHHYI
Sbjct: 241 CIMEFRRYPEGTWHKFPSSIDLKMENSVNDSNYLRKAIYLPPRSMLLLSGEARYVWHHYI 300

Query: 301 PHHKIDMVKDSSIRRGRRRVSFTFRK 327
           PHHKIDMVKDSSIRRGRRRVSFTFRK
Sbjct: 301 PHHKIDMVKDSSIRRGRRRVSFTFRK 326

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BLAST of CsGy4G025800 vs. NCBI nr
Match: XP_008444260.1 (PREDICTED: alkylated DNA repair protein alkB homolog 8 isoform X1 [Cucumis melo])

HSP 1 Score: 629.4 bits (1622), Expect = 7.0e-177
Identity = 306/326 (93.87%), Postives = 312/326 (95.71%), Query Frame = 0


Query: 1   MELPRFSRPNQDYGSSSSSTPILYVANCGPAVGISHPAIAAVFAHFGHVKGVHPADDTGA 60
           MELPRF+RPNQ  GSSSS  PILYVANCGPAVGISHP IAAVFAHFGHVKGVH ADDTGA
Sbjct: 1   MELPRFTRPNQHNGSSSS--PILYVANCGPAVGISHPTIAAVFAHFGHVKGVHAADDTGA 60

Query: 61  RVIVCFSEESSARAALEALHGRPCPLLGGRTLHIRYSITRPSISQPNDSLSVSLSASELD 120
           RVIVCFSEESSA+AALE LHGRPCPLLGGRTLHIRYSI RPSISQPNDS+SVSLSASELD
Sbjct: 61  RVIVCFSEESSAQAALETLHGRPCPLLGGRTLHIRYSIIRPSISQPNDSVSVSLSASELD 120

Query: 121 IPGLFLLHDFVNAKEEEDLLREVDARPWNNLAKRRVQHYGYEFCYQTRNVNTKHQLGELP 180
           IPGLFLLHDFVNAKEEEDLLREVDARPWNNLAKRRVQHYGYEFCYQTRNVNTKHQLGELP
Sbjct: 121 IPGLFLLHDFVNAKEEEDLLREVDARPWNNLAKRRVQHYGYEFCYQTRNVNTKHQLGELP 180

Query: 181 SFVSHVVDRISMFPNTEDIADASLDQLTVNEYPPGVGLSPHIDTHSAFEGLIFSLSLAGP 240
            FVSHVVDRIS+FPNTED+ADASLDQLTVNEYPPGVGLSPHIDTHSAFEGLIFSLSLAGP
Sbjct: 181 PFVSHVVDRISLFPNTEDVADASLDQLTVNEYPPGVGLSPHIDTHSAFEGLIFSLSLAGP 240

Query: 241 CIMEFRRYPEGTWHKFPSSIDLKMENSVNDSNYLRKAIYLPPRSMLLLSGEARYVWHHYI 300
           CIMEFRRYPEG WH+FP SIDLKMENSVNDSNYLRKAIYLPPRSMLLLSGEARY WHHYI
Sbjct: 241 CIMEFRRYPEGAWHEFPLSIDLKMENSVNDSNYLRKAIYLPPRSMLLLSGEARYAWHHYI 300

Query: 301 PHHKIDMVKDSSIRRGRRRVSFTFRK 327
           PHHKIDMVKDSSIRR  RRVSFTFRK
Sbjct: 301 PHHKIDMVKDSSIRRAPRRVSFTFRK 324

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BLAST of CsGy4G025800 vs. NCBI nr
Match: XP_022936765.1 (alkylated DNA repair protein alkB homolog 8 [Cucurbita moschata])

HSP 1 Score: 597.8 bits (1540), Expect = 2.3e-167
Identity = 293/326 (89.88%), Postives = 304/326 (93.25%), Query Frame = 0


Query: 1   MELPRFSRPNQDYGSSSSSTPILYVANCGPAVGISHPAIAAVFAHFGHVKGVHPADDTGA 60
           M+LPRF+RP  D GSSSSS P LYVANCGPAVGISH A+AAVF  FG VKGVH AD+TG 
Sbjct: 1   MDLPRFARPRGDNGSSSSS-PNLYVANCGPAVGISHRAVAAVFGDFGDVKGVHAADETGT 60

Query: 61  RVIVCFSEESSARAALEALHGRPCPLLGGRTLHIRYSITRPSISQPNDSLSVSLSASELD 120
           RVIVCFSEESSARAALEALHGRPC LLGGRTLHIRYSI RPSISQ NDS+SVSLSASELD
Sbjct: 61  RVIVCFSEESSARAALEALHGRPCSLLGGRTLHIRYSIIRPSISQLNDSISVSLSASELD 120

Query: 121 IPGLFLLHDFVNAKEEEDLLREVDARPWNNLAKRRVQHYGYEFCYQTRNVNTKHQLGELP 180
           IPGL+LLHDFV AKEEE+LL EVDARPWNNLAKRRVQHYGYEFCYQTRNVNT+HQLGELP
Sbjct: 121 IPGLYLLHDFVTAKEEEELLSEVDARPWNNLAKRRVQHYGYEFCYQTRNVNTRHQLGELP 180

Query: 181 SFVSHVVDRISMFPNTEDIADASLDQLTVNEYPPGVGLSPHIDTHSAFEGLIFSLSLAGP 240
           SFVSHVVDRISMFPN ED+ADA LDQLTVNEYPPGVGLSPHIDTHSAFEGLIFSLSLAGP
Sbjct: 181 SFVSHVVDRISMFPNAEDVADAVLDQLTVNEYPPGVGLSPHIDTHSAFEGLIFSLSLAGP 240

Query: 241 CIMEFRRYPEGTWHKFPSSIDLKMENSVNDSNYLRKAIYLPPRSMLLLSGEARYVWHHYI 300
           CIMEFRRY EGTWHK PSSIDLKMENSVNDSNYLR+AIYLPPRSMLLLSGEARY WHHYI
Sbjct: 241 CIMEFRRYTEGTWHKCPSSIDLKMENSVNDSNYLRRAIYLPPRSMLLLSGEARYAWHHYI 300

Query: 301 PHHKIDMVKDSSIRRGRRRVSFTFRK 327
           PHHKIDMVKDS+IRRG RRVSFTFRK
Sbjct: 301 PHHKIDMVKDSAIRRGPRRVSFTFRK 325

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BLAST of CsGy4G025800 vs. NCBI nr
Match: XP_023536576.1 (alkylated DNA repair protein alkB homolog 8 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 595.5 bits (1534), Expect = 1.1e-166
Identity = 292/326 (89.57%), Postives = 303/326 (92.94%), Query Frame = 0


Query: 1   MELPRFSRPNQDYGSSSSSTPILYVANCGPAVGISHPAIAAVFAHFGHVKGVHPADDTGA 60
           M+LPRF+RP  D GSSSSS P LYVANCGPAVGISH A+AAVF  FG VKGVH AD+TG 
Sbjct: 1   MDLPRFARPRGDNGSSSSS-PNLYVANCGPAVGISHRAVAAVFGDFGDVKGVHAADETGT 60

Query: 61  RVIVCFSEESSARAALEALHGRPCPLLGGRTLHIRYSITRPSISQPNDSLSVSLSASELD 120
           RVIVCFSEESSARAALEALHGRPC LLGGRTLHIRYSI RPSISQ NDS+SVSLSASELD
Sbjct: 61  RVIVCFSEESSARAALEALHGRPCSLLGGRTLHIRYSIIRPSISQLNDSVSVSLSASELD 120

Query: 121 IPGLFLLHDFVNAKEEEDLLREVDARPWNNLAKRRVQHYGYEFCYQTRNVNTKHQLGELP 180
           IPGL+LLHDFV AKEEE+LL EVDARPWNNLAKRRVQHYGYEFCYQTRNVNT+HQLGELP
Sbjct: 121 IPGLYLLHDFVTAKEEEELLSEVDARPWNNLAKRRVQHYGYEFCYQTRNVNTRHQLGELP 180

Query: 181 SFVSHVVDRISMFPNTEDIADASLDQLTVNEYPPGVGLSPHIDTHSAFEGLIFSLSLAGP 240
           SFVSHVVDRISMFPN ED+ADA LDQLTVNEYPPGVGLSPHIDTHSAFEGLIFSLSLAGP
Sbjct: 181 SFVSHVVDRISMFPNAEDVADAVLDQLTVNEYPPGVGLSPHIDTHSAFEGLIFSLSLAGP 240

Query: 241 CIMEFRRYPEGTWHKFPSSIDLKMENSVNDSNYLRKAIYLPPRSMLLLSGEARYVWHHYI 300
           CIMEFRRY EG WHK PS+IDLKMENSVNDSNYLRKAIYLPPRSMLLLSGEARY WHHYI
Sbjct: 241 CIMEFRRYTEGAWHKCPSNIDLKMENSVNDSNYLRKAIYLPPRSMLLLSGEARYAWHHYI 300

Query: 301 PHHKIDMVKDSSIRRGRRRVSFTFRK 327
           PHHKIDMVKDS+IRRG RRVSFTFRK
Sbjct: 301 PHHKIDMVKDSAIRRGPRRVSFTFRK 325

[Close]

BLAST of CsGy4G025800 vs. NCBI nr
Match: XP_016899844.1 (PREDICTED: alkylated DNA repair protein alkB homolog 8 isoform X2 [Cucumis melo])

HSP 1 Score: 594.3 bits (1531), Expect = 2.5e-166
Identity = 286/305 (93.77%), Postives = 293/305 (96.07%), Query Frame = 0


Query: 1   MELPRFSRPNQDYGSSSSSTPILYVANCGPAVGISHPAIAAVFAHFGHVKGVHPADDTGA 60
           MELPRF+RPNQ  GSSSS  PILYVANCGPAVGISHP IAAVFAHFGHVKGVH ADDTGA
Sbjct: 1   MELPRFTRPNQHNGSSSS--PILYVANCGPAVGISHPTIAAVFAHFGHVKGVHAADDTGA 60

Query: 61  RVIVCFSEESSARAALEALHGRPCPLLGGRTLHIRYSITRPSISQPNDSLSVSLSASELD 120
           RVIVCFSEESSA+AALE LHGRPCPLLGGRTLHIRYSI RPSISQPNDS+SVSLSASELD
Sbjct: 61  RVIVCFSEESSAQAALETLHGRPCPLLGGRTLHIRYSIIRPSISQPNDSVSVSLSASELD 120

Query: 121 IPGLFLLHDFVNAKEEEDLLREVDARPWNNLAKRRVQHYGYEFCYQTRNVNTKHQLGELP 180
           IPGLFLLHDFVNAKEEEDLLREVDARPWNNLAKRRVQHYGYEFCYQTRNVNTKHQLGELP
Sbjct: 121 IPGLFLLHDFVNAKEEEDLLREVDARPWNNLAKRRVQHYGYEFCYQTRNVNTKHQLGELP 180

Query: 181 SFVSHVVDRISMFPNTEDIADASLDQLTVNEYPPGVGLSPHIDTHSAFEGLIFSLSLAGP 240
            FVSHVVDRIS+FPNTED+ADASLDQLTVNEYPPGVGLSPHIDTHSAFEGLIFSLSLAGP
Sbjct: 181 PFVSHVVDRISLFPNTEDVADASLDQLTVNEYPPGVGLSPHIDTHSAFEGLIFSLSLAGP 240

Query: 241 CIMEFRRYPEGTWHKFPSSIDLKMENSVNDSNYLRKAIYLPPRSMLLLSGEARYVWHHYI 300
           CIMEFRRYPEG WH+FP SIDLKMENSVNDSNYLRKAIYLPPRSMLLLSGEARY WHHYI
Sbjct: 241 CIMEFRRYPEGAWHEFPLSIDLKMENSVNDSNYLRKAIYLPPRSMLLLSGEARYAWHHYI 300

Query: 301 PHHKI 306
           PHHK+
Sbjct: 301 PHHKV 303

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BLAST of CsGy4G025800 vs. TAIR10
Match: AT1G31600.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 420.2 bits (1079), Expect = 1.2e-117
Identity = 222/331 (67.07%), Postives = 252/331 (76.13%), Query Frame = 0


Query: 1   MELPRFSRPNQDYGSSSSSTP---ILYVANCGPAVGISHPAIAAVFAHFGHVKGVHPADD 60
           M  PRF RP Q   SS S  P    LYVANCGPAVG++H AIAAVFA FG V GV+ ADD
Sbjct: 86  MVQPRFVRPTQSSPSSISGEPNSSNLYVANCGPAVGLTHNAIAAVFAEFGEVNGVYAADD 145

Query: 61  TGARVIVCFSEESSARAALEALHGRPCPLLGGRTLHIRYSITR-PSISQPNDSLSVSLSA 120
           +G RVIV F++  SA+AALEAL GRPCP L GR+LHIRYS+ + PS +Q ND + VSL  
Sbjct: 146 SGVRVIVSFADPFSAKAALEALSGRPCPDLKGRSLHIRYSVLQLPSETQVNDCVPVSLID 205

Query: 121 SELDIPGLFLLHDFVNAKEEEDLLREVDARPWNNLAKRRVQHYGYEFCYQTRNVNTKHQL 180
           SEL+IPGLFLL DFV   EE+ LL  VDAR W  LAKRRVQHYGYEFCY TRNV+TK +L
Sbjct: 206 SELNIPGLFLLPDFVTVAEEQQLLAAVDARHWIGLAKRRVQHYGYEFCYGTRNVDTKKRL 265

Query: 181 GELPSFVSHVVDRISMFPNTED-IADASLDQLTVNEYPPGVGLSPHIDTHSAFEGLIFSL 240
           GELPSFVS +++RI +FPN ++  A  +LDQLTVNEYP GVGLSPHIDTHSAFE  IFSL
Sbjct: 266 GELPSFVSPILERIYLFPNFDNGSASLNLDQLTVNEYPSGVGLSPHIDTHSAFEDCIFSL 325

Query: 241 SLAGPCIMEFRRYPEGTWHKFPSSIDLKMENSVNDSNYLRKAIYLPPRSMLLLSGEARYV 300
           SLAGPCIMEFRRY   TW    S+ D +      DS+ ++KA+YLPPRSMLLLSGEARY 
Sbjct: 326 SLAGPCIMEFRRYSVSTWK--ASTTDAEKS---GDSSCIKKALYLPPRSMLLLSGEARYA 385

Query: 301 WHHYIPHHKIDMVKDSSIRRGRRRVSFTFRK 327
           W+HYIPHHKID VKD  IRR  RRVSFT RK
Sbjct: 386 WNHYIPHHKIDKVKDKVIRRSSRRVSFTLRK 411

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BLAST of CsGy4G025800 vs. TAIR10
Match: AT4G02485.1 (2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein)

HSP 1 Score: 70.9 bits (172), Expect = 1.7e-12
Identity = 58/218 (26.61%), Postives = 91/218 (41.74%), Query Frame = 0


Query: 120 DIPGLFLLHDFVNAKEEEDLLREVDARPWNNLAKRRVQHYGYEFCYQTRNVNTKHQLGEL 179
           +I GL+L  +F++   +  LL  +    W                +   ++N   + G+L
Sbjct: 43  EINGLWLYRNFLSIAHQSHLLSAILNEGW----------------FVEESINQAMRFGDL 102

Query: 180 PSFVSHVVDRISMFPNTEDIADAS---------LDQLTVNEYPPGVGLSPHIDTHSAFEG 239
           PS+ + + D I     + D+   S          DQL VN Y PG G+  H+D    FE 
Sbjct: 103 PSWATELSDLIRETLESVDLPVLSADLLWREPLFDQLIVNLYQPGEGICAHVDL-LRFED 162

Query: 240 LIFSLSLAGPCIMEFRRYPEGTWHKFPSSIDLKMENSVNDSNYLRKAIYLPPRSMLLLSG 299
            I  +SL  PC+M F                    +    + Y    + L P S++L+SG
Sbjct: 163 GIAIVSLESPCVMRF--------------------SPAEKNEYEAVDVLLNPGSLILMSG 222

Query: 300 EARYVWHHYI--PHHKIDMVKDSSIRRGRRRVSFTFRK 327
           EARY W H I    +   + +   I + +RR+S T RK
Sbjct: 223 EARYRWKHEINRKQNGFQLWEGEEIDQ-KRRISITLRK 222

[Close]

BLAST of CsGy4G025800 vs. Swiss-Prot
Match: sp|Q8RWY1|ALKB8_ARATH (Alkylated DNA repair protein ALKBH8 homolog OS=Arabidopsis thaliana OX=3702 GN=ALKBH8 PE=2 SV=2)

HSP 1 Score: 420.2 bits (1079), Expect = 2.1e-116
Identity = 222/331 (67.07%), Postives = 252/331 (76.13%), Query Frame = 0


Query: 1   MELPRFSRPNQDYGSSSSSTP---ILYVANCGPAVGISHPAIAAVFAHFGHVKGVHPADD 60
           M  PRF RP Q   SS S  P    LYVANCGPAVG++H AIAAVFA FG V GV+ ADD
Sbjct: 1   MVQPRFVRPTQSSPSSISGEPNSSNLYVANCGPAVGLTHNAIAAVFAEFGEVNGVYAADD 60

Query: 61  TGARVIVCFSEESSARAALEALHGRPCPLLGGRTLHIRYSITR-PSISQPNDSLSVSLSA 120
           +G RVIV F++  SA+AALEAL GRPCP L GR+LHIRYS+ + PS +Q ND + VSL  
Sbjct: 61  SGVRVIVSFADPFSAKAALEALSGRPCPDLKGRSLHIRYSVLQLPSETQVNDCVPVSLID 120

Query: 121 SELDIPGLFLLHDFVNAKEEEDLLREVDARPWNNLAKRRVQHYGYEFCYQTRNVNTKHQL 180
           SEL+IPGLFLL DFV   EE+ LL  VDAR W  LAKRRVQHYGYEFCY TRNV+TK +L
Sbjct: 121 SELNIPGLFLLPDFVTVAEEQQLLAAVDARHWIGLAKRRVQHYGYEFCYGTRNVDTKKRL 180

Query: 181 GELPSFVSHVVDRISMFPNTED-IADASLDQLTVNEYPPGVGLSPHIDTHSAFEGLIFSL 240
           GELPSFVS +++RI +FPN ++  A  +LDQLTVNEYP GVGLSPHIDTHSAFE  IFSL
Sbjct: 181 GELPSFVSPILERIYLFPNFDNGSASLNLDQLTVNEYPSGVGLSPHIDTHSAFEDCIFSL 240

Query: 241 SLAGPCIMEFRRYPEGTWHKFPSSIDLKMENSVNDSNYLRKAIYLPPRSMLLLSGEARYV 300
           SLAGPCIMEFRRY   TW    S+ D +      DS+ ++KA+YLPPRSMLLLSGEARY 
Sbjct: 241 SLAGPCIMEFRRYSVSTWK--ASTTDAEKS---GDSSCIKKALYLPPRSMLLLSGEARYA 300

Query: 301 WHHYIPHHKIDMVKDSSIRRGRRRVSFTFRK 327
           W+HYIPHHKID VKD  IRR  RRVSFT RK
Sbjct: 301 WNHYIPHHKIDKVKDKVIRRSSRRVSFTLRK 326

[Close]

BLAST of CsGy4G025800 vs. Swiss-Prot
Match: sp|Q07G10|ALKB8_XENTR (Alkylated DNA repair protein alkB homolog 8 OS=Xenopus tropicalis OX=8364 GN=alkbh8 PE=2 SV=2)

HSP 1 Score: 127.5 bits (319), Expect = 2.8e-28
Identity = 101/326 (30.98%), Postives = 151/326 (46.32%), Query Frame = 0


Query: 23  LYVANCGPAVGISHPAIAAVFAHFGHVKG-VHPADDTGARVIVCFSEESSARAALEALHG 82
           L VAN G   G+S   + AV    G V+  + P +   A   V +S    A  A  +L G
Sbjct: 45  LVVANGGLGNGVSRQQLLAVLERCGKVETLLMPPNKPYA--FVTYSSAEEAIKAYSSLSG 104

Query: 83  RP-CPLLGGRTLHIRYSITRPSISQPNDSLSVSLSASELDIPGLFLLHDFVNAKEEEDLL 142
           +  C     + + +  S     + +  + LS SL       PGL ++ DFV+ ++E  +L
Sbjct: 105 QELCGEDAEQPITLYLSFVEKVVVK--EVLSPSLP------PGLIIVEDFVSPEQERTML 164

Query: 143 REVD----ARPWNNLAKRRVQHYGYEFCYQTRNVNTKHQL-GELPSFVSHVVDRISMFPN 202
             +D         +L  R+V+HYGYEF Y   NV+    L G LP F +  + +      
Sbjct: 165 ESIDWDSETSSQKSLKHRQVKHYGYEFRYDNNNVDKDKPLPGGLPDFCTEALRKCVQ--- 224

Query: 203 TEDIADASLDQLTVNEYPPGVGLSPHIDTHSAFEGLIFSLSLAGPCIMEFRRYPEGTWHK 262
              +     DQLT+N+Y PG G+ PH+DTHSAFE  I SLSL    +M+F ++P G+   
Sbjct: 225 -RGLIKHDPDQLTINQYEPGQGIPPHVDTHSAFEDEILSLSLGAEIVMDF-KHPNGS--- 284

Query: 263 FPSSIDLKMENSVNDSNYLRKAIYLPPRSMLLLSGEARYVWHHYIPHHKIDMVKDS---- 322
                                 + LP RS+L++SGE+RY+W H I   K D+++ S    
Sbjct: 285 -------------------VVPVMLPQRSLLIMSGESRYLWTHGITPRKFDVIQVSEGQT 333

Query: 323 -----------SIRRGRRRVSFTFRK 327
                      ++ +   R SFTFRK
Sbjct: 345 VGTISGNSGELTLSKRSTRTSFTFRK 333

[Close]

BLAST of CsGy4G025800 vs. Swiss-Prot
Match: sp|Q95K79|ALKB8_MACFA (Alkylated DNA repair protein alkB homolog 8 OS=Macaca fascicularis OX=9541 GN=ALKBH8 PE=2 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 5.0e-25
Identity = 76/228 (33.33%), Postives = 112/228 (49.12%), Query Frame = 0


Query: 122 PGLFLLHDFVNAKEEEDLLREVD-------ARPWNNLAKRRVQHYGYEFCYQTRNVNTKH 181
           PGL ++ + ++++EE+ LL  VD            +L  RRV+H+GYEF Y+  NV+   
Sbjct: 135 PGLMVVEEIISSEEEKMLLESVDWTEDTDNQNSQKSLKHRRVKHFGYEFHYENNNVDKDK 194

Query: 182 QL-GELPSFVSHVVDRISMFPNTEDIADASLDQLTVNEYPPGVGLSPHIDTHSAFEGLIF 241
            L G LP      +++       E       DQ+T+N+Y PG G+  HIDTHSAFE  I 
Sbjct: 195 PLPGGLPDICDSFLEKWL----REGYIKHKPDQMTINQYEPGQGIPAHIDTHSAFEDEIV 254

Query: 242 SLSLAGPCIMEFRRYPEGTWHKFPSSIDLKMENSVNDSNYLRKAIYLPPRSMLLLSGEAR 301
           SLSL    +M+F ++P+GT                         + LP RS+L+++GE+R
Sbjct: 255 SLSLGSEIVMDF-KHPDGT----------------------AVPVMLPRRSLLVMTGESR 314

Query: 302 YVWHHYIPHHKIDMVK---------------DSSIRRGRRRVSFTFRK 327
           Y+W H I   K D V+               D ++ +   R SFTFRK
Sbjct: 315 YLWTHGITCRKFDTVQASENHKSGIITSDVGDLTLSKRGLRTSFTFRK 335

[Close]

BLAST of CsGy4G025800 vs. Swiss-Prot
Match: sp|A1A4L5|ALKB8_BOVIN (Alkylated DNA repair protein alkB homolog 8 OS=Bos taurus OX=9913 GN=ALKBH8 PE=2 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 3.2e-24
Identity = 76/228 (33.33%), Postives = 114/228 (50.00%), Query Frame = 0


Query: 122 PGLFLLHDFVNAKEEEDLLREV----DARPWN---NLAKRRVQHYGYEFCYQTRNVNTKH 181
           PGL ++ + +++++E+ LL  V    D    N   +L  RRV+H+GYEF Y+  NV+   
Sbjct: 135 PGLKVIEEIISSEDEKMLLESVNWTEDTENQNFQKSLKHRRVKHFGYEFHYENNNVDKDK 194

Query: 182 QL-GELPSFVSHVVDRISMFPNTEDIADASLDQLTVNEYPPGVGLSPHIDTHSAFEGLIF 241
            L G LP     ++++       E       DQLT+N+Y PG G+  HIDTHSAFE  I 
Sbjct: 195 PLPGGLPDICESILEKWL----KEGFIKHKPDQLTINQYEPGHGIPAHIDTHSAFEDEII 254

Query: 242 SLSLAGPCIMEFRRYPEGTWHKFPSSIDLKMENSVNDSNYLRKAIYLPPRSMLLLSGEAR 301
           SLSL    +M+F ++P+G                      +   + LP RS+L+++GE+R
Sbjct: 255 SLSLGSEIVMDF-KHPDG----------------------MTVPVMLPCRSLLVMTGESR 314

Query: 302 YVWHHYIPHHKIDM---------------VKDSSIRRGRRRVSFTFRK 327
           Y+W H I   K D                V+D ++ +   R SFTFRK
Sbjct: 315 YLWTHGITPRKFDTVQASKGHKSGIITSDVEDLTLNKRGIRTSFTFRK 335

[Close]

BLAST of CsGy4G025800 vs. Swiss-Prot
Match: sp|Q96BT7|ALKB8_HUMAN (Alkylated DNA repair protein alkB homolog 8 OS=Homo sapiens OX=9606 GN=ALKBH8 PE=1 SV=2)

HSP 1 Score: 113.6 bits (283), Expect = 4.2e-24
Identity = 74/228 (32.46%), Postives = 112/228 (49.12%), Query Frame = 0


Query: 122 PGLFLLHDFVNAKEEEDLLREVD-------ARPWNNLAKRRVQHYGYEFCYQTRNVNTKH 181
           PGL ++ + ++++EE+ LL  VD            +L  RRV+H+GYEF Y+  NV+   
Sbjct: 135 PGLMVVEEIISSEEEKMLLESVDWTEDTDNQNSQKSLKHRRVKHFGYEFHYENNNVDKDK 194

Query: 182 QL-GELPSFVSHVVDRISMFPNTEDIADASLDQLTVNEYPPGVGLSPHIDTHSAFEGLIF 241
            L G LP      +++       +       DQ+T+N+Y PG G+  HIDTHSAFE  I 
Sbjct: 195 PLSGGLPDICESFLEKWL----RKGYIKHKPDQMTINQYEPGQGIPAHIDTHSAFEDEIV 254

Query: 242 SLSLAGPCIMEFRRYPEGTWHKFPSSIDLKMENSVNDSNYLRKAIYLPPRSMLLLSGEAR 301
           SLSL    +M+F ++P+G                      +   + LP RS+L+++GE+R
Sbjct: 255 SLSLGSEIVMDF-KHPDG----------------------IAVPVMLPRRSLLVMTGESR 314

Query: 302 YVWHHYIPHHKIDMVK---------------DSSIRRGRRRVSFTFRK 327
           Y+W H I   K D V+               D ++ +   R SFTFRK
Sbjct: 315 YLWTHGITCRKFDTVQASESLKSGIITSDVGDLTLSKRGLRTSFTFRK 335

[Close]

BLAST of CsGy4G025800 vs. TrEMBL
Match: tr|A0A0A0L3H6|A0A0A0L3H6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G669210 PE=4 SV=1)

HSP 1 Score: 672.2 bits (1733), Expect = 6.3e-190
Identity = 326/326 (100.00%), Postives = 326/326 (100.00%), Query Frame = 0


Query: 1   MELPRFSRPNQDYGSSSSSTPILYVANCGPAVGISHPAIAAVFAHFGHVKGVHPADDTGA 60
           MELPRFSRPNQDYGSSSSSTPILYVANCGPAVGISHPAIAAVFAHFGHVKGVHPADDTGA
Sbjct: 1   MELPRFSRPNQDYGSSSSSTPILYVANCGPAVGISHPAIAAVFAHFGHVKGVHPADDTGA 60

Query: 61  RVIVCFSEESSARAALEALHGRPCPLLGGRTLHIRYSITRPSISQPNDSLSVSLSASELD 120
           RVIVCFSEESSARAALEALHGRPCPLLGGRTLHIRYSITRPSISQPNDSLSVSLSASELD
Sbjct: 61  RVIVCFSEESSARAALEALHGRPCPLLGGRTLHIRYSITRPSISQPNDSLSVSLSASELD 120

Query: 121 IPGLFLLHDFVNAKEEEDLLREVDARPWNNLAKRRVQHYGYEFCYQTRNVNTKHQLGELP 180
           IPGLFLLHDFVNAKEEEDLLREVDARPWNNLAKRRVQHYGYEFCYQTRNVNTKHQLGELP
Sbjct: 121 IPGLFLLHDFVNAKEEEDLLREVDARPWNNLAKRRVQHYGYEFCYQTRNVNTKHQLGELP 180

Query: 181 SFVSHVVDRISMFPNTEDIADASLDQLTVNEYPPGVGLSPHIDTHSAFEGLIFSLSLAGP 240
           SFVSHVVDRISMFPNTEDIADASLDQLTVNEYPPGVGLSPHIDTHSAFEGLIFSLSLAGP
Sbjct: 181 SFVSHVVDRISMFPNTEDIADASLDQLTVNEYPPGVGLSPHIDTHSAFEGLIFSLSLAGP 240

Query: 241 CIMEFRRYPEGTWHKFPSSIDLKMENSVNDSNYLRKAIYLPPRSMLLLSGEARYVWHHYI 300
           CIMEFRRYPEGTWHKFPSSIDLKMENSVNDSNYLRKAIYLPPRSMLLLSGEARYVWHHYI
Sbjct: 241 CIMEFRRYPEGTWHKFPSSIDLKMENSVNDSNYLRKAIYLPPRSMLLLSGEARYVWHHYI 300

Query: 301 PHHKIDMVKDSSIRRGRRRVSFTFRK 327
           PHHKIDMVKDSSIRRGRRRVSFTFRK
Sbjct: 301 PHHKIDMVKDSSIRRGRRRVSFTFRK 326

[Close]

BLAST of CsGy4G025800 vs. TrEMBL
Match: tr|A0A1S3B9H0|A0A1S3B9H0_CUCME (alkylated DNA repair protein alkB homolog 8 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487636 PE=4 SV=1)

HSP 1 Score: 629.4 bits (1622), Expect = 4.7e-177
Identity = 306/326 (93.87%), Postives = 312/326 (95.71%), Query Frame = 0


Query: 1   MELPRFSRPNQDYGSSSSSTPILYVANCGPAVGISHPAIAAVFAHFGHVKGVHPADDTGA 60
           MELPRF+RPNQ  GSSSS  PILYVANCGPAVGISHP IAAVFAHFGHVKGVH ADDTGA
Sbjct: 1   MELPRFTRPNQHNGSSSS--PILYVANCGPAVGISHPTIAAVFAHFGHVKGVHAADDTGA 60

Query: 61  RVIVCFSEESSARAALEALHGRPCPLLGGRTLHIRYSITRPSISQPNDSLSVSLSASELD 120
           RVIVCFSEESSA+AALE LHGRPCPLLGGRTLHIRYSI RPSISQPNDS+SVSLSASELD
Sbjct: 61  RVIVCFSEESSAQAALETLHGRPCPLLGGRTLHIRYSIIRPSISQPNDSVSVSLSASELD 120

Query: 121 IPGLFLLHDFVNAKEEEDLLREVDARPWNNLAKRRVQHYGYEFCYQTRNVNTKHQLGELP 180
           IPGLFLLHDFVNAKEEEDLLREVDARPWNNLAKRRVQHYGYEFCYQTRNVNTKHQLGELP
Sbjct: 121 IPGLFLLHDFVNAKEEEDLLREVDARPWNNLAKRRVQHYGYEFCYQTRNVNTKHQLGELP 180

Query: 181 SFVSHVVDRISMFPNTEDIADASLDQLTVNEYPPGVGLSPHIDTHSAFEGLIFSLSLAGP 240
            FVSHVVDRIS+FPNTED+ADASLDQLTVNEYPPGVGLSPHIDTHSAFEGLIFSLSLAGP
Sbjct: 181 PFVSHVVDRISLFPNTEDVADASLDQLTVNEYPPGVGLSPHIDTHSAFEGLIFSLSLAGP 240

Query: 241 CIMEFRRYPEGTWHKFPSSIDLKMENSVNDSNYLRKAIYLPPRSMLLLSGEARYVWHHYI 300
           CIMEFRRYPEG WH+FP SIDLKMENSVNDSNYLRKAIYLPPRSMLLLSGEARY WHHYI
Sbjct: 241 CIMEFRRYPEGAWHEFPLSIDLKMENSVNDSNYLRKAIYLPPRSMLLLSGEARYAWHHYI 300

Query: 301 PHHKIDMVKDSSIRRGRRRVSFTFRK 327
           PHHKIDMVKDSSIRR  RRVSFTFRK
Sbjct: 301 PHHKIDMVKDSSIRRAPRRVSFTFRK 324

[Close]

BLAST of CsGy4G025800 vs. TrEMBL
Match: tr|A0A1S4DV33|A0A1S4DV33_CUCME (alkylated DNA repair protein alkB homolog 8 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487636 PE=4 SV=1)

HSP 1 Score: 594.3 bits (1531), Expect = 1.7e-166
Identity = 286/305 (93.77%), Postives = 293/305 (96.07%), Query Frame = 0


Query: 1   MELPRFSRPNQDYGSSSSSTPILYVANCGPAVGISHPAIAAVFAHFGHVKGVHPADDTGA 60
           MELPRF+RPNQ  GSSSS  PILYVANCGPAVGISHP IAAVFAHFGHVKGVH ADDTGA
Sbjct: 1   MELPRFTRPNQHNGSSSS--PILYVANCGPAVGISHPTIAAVFAHFGHVKGVHAADDTGA 60

Query: 61  RVIVCFSEESSARAALEALHGRPCPLLGGRTLHIRYSITRPSISQPNDSLSVSLSASELD 120
           RVIVCFSEESSA+AALE LHGRPCPLLGGRTLHIRYSI RPSISQPNDS+SVSLSASELD
Sbjct: 61  RVIVCFSEESSAQAALETLHGRPCPLLGGRTLHIRYSIIRPSISQPNDSVSVSLSASELD 120

Query: 121 IPGLFLLHDFVNAKEEEDLLREVDARPWNNLAKRRVQHYGYEFCYQTRNVNTKHQLGELP 180
           IPGLFLLHDFVNAKEEEDLLREVDARPWNNLAKRRVQHYGYEFCYQTRNVNTKHQLGELP
Sbjct: 121 IPGLFLLHDFVNAKEEEDLLREVDARPWNNLAKRRVQHYGYEFCYQTRNVNTKHQLGELP 180

Query: 181 SFVSHVVDRISMFPNTEDIADASLDQLTVNEYPPGVGLSPHIDTHSAFEGLIFSLSLAGP 240
            FVSHVVDRIS+FPNTED+ADASLDQLTVNEYPPGVGLSPHIDTHSAFEGLIFSLSLAGP
Sbjct: 181 PFVSHVVDRISLFPNTEDVADASLDQLTVNEYPPGVGLSPHIDTHSAFEGLIFSLSLAGP 240

Query: 241 CIMEFRRYPEGTWHKFPSSIDLKMENSVNDSNYLRKAIYLPPRSMLLLSGEARYVWHHYI 300
           CIMEFRRYPEG WH+FP SIDLKMENSVNDSNYLRKAIYLPPRSMLLLSGEARY WHHYI
Sbjct: 241 CIMEFRRYPEGAWHEFPLSIDLKMENSVNDSNYLRKAIYLPPRSMLLLSGEARYAWHHYI 300

Query: 301 PHHKI 306
           PHHK+
Sbjct: 301 PHHKV 303

[Close]

BLAST of CsGy4G025800 vs. TrEMBL
Match: tr|D7TFE1|D7TFE1_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_02s0087g00460 PE=4 SV=1)

HSP 1 Score: 474.9 bits (1221), Expect = 1.5e-130
Identity = 237/326 (72.70%), Postives = 266/326 (81.60%), Query Frame = 0


Query: 1   MELPRFSRPNQDYGSSSSSTPILYVANCGPAVGISHPAIAAVFAHFGHVKGVHPADDTGA 60
           M LPRFSRP    G     +P LYVANCGPAVG+S   IA+VF+ FG VKGV+PADD+GA
Sbjct: 573 MGLPRFSRPK---GVDGELSPNLYVANCGPAVGLSFDTIASVFSTFGEVKGVYPADDSGA 632

Query: 61  RVIVCFSEESSARAALEALHGRPCPLLGGRTLHIRYSITRPSISQPNDSLSVSLSASELD 120
           RVIV + EES+A+AAL+AL G PCP LGGR LHIRYSI +P  SQ NDS+ VSL  SEL+
Sbjct: 633 RVIVSYFEESAAQAALKALDGHPCPALGGRFLHIRYSIFQPP-SQVNDSVPVSLVDSELN 692

Query: 121 IPGLFLLHDFVNAKEEEDLLREVDARPWNNLAKRRVQHYGYEFCYQTRNVNTKHQLGELP 180
           IPG++LLHDFV+AKEEE+LL  VD   W +L+KRRVQHYGYEFCY+TRNVNTK  LG+LP
Sbjct: 693 IPGIYLLHDFVSAKEEEELLAAVDKMSWKSLSKRRVQHYGYEFCYETRNVNTKQYLGKLP 752

Query: 181 SFVSHVVDRISMFPNTEDIADASLDQLTVNEYPPGVGLSPHIDTHSAFEGLIFSLSLAGP 240
           SFVS +V+RIS FPN E  AD  LDQLTVNEYPPGVGLSPHIDTHSAFEG IFSLSLAGP
Sbjct: 753 SFVSAIVERISSFPNLESAADIVLDQLTVNEYPPGVGLSPHIDTHSAFEGFIFSLSLAGP 812

Query: 241 CIMEFRRYPEGTWHKFPSSIDLKMENSVNDSNYLRKAIYLPPRSMLLLSGEARYVWHHYI 300
           CIM+FRRY EG W K  SS D+ +E     S++LR+AIYLPPRSMLLLSGEARY WHHYI
Sbjct: 813 CIMDFRRYTEGVWPKSASSSDMSVEYPDKSSSFLRRAIYLPPRSMLLLSGEARYAWHHYI 872

Query: 301 PHHKIDMVKDSSIRRGRRRVSFTFRK 327
           PHHKIDMVKDS IRRG RRVSFTFRK
Sbjct: 873 PHHKIDMVKDSVIRRGPRRVSFTFRK 894

[Close]

BLAST of CsGy4G025800 vs. TrEMBL
Match: tr|A0A0G4ANS6|A0A0G4ANS6_9ROSI (RNA-binding (RRM/RBD/RNP motifs) family protein OS=Pelargonium dichondrifolium OX=73194 PE=2 SV=1)

HSP 1 Score: 473.4 bits (1217), Expect = 4.3e-130
Identity = 237/332 (71.39%), Postives = 267/332 (80.42%), Query Frame = 0


Query: 1   MELPRFSRPNQD----YGSSSSSTPILYVANCGPAVGISHPAIAAVFAHFGHVKGVHPAD 60
           M LPRF RPN +      +S+ S+P L+VANCGPAVG+SH  IA+VF  FGHV+GV+PAD
Sbjct: 1   MGLPRFGRPNPNCDDTKANSTISSPNLFVANCGPAVGLSHHTIASVFGSFGHVQGVYPAD 60

Query: 61  DTGARVIVCFSEESSARAALEALHGRPCPLLGGRTLHIRYSITRPS-ISQPNDSLSVSLS 120
           DTGARVIVC+ EESSA AAL ALHGRPCP L GRTLHIRYS+ RP   S  +DS+ V LS
Sbjct: 61  DTGARVIVCYDEESSAAAALAALHGRPCPDLAGRTLHIRYSVLRPQPTSIDSDSVQVCLS 120

Query: 121 ASELDIPGLFLLHDFVNAKEEEDLLREVDARPWNNLAKRRVQHYGYEFCYQTRNVNTKHQ 180
           ASE +IPGL+L+ +FV   EE++LL  VDARPW  LAKRRVQH+GY FCYQTRNVNTK  
Sbjct: 121 ASETNIPGLYLIPNFVTPSEEQELLAAVDARPWIRLAKRRVQHHGYPFCYQTRNVNTKQH 180

Query: 181 LGELPSFVSHVVDRISMFPNTEDIADASLDQLTVNEYPPGVGLSPHIDTHSAFEGLIFSL 240
           LGELPSFV+ V++RIS FP+  D AD SLDQLTVNEYPPGVGLSPHIDTHSAFEGLIFSL
Sbjct: 181 LGELPSFVAPVLERISSFPDLNDDADLSLDQLTVNEYPPGVGLSPHIDTHSAFEGLIFSL 240

Query: 241 SLAGPCIMEFRRYPEGTWHKFP-SSIDLKMENSVNDSNYLRKAIYLPPRSMLLLSGEARY 300
           SLAGPCIMEFRRY +G W   P SS+D  ++N  N SN+ RKAIYLPPRSMLLLSGEARY
Sbjct: 241 SLAGPCIMEFRRYAQGAWFPKPGSSVDTDVDNPDNCSNFSRKAIYLPPRSMLLLSGEARY 300

Query: 301 VWHHYIPHHKIDMVKDSSIRRGRRRVSFTFRK 327
            WHHYIPHHKID V DS I+R  RRVSFT RK
Sbjct: 301 AWHHYIPHHKIDKVNDSVIKRSSRRVSFTLRK 332

The following BLAST results are available for this feature:

BLAST of CsGy4G025800 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145573.1	9.5e-190	100.00	PREDICTED: alkylated DNA repair protein alkB homolog 8 [Cucumis sativus] >KGN555...	[more]
XP_008444260.1	7.0e-177	93.87	PREDICTED: alkylated DNA repair protein alkB homolog 8 isoform X1 [Cucumis melo]	[more]
XP_022936765.1	2.3e-167	89.88	alkylated DNA repair protein alkB homolog 8 [Cucurbita moschata]	[more]
XP_023536576.1	1.1e-166	89.57	alkylated DNA repair protein alkB homolog 8 [Cucurbita pepo subsp. pepo]	[more]
XP_016899844.1	2.5e-166	93.77	PREDICTED: alkylated DNA repair protein alkB homolog 8 isoform X2 [Cucumis melo]	[more]

BLAST of CsGy4G025800 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G31600.1	1.2e-117	67.07	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G02485.1	1.7e-12	26.61	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein	[more]

BLAST of CsGy4G025800 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8RWY1\|ALKB8_ARATH	2.1e-116	67.07	Alkylated DNA repair protein ALKBH8 homolog OS=Arabidopsis thaliana OX=3702 GN=A...	[more]
sp\|Q07G10\|ALKB8_XENTR	2.8e-28	30.98	Alkylated DNA repair protein alkB homolog 8 OS=Xenopus tropicalis OX=8364 GN=alk...	[more]
sp\|Q95K79\|ALKB8_MACFA	5.0e-25	33.33	Alkylated DNA repair protein alkB homolog 8 OS=Macaca fascicularis OX=9541 GN=AL...	[more]
sp\|A1A4L5\|ALKB8_BOVIN	3.2e-24	33.33	Alkylated DNA repair protein alkB homolog 8 OS=Bos taurus OX=9913 GN=ALKBH8 PE=2...	[more]
sp\|Q96BT7\|ALKB8_HUMAN	4.2e-24	32.46	Alkylated DNA repair protein alkB homolog 8 OS=Homo sapiens OX=9606 GN=ALKBH8 PE...	[more]

BLAST of CsGy4G025800 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L3H6\|A0A0A0L3H6_CUCSA	6.3e-190	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G669210 PE=4 SV=1	[more]
tr\|A0A1S3B9H0\|A0A1S3B9H0_CUCME	4.7e-177	93.87	alkylated DNA repair protein alkB homolog 8 isoform X1 OS=Cucumis melo OX=3656 G...	[more]
tr\|A0A1S4DV33\|A0A1S4DV33_CUCME	1.7e-166	93.77	alkylated DNA repair protein alkB homolog 8 isoform X2 OS=Cucumis melo OX=3656 G...	[more]
tr\|D7TFE1\|D7TFE1_VITVI	1.5e-130	72.70	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_02s0087g00460 PE=4 SV=...	[more]
tr\|A0A0G4ANS6\|A0A0G4ANS6_9ROSI	4.3e-130	71.39	RNA-binding (RRM/RBD/RNP motifs) family protein OS=Pelargonium dichondrifolium O...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0016491	oxidoreductase activity
GO:0003676	nucleic acid binding

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	oxidation-reduction process

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR005123	Oxoglu/Fe-dep_dioxygenase
IPR000504	RRM_dom
IPR027450	AlkB-like
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR037151	AlkB-like_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0065009	regulation of molecular function
biological_process	GO:0002098	tRNA wobble uridine modification
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0005089	Rho guanyl-nucleotide exchange factor activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G025800.1	CsGy4G025800.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR037151	Alpha-ketoglutarate-dependent dioxygenase AlkB-like superfamily	GENE3D	G3DSA:2.60.120.590		coord: 121..329 e-value: 1.3E-51 score: 177.2
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 8..108 e-value: 1.1E-7 score: 33.8
IPR027450	Alpha-ketoglutarate-dependent dioxygenase AlkB-like	PFAM	PF13532	2OG-FeII_Oxy_2	coord: 157..325 e-value: 2.4E-17 score: 63.7
None	No IPR available	PANTHER	PTHR13069	UNCHARACTERIZED	coord: 17..329
None	No IPR available	PANTHER	PTHR13069:SF8	SUBFAMILY NOT NAMED	coord: 17..329
None	No IPR available	SUPERFAMILY	SSF51197	Clavaminate synthase-like	coord: 121..326
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 21..99 score: 10.036
IPR005123	Oxoglutarate/iron-dependent dioxygenase	PROSITE	PS51471	FE2OG_OXY	coord: 203..328 score: 8.799
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 7..107

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy4G025800	Cla023210	Watermelon (97103) v1	cgybwmB329
CsGy4G025800	Csa4G669210	Cucumber (Chinese Long) v2	cgybcuB166
CsGy4G025800	MELO3C010538	Melon (DHL92) v3.5.1	cgybmeB277
CsGy4G025800	CSPI04G27590	Wild cucumber (PI 183967)	cgybcpiB169
CsGy4G025800	Cp4.1LG06g05980	Cucurbita pepo (Zucchini)	cgybcpeB570
CsGy4G025800	MELO3C010538.2	Melon (DHL92) v3.6.1	cgybmedB276
CsGy4G025800	CsaV3_4G037900	Cucumber (Chinese Long) v3	cgybcucB171
CsGy4G025800	Cla97C11G222150	Watermelon (97103) v2	cgybwmbB267
CsGy4G025800	Bhi09G002352	Wax gourd	cgybwgoB398
CsGy4G025800	Carg20068	Silver-seed gourd	carcgybB1030

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy4G025800	Wax gourd	cgybwgoB397