Cp4.1LG06g05980 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG06g05980
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionRNA-binding (RRM/RBD/RNP motifs) family protein
LocationCp4.1LG06 : 3629339 .. 3631498 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TATTAAACAATAGAAAAACCAAAAGTTTATTAATCTGATAAATACTTTATATTAATGGATAATTTAGGTATTAATAGATATATACCTAAAATTTTAACTTAATTATGATTAAAAATATATATTTTTTAATTCAATAATTACAGAGTAATCCTTATTCAATTTCAAGAACAAAACAGGTGATTTGTTTATTTATTTTTAAATTTAAAATTTAAGAAAAATACTGAATAAAAAAACTTGGCTGCCGGGAACCCAAATCGCATTCACCCGCCAAACTCTTCCCCGCAAATGGACTTGCCAAGATTCGCCCGTCCAAGGGGAGATAATGGATCTTCATCTTCTAGCCCTAATCTCTACGTCGCCAACTGTGGACCGGCCGTCGGAATCAGCCACCGCGCAGTTGCGGCGGTTTTTGGCGATTTTGGGGACGTGAAAGGGGTTCACGCAGCTGACGAGACCGGCACTCGCGTCATTGTATGCTTTTCCGAAGAATCCAGCGCCCGAGCCGCTCTTGAGGCGCTACACGGCCGCCCTTGCTCTCTTCTCGGAGGCCGGACTTTGCACATACGCTATTCCATCATCAGGCCGTCCATTTCGCAGCTTAATGATTCTGTTTCAGTTTCTTTGTCGGCTTCGGAGTTGGACATTCCTGGACTTTACCTATTGCACGACTTCGTCACTGCTAAAGAAGAGGAGGTGAGCGTTTTAGTTGGATTATGAGTACTGTCAAAGGATTCGACCTTTTTTCCCCCTTTGTTTACGATTTTTCGTGCTTGTAAAGGAATTGCTTTCGGAAGTTGATGCTCGGCCTTGGAATAATCTGGCGAAACGTAGAGTTCAGCATTATGGATATGAATTTTGCTATCAAGTAAGTGGCAGAACTTTTTGCCTTTTCCTTATTCCTCCTGTCTGTTGTACTGAATGATTTTGCAACGACAGGACTCGTGATTACTGAAAATCAGTTGGTTTTGTCTCTGTTTGTTTATTGTAGACGAGAAATGTTAATACTAGACATCAGTTGGGCGAACTTCCATCATTTGTTTCTCATGTAGTTGATCGGATCTCCATGTTTCCAAACGCTGAGGATGTTGCAGATGCTGTTCTTGATCAATTGACTGTATGCACTGTGTTTTTGATGAATTACTCTAAACTTGGTTGCTTGTAGTTGCTTAATTGCTTGTGCGCAATCTTTGAACTTTGTGATTGTAGCTCTTGCTATGATATCTGAAGTCGTTGTCATGTTTAGTATGAGACTGAAATCAATATCACATTACAGGTTAATGAATACCCACCTGGGGTGGGTTTGTCTCCTCATATAGACACCCATTCTGCATTTGAAGGATTGATTTTCAGCCTTTCCTTAGCAGGGCCATGCATTATGGAGTTTAGGAGGTATACCGAAGGCGCTTGGCACAAATGCCCTTCAAATATAGATTTGAAAATGGAGAATTCAGTAAACGACTCAAATTATCTGAGGAAAGCCATTTATCTTCCTCCTCGGTCGATGCTCCTACTGTCTGGAGAGGCACGTTACGCTTGGCATCATTACATTCCTCACCACAAGGTATATCAGATCGTCCATGAACAATTGCTGTTTTAGTGCGGTCGATTTACGAAATCTGTAGAGTTATCTGTTTATACATGTTAACAGCTATGAAGGGGTCGAGTAGTTTATTTTCAAATAGTTGGACCAATGGTTGAGGATGAGTTACACATTTGGATTTCTTTGTAGTACTTTGATAGTTATCTACAAAGATTATAGTCTTGTTTATTTCAAATGTTGTAGAGGTTTAAATTGTGTTCTTGTTGGATAGATTAAGTGAGGGTAAATCAGGCTAGATACCATGGGTGTAAGCACGATTATGTGTCGAATAACATTATCACTTAGCTATTGAATGAAAGAAACTGTGAACTTATACATTCTATTCTCATTTATGAAGTTGAAATTGTGTAAATGTTCTGTAATAGATTGACATGGTGAAGGACAGTGCAATCAGAAGGGGTCCTAGGAGGGTTTCTTTTACGTTTCGCAAGGTGAGTAGATTTAATGCTTATGTTCTTTCCGTTCGTCTCGTACATGATGAGCCTTACTTACCTGCATCTATTATTCATGATGTCAAGATGGCAGTTATCCTGCCTCATGGCAATTCTAAAGCTTTATAA

mRNA sequence

TATTAAACAATAGAAAAACCAAAAGTTTATTAATCTGATAAATACTTTATATTAATGGATAATTTAGGTATTAATAGATATATACCTAAAATTTTAACTTAATTATGATTAAAAATATATATTTTTTAATTCAATAATTACAGAGTAATCCTTATTCAATTTCAAGAACAAAACAGGTGATTTGTTTATTTATTTTTAAATTTAAAATTTAAGAAAAATACTGAATAAAAAAACTTGGCTGCCGGGAACCCAAATCGCATTCACCCGCCAAACTCTTCCCCGCAAATGGACTTGCCAAGATTCGCCCGTCCAAGGGGAGATAATGGATCTTCATCTTCTAGCCCTAATCTCTACGTCGCCAACTGTGGACCGGCCGTCGGAATCAGCCACCGCGCAGTTGCGGCGGTTTTTGGCGATTTTGGGGACGTGAAAGGGGTTCACGCAGCTGACGAGACCGGCACTCGCGTCATTGTATGCTTTTCCGAAGAATCCAGCGCCCGAGCCGCTCTTGAGGCGCTACACGGCCGCCCTTGCTCTCTTCTCGGAGGCCGGACTTTGCACATACGCTATTCCATCATCAGGCCGTCCATTTCGCAGCTTAATGATTCTGTTTCAGTTTCTTTGTCGGCTTCGGAGTTGGACATTCCTGGACTTTACCTATTGCACGACTTCGTCACTGCTAAAGAAGAGGAGGAATTGCTTTCGGAAGTTGATGCTCGGCCTTGGAATAATCTGGCGAAACGTAGAGTTCAGCATTATGGATATGAATTTTGCTATCAAACGAGAAATGTTAATACTAGACATCAGTTGGGCGAACTTCCATCATTTGTTTCTCATGTAGTTGATCGGATCTCCATGTTTCCAAACGCTGAGGATGTTGCAGATGCTGTTCTTGATCAATTGACTGTTAATGAATACCCACCTGGGGTGGGTTTGTCTCCTCATATAGACACCCATTCTGCATTTGAAGGATTGATTTTCAGCCTTTCCTTAGCAGGGCCATGCATTATGGAGTTTAGGAGGTATACCGAAGGCGCTTGGCACAAATGCCCTTCAAATATAGATTTGAAAATGGAGAATTCAGTAAACGACTCAAATTATCTGAGGAAAGCCATTTATCTTCCTCCTCGGTCGATGCTCCTACTGTCTGGAGAGGCACGTTACGCTTGGCATCATTACATTCCTCACCACAAGATTGACATGGTGAAGGACAGTGCAATCAGAAGGGGTCCTAGGAGGGTTTCTTTTACGTTTCGCAAGGTGAGTAGATTTAATGCTTATGTTCTTTCCGTTCGTCTCGTACATGATGAGCCTTACTTACCTGCATCTATTATTCATGATGTCAAGATGGCAGTTATCCTGCCTCATGGCAATTCTAAAGCTTTATAA

Coding sequence (CDS)

ATGGACTTGCCAAGATTCGCCCGTCCAAGGGGAGATAATGGATCTTCATCTTCTAGCCCTAATCTCTACGTCGCCAACTGTGGACCGGCCGTCGGAATCAGCCACCGCGCAGTTGCGGCGGTTTTTGGCGATTTTGGGGACGTGAAAGGGGTTCACGCAGCTGACGAGACCGGCACTCGCGTCATTGTATGCTTTTCCGAAGAATCCAGCGCCCGAGCCGCTCTTGAGGCGCTACACGGCCGCCCTTGCTCTCTTCTCGGAGGCCGGACTTTGCACATACGCTATTCCATCATCAGGCCGTCCATTTCGCAGCTTAATGATTCTGTTTCAGTTTCTTTGTCGGCTTCGGAGTTGGACATTCCTGGACTTTACCTATTGCACGACTTCGTCACTGCTAAAGAAGAGGAGGAATTGCTTTCGGAAGTTGATGCTCGGCCTTGGAATAATCTGGCGAAACGTAGAGTTCAGCATTATGGATATGAATTTTGCTATCAAACGAGAAATGTTAATACTAGACATCAGTTGGGCGAACTTCCATCATTTGTTTCTCATGTAGTTGATCGGATCTCCATGTTTCCAAACGCTGAGGATGTTGCAGATGCTGTTCTTGATCAATTGACTGTTAATGAATACCCACCTGGGGTGGGTTTGTCTCCTCATATAGACACCCATTCTGCATTTGAAGGATTGATTTTCAGCCTTTCCTTAGCAGGGCCATGCATTATGGAGTTTAGGAGGTATACCGAAGGCGCTTGGCACAAATGCCCTTCAAATATAGATTTGAAAATGGAGAATTCAGTAAACGACTCAAATTATCTGAGGAAAGCCATTTATCTTCCTCCTCGGTCGATGCTCCTACTGTCTGGAGAGGCACGTTACGCTTGGCATCATTACATTCCTCACCACAAGATTGACATGGTGAAGGACAGTGCAATCAGAAGGGGTCCTAGGAGGGTTTCTTTTACGTTTCGCAAGGTGAGTAGATTTAATGCTTATGTTCTTTCCGTTCGTCTCGTACATGATGAGCCTTACTTACCTGCATCTATTATTCATGATGTCAAGATGGCAGTTATCCTGCCTCATGGCAATTCTAAAGCTTTATAA

Protein sequence

MDLPRFARPRGDNGSSSSSPNLYVANCGPAVGISHRAVAAVFGDFGDVKGVHAADETGTRVIVCFSEESSARAALEALHGRPCSLLGGRTLHIRYSIIRPSISQLNDSVSVSLSASELDIPGLYLLHDFVTAKEEEELLSEVDARPWNNLAKRRVQHYGYEFCYQTRNVNTRHQLGELPSFVSHVVDRISMFPNAEDVADAVLDQLTVNEYPPGVGLSPHIDTHSAFEGLIFSLSLAGPCIMEFRRYTEGAWHKCPSNIDLKMENSVNDSNYLRKAIYLPPRSMLLLSGEARYAWHHYIPHHKIDMVKDSAIRRGPRRVSFTFRKVSRFNAYVLSVRLVHDEPYLPASIIHDVKMAVILPHGNSKAL
Homology
[Close]
BLAST of Cp4.1LG06g05980 vs. Swiss-Prot
Match: ALKB8_XENTR (Alkylated DNA repair protein alkB homolog 8 OS=Xenopus tropicalis GN=alkbh8 PE=2 SV=2)

HSP 1 Score: 125.2 bits (313), Expect = 1.5e-27
Identity = 99/329 (30.09%), Postives = 148/329 (44.98%), Query Frame = 1 

Query: 19  SPNLYVANCGPAVGISHRAVAAVFGDFGDVKGVHAADETGTRVIVCFSEESSARAALEAL 78
           S +L VAN G   G+S + + AV    G V+ +           V +S    A  A  +L
Sbjct: 42  SQSLVVANGGLGNGVSRQQLLAVLERCGKVETL-LMPPNKPYAFVTYSSAEEAIKAYSSL 101

Query: 79  HGRP-CSLLGGRTLHIRYSIIRPSISQLNDSVSVSLSASELDIPGLYLLHDFVTAKEEEE 138
            G+  C     + + +  S +   +  + + +S SL       PGL ++ DFV+ ++E  
Sbjct: 102 SGQELCGEDAEQPITLYLSFVEKVV--VKEVLSPSLP------PGLIIVEDFVSPEQERT 161

Query: 139 LLSEVD----ARPWNNLAKRRVQHYGYEFCYQTRNVNTRHQL-GELPSFVSHVVDRISMF 198
           +L  +D         +L  R+V+HYGYEF Y   NV+    L G LP F +  + +    
Sbjct: 162 MLESIDWDSETSSQKSLKHRQVKHYGYEFRYDNNNVDKDKPLPGGLPDFCTEALRKCVQ- 221

Query: 199 PNAEDVADAVLDQLTVNEYPPGVGLSPHIDTHSAFEGLIFSLSLAGPCIMEFRRYTEGAW 258
                +     DQLT+N+Y PG G+ PH+DTHSAFE  I SLSL    +M+F+       
Sbjct: 222 ---RGLIKHDPDQLTINQYEPGQGIPPHVDTHSAFEDEILSLSLGAEIVMDFKH------ 281

Query: 259 HKCPSNIDLKMENSVNDSNYLRKAIYLPPRSMLLLSGEARYAWHHYIPHHKIDMVKDS-- 318
                             N     + LP RS+L++SGE+RY W H I   K D+++ S  
Sbjct: 282 -----------------PNGSVVPVMLPQRSLLIMSGESRYLWTHGITPRKFDVIQVSEG 334

Query: 319 -------------AIRRGPRRVSFTFRKV 327
                         + +   R SFTFRKV
Sbjct: 342 QTVGTISGNSGELTLSKRSTRTSFTFRKV 334

[Close]
BLAST of Cp4.1LG06g05980 vs. Swiss-Prot
Match: ALKB8_MOUSE (Alkylated DNA repair protein alkB homolog 8 OS=Mus musculus GN=Alkbh8 PE=1 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 4.1e-25
Identity = 78/234 (33.33%), Postives = 116/234 (49.57%), Query Frame = 1 

Query: 121 PGLYLLHDFVTAKEEEELLSEVDARPWN----------NLAKRRVQHYGYEFCYQTRNVN 180
           PGL ++ + ++++EE++LL  V+   W           +L  RRV+H+GYEF Y++  V+
Sbjct: 135 PGLLVVEEIISSEEEKKLLESVN---WTEDTGNQNFQRSLKHRRVKHFGYEFHYESNTVD 194

Query: 181 TRHQL-GELPSFVSHVVDRISMFPNAEDVADAVLDQLTVNEYPPGVGLSPHIDTHSAFEG 240
               L G LP   S +++++      E       DQLT+N+Y PG G+  HIDTHSAFE 
Sbjct: 195 KDKPLPGGLPEVCSSILEKLLK----EGYIKHKPDQLTINQYEPGHGIPAHIDTHSAFED 254

Query: 241 LIFSLSLAGPCIMEFRRYTEGAWHKCPSNIDLKMENSVNDSNYLRKAIYLPPRSMLLLSG 300
            I SLSL    +M+F         K P  + ++              + LP RS+L+++G
Sbjct: 255 EIISLSLGSAIVMDF---------KHPEGVTVQ--------------VMLPRRSLLVMTG 314

Query: 301 EARYAWHHYIPHHKIDMVK---------------DSAIRRGPRRVSFTFRKVSR 329
           E+RY W H I   K D V+               D  + +   R SFTFRKV R
Sbjct: 315 ESRYLWTHGITPRKFDTVQASEQFKGGIITSDIGDLTLSKRGMRTSFTFRKVRR 338

[Close]
BLAST of Cp4.1LG06g05980 vs. Swiss-Prot
Match: ALKB8_MACFA (Alkylated DNA repair protein alkB homolog 8 OS=Macaca fascicularis GN=ALKBH8 PE=2 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.3e-23
Identity = 75/229 (32.75%), Postives = 109/229 (47.60%), Query Frame = 1 

Query: 121 PGLYLLHDFVTAKEEEELLSEVD-------ARPWNNLAKRRVQHYGYEFCYQTRNVNTRH 180
           PGL ++ + ++++EE+ LL  VD            +L  RRV+H+GYEF Y+  NV+   
Sbjct: 135 PGLMVVEEIISSEEEKMLLESVDWTEDTDNQNSQKSLKHRRVKHFGYEFHYENNNVDKDK 194

Query: 181 QL-GELPSFVSHVVDRISMFPNAEDVADAVLDQLTVNEYPPGVGLSPHIDTHSAFEGLIF 240
            L G LP      +++       E       DQ+T+N+Y PG G+  HIDTHSAFE  I 
Sbjct: 195 PLPGGLPDICDSFLEKWLR----EGYIKHKPDQMTINQYEPGQGIPAHIDTHSAFEDEIV 254

Query: 241 SLSLAGPCIMEFRRYTEGAWHKCPSNIDLKMENSVNDSNYLRKAIYLPPRSMLLLSGEAR 300
           SLSL    +M+F ++ +G                          + LP RS+L+++GE+R
Sbjct: 255 SLSLGSEIVMDF-KHPDGT----------------------AVPVMLPRRSLLVMTGESR 314

Query: 301 YAWHHYIPHHKIDMVK---------------DSAIRRGPRRVSFTFRKV 327
           Y W H I   K D V+               D  + +   R SFTFRKV
Sbjct: 315 YLWTHGITCRKFDTVQASENHKSGIITSDVGDLTLSKRGLRTSFTFRKV 336

[Close]
BLAST of Cp4.1LG06g05980 vs. Swiss-Prot
Match: ALKB8_BOVIN (Alkylated DNA repair protein alkB homolog 8 OS=Bos taurus GN=ALKBH8 PE=2 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.9e-23
Identity = 76/229 (33.19%), Postives = 112/229 (48.91%), Query Frame = 1 

Query: 121 PGLYLLHDFVTAKEEEELLSEV----DARPWN---NLAKRRVQHYGYEFCYQTRNVNTRH 180
           PGL ++ + +++++E+ LL  V    D    N   +L  RRV+H+GYEF Y+  NV+   
Sbjct: 135 PGLKVIEEIISSEDEKMLLESVNWTEDTENQNFQKSLKHRRVKHFGYEFHYENNNVDKDK 194

Query: 181 QL-GELPSFVSHVVDRISMFPNAEDVADAVLDQLTVNEYPPGVGLSPHIDTHSAFEGLIF 240
            L G LP     ++++       E       DQLT+N+Y PG G+  HIDTHSAFE  I 
Sbjct: 195 PLPGGLPDICESILEKWLK----EGFIKHKPDQLTINQYEPGHGIPAHIDTHSAFEDEII 254

Query: 241 SLSLAGPCIMEFRRYTEGAWHKCPSNIDLKMENSVNDSNYLRKAIYLPPRSMLLLSGEAR 300
           SLSL    +M+F ++ +G                      +   + LP RS+L+++GE+R
Sbjct: 255 SLSLGSEIVMDF-KHPDG----------------------MTVPVMLPCRSLLVMTGESR 314

Query: 301 YAWHHYIPHHKIDM---------------VKDSAIRRGPRRVSFTFRKV 327
           Y W H I   K D                V+D  + +   R SFTFRKV
Sbjct: 315 YLWTHGITPRKFDTVQASKGHKSGIITSDVEDLTLNKRGIRTSFTFRKV 336

[Close]
BLAST of Cp4.1LG06g05980 vs. Swiss-Prot
Match: ALKB8_HUMAN (Alkylated DNA repair protein alkB homolog 8 OS=Homo sapiens GN=ALKBH8 PE=1 SV=2)

HSP 1 Score: 110.9 bits (276), Expect = 2.9e-23
Identity = 76/229 (33.19%), Postives = 109/229 (47.60%), Query Frame = 1 

Query: 121 PGLYLLHDFVTAKEEEELLSEVD-------ARPWNNLAKRRVQHYGYEFCYQTRNVNTRH 180
           PGL ++ + ++++EE+ LL  VD            +L  RRV+H+GYEF Y+  NV+   
Sbjct: 135 PGLMVVEEIISSEEEKMLLESVDWTEDTDNQNSQKSLKHRRVKHFGYEFHYENNNVDKDK 194

Query: 181 QL-GELPSFVSHVVDRISMFPNAEDVADAVLDQLTVNEYPPGVGLSPHIDTHSAFEGLIF 240
            L G LP      +++       +       DQ+T+N+Y PG G+  HIDTHSAFE  I 
Sbjct: 195 PLSGGLPDICESFLEKWLR----KGYIKHKPDQMTINQYEPGQGIPAHIDTHSAFEDEIV 254

Query: 241 SLSLAGPCIMEFRRYTEGAWHKCPSNIDLKMENSVNDSNYLRKAIYLPPRSMLLLSGEAR 300
           SLSL    +M+F         K P  I +               + LP RS+L+++GE+R
Sbjct: 255 SLSLGSEIVMDF---------KHPDGIAV--------------PVMLPRRSLLVMTGESR 314

Query: 301 YAWHHYIPHHKIDMVK---------------DSAIRRGPRRVSFTFRKV 327
           Y W H I   K D V+               D  + +   R SFTFRKV
Sbjct: 315 YLWTHGITCRKFDTVQASESLKSGIITSDVGDLTLSKRGLRTSFTFRKV 336

[Close]
BLAST of Cp4.1LG06g05980 vs. TrEMBL
Match: A0A0A0L3H6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G669210 PE=4 SV=1)

HSP 1 Score: 596.3 bits (1536), Expect = 2.6e-167
Identity = 293/327 (89.60%), Postives = 304/327 (92.97%), Query Frame = 1 

Query: 1   MDLPRFARPRGDNGSSSSS-PNLYVANCGPAVGISHRAVAAVFGDFGDVKGVHAADETGT 60
           M+LPRF+RP  D GSSSSS P LYVANCGPAVGISH A+AAVF  FG VKGVH AD+TG 
Sbjct: 1   MELPRFSRPNQDYGSSSSSTPILYVANCGPAVGISHPAIAAVFAHFGHVKGVHPADDTGA 60

Query: 61  RVIVCFSEESSARAALEALHGRPCSLLGGRTLHIRYSIIRPSISQLNDSVSVSLSASELD 120
           RVIVCFSEESSARAALEALHGRPC LLGGRTLHIRYSI RPSISQ NDS+SVSLSASELD
Sbjct: 61  RVIVCFSEESSARAALEALHGRPCPLLGGRTLHIRYSITRPSISQPNDSLSVSLSASELD 120

Query: 121 IPGLYLLHDFVTAKEEEELLSEVDARPWNNLAKRRVQHYGYEFCYQTRNVNTRHQLGELP 180
           IPGL+LLHDFV AKEEE+LL EVDARPWNNLAKRRVQHYGYEFCYQTRNVNT+HQLGELP
Sbjct: 121 IPGLFLLHDFVNAKEEEDLLREVDARPWNNLAKRRVQHYGYEFCYQTRNVNTKHQLGELP 180

Query: 181 SFVSHVVDRISMFPNAEDVADAVLDQLTVNEYPPGVGLSPHIDTHSAFEGLIFSLSLAGP 240
           SFVSHVVDRISMFPN ED+ADA LDQLTVNEYPPGVGLSPHIDTHSAFEGLIFSLSLAGP
Sbjct: 181 SFVSHVVDRISMFPNTEDIADASLDQLTVNEYPPGVGLSPHIDTHSAFEGLIFSLSLAGP 240

Query: 241 CIMEFRRYTEGAWHKCPSNIDLKMENSVNDSNYLRKAIYLPPRSMLLLSGEARYAWHHYI 300
           CIMEFRRY EG WHK PS+IDLKMENSVNDSNYLRKAIYLPPRSMLLLSGEARY WHHYI
Sbjct: 241 CIMEFRRYPEGTWHKFPSSIDLKMENSVNDSNYLRKAIYLPPRSMLLLSGEARYVWHHYI 300

Query: 301 PHHKIDMVKDSAIRRGPRRVSFTFRKV 327
           PHHKIDMVKDS+IRRG RRVSFTFRKV
Sbjct: 301 PHHKIDMVKDSSIRRGRRRVSFTFRKV 327

[Close]
BLAST of Cp4.1LG06g05980 vs. TrEMBL
Match: D7TFE1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0087g00460 PE=4 SV=1)

HSP 1 Score: 489.6 bits (1259), Expect = 3.4e-135
Identity = 240/326 (73.62%), Postives = 274/326 (84.05%), Query Frame = 1 

Query: 1   MDLPRFARPRGDNGSSSSSPNLYVANCGPAVGISHRAVAAVFGDFGDVKGVHAADETGTR 60
           M LPRF+RP+G +G  S  PNLYVANCGPAVG+S   +A+VF  FG+VKGV+ AD++G R
Sbjct: 573 MGLPRFSRPKGVDGELS--PNLYVANCGPAVGLSFDTIASVFSTFGEVKGVYPADDSGAR 632

Query: 61  VIVCFSEESSARAALEALHGRPCSLLGGRTLHIRYSIIRPSISQLNDSVSVSLSASELDI 120
           VIV + EES+A+AAL+AL G PC  LGGR LHIRYSI +P  SQ+NDSV VSL  SEL+I
Sbjct: 633 VIVSYFEESAAQAALKALDGHPCPALGGRFLHIRYSIFQPP-SQVNDSVPVSLVDSELNI 692

Query: 121 PGLYLLHDFVTAKEEEELLSEVDARPWNNLAKRRVQHYGYEFCYQTRNVNTRHQLGELPS 180
           PG+YLLHDFV+AKEEEELL+ VD   W +L+KRRVQHYGYEFCY+TRNVNT+  LG+LPS
Sbjct: 693 PGIYLLHDFVSAKEEEELLAAVDKMSWKSLSKRRVQHYGYEFCYETRNVNTKQYLGKLPS 752

Query: 181 FVSHVVDRISMFPNAEDVADAVLDQLTVNEYPPGVGLSPHIDTHSAFEGLIFSLSLAGPC 240
           FVS +V+RIS FPN E  AD VLDQLTVNEYPPGVGLSPHIDTHSAFEG IFSLSLAGPC
Sbjct: 753 FVSAIVERISSFPNLESAADIVLDQLTVNEYPPGVGLSPHIDTHSAFEGFIFSLSLAGPC 812

Query: 241 IMEFRRYTEGAWHKCPSNIDLKMENSVNDSNYLRKAIYLPPRSMLLLSGEARYAWHHYIP 300
           IM+FRRYTEG W K  S+ D+ +E     S++LR+AIYLPPRSMLLLSGEARYAWHHYIP
Sbjct: 813 IMDFRRYTEGVWPKSASSSDMSVEYPDKSSSFLRRAIYLPPRSMLLLSGEARYAWHHYIP 872

Query: 301 HHKIDMVKDSAIRRGPRRVSFTFRKV 327
           HHKIDMVKDS IRRGPRRVSFTFRKV
Sbjct: 873 HHKIDMVKDSVIRRGPRRVSFTFRKV 895

[Close]
BLAST of Cp4.1LG06g05980 vs. TrEMBL
Match: A0A0G4AM79_9ROSI (RNA-binding (RRM/RBD/RNP motifs) family protein OS=Pelargonium transvaalense PE=2 SV=1)

HSP 1 Score: 477.6 bits (1228), Expect = 1.3e-131
Identity = 237/333 (71.17%), Postives = 272/333 (81.68%), Query Frame = 1 

Query: 1   MDLPRFARPR--GDNGSSS---SSPNLYVANCGPAVGISHRAVAAVFGDFGDVKGVHAAD 60
           M LPRF RP   GD+ +S+   SSPNL+VANCGPAVG+SH  +A+VFG FGDV+GV+ AD
Sbjct: 1   MGLPRFGRPNPNGDDTNSNPIVSSPNLFVANCGPAVGLSHHTIASVFGSFGDVRGVYPAD 60

Query: 61  ETGTRVIVCFSEESSARAALEALHGRPCSLLGGRTLHIRYSIIRPSISQLN-DSVSVSLS 120
           +TG RVIVC+ EES A AAL +LHGRPC  L GRTLHIRYS++RP  + ++ DSV V LS
Sbjct: 61  DTGARVIVCYDEESCAAAALASLHGRPCPDLAGRTLHIRYSVLRPQPTSIDSDSVQVCLS 120

Query: 121 ASELDIPGLYLLHDFVTAKEEEELLSEVDARPWNNLAKRRVQHYGYEFCYQTRNVNTRHQ 180
           ASE DIPGLYL+ +FVT  EE+ELL+ VDARPW  LAKRRVQH+GY FCYQTRNVNT+  
Sbjct: 121 ASETDIPGLYLIPNFVTLNEEQELLAAVDARPWIRLAKRRVQHHGYPFCYQTRNVNTKQH 180

Query: 181 LGELPSFVSHVVDRISMFPNAEDVADAVLDQLTVNEYPPGVGLSPHIDTHSAFEGLIFSL 240
           LGELPSFV+ V++RIS FP+  D AD  LDQLTVNEYPPGVGLSPHIDTHSAFEGLIFSL
Sbjct: 181 LGELPSFVAPVLERISSFPDLNDAADLSLDQLTVNEYPPGVGLSPHIDTHSAFEGLIFSL 240

Query: 241 SLAGPCIMEFRRYTEGAWHKCP-SNIDLKMENSVNDSNYLRKAIYLPPRSMLLLSGEARY 300
           SLAGPCIMEFRRY +GAW   P S++D  ++N  N SN+ RKAI+LPPRSMLLLSGEARY
Sbjct: 241 SLAGPCIMEFRRYAQGAWFPKPGSSVDTDVDNPDNCSNFSRKAIFLPPRSMLLLSGEARY 300

Query: 301 AWHHYIPHHKIDMVKDSAIRRGPRRVSFTFRKV 327
           AWHHYIPHHKID V DS I+R  RRVSFT RKV
Sbjct: 301 AWHHYIPHHKIDKVNDSVIKRSSRRVSFTLRKV 333

[Close]
BLAST of Cp4.1LG06g05980 vs. TrEMBL
Match: A0A0G4ANS6_9ROSI (RNA-binding (RRM/RBD/RNP motifs) family protein OS=Pelargonium dichondrifolium PE=2 SV=1)

HSP 1 Score: 473.8 bits (1218), Expect = 1.9e-130
Identity = 236/333 (70.87%), Postives = 269/333 (80.78%), Query Frame = 1 

Query: 1   MDLPRFARPRGD-----NGSSSSSPNLYVANCGPAVGISHRAVAAVFGDFGDVKGVHAAD 60
           M LPRF RP  +       S+ SSPNL+VANCGPAVG+SH  +A+VFG FG V+GV+ AD
Sbjct: 1   MGLPRFGRPNPNCDDTKANSTISSPNLFVANCGPAVGLSHHTIASVFGSFGHVQGVYPAD 60

Query: 61  ETGTRVIVCFSEESSARAALEALHGRPCSLLGGRTLHIRYSIIRPSISQLN-DSVSVSLS 120
           +TG RVIVC+ EESSA AAL ALHGRPC  L GRTLHIRYS++RP  + ++ DSV V LS
Sbjct: 61  DTGARVIVCYDEESSAAAALAALHGRPCPDLAGRTLHIRYSVLRPQPTSIDSDSVQVCLS 120

Query: 121 ASELDIPGLYLLHDFVTAKEEEELLSEVDARPWNNLAKRRVQHYGYEFCYQTRNVNTRHQ 180
           ASE +IPGLYL+ +FVT  EE+ELL+ VDARPW  LAKRRVQH+GY FCYQTRNVNT+  
Sbjct: 121 ASETNIPGLYLIPNFVTPSEEQELLAAVDARPWIRLAKRRVQHHGYPFCYQTRNVNTKQH 180

Query: 181 LGELPSFVSHVVDRISMFPNAEDVADAVLDQLTVNEYPPGVGLSPHIDTHSAFEGLIFSL 240
           LGELPSFV+ V++RIS FP+  D AD  LDQLTVNEYPPGVGLSPHIDTHSAFEGLIFSL
Sbjct: 181 LGELPSFVAPVLERISSFPDLNDDADLSLDQLTVNEYPPGVGLSPHIDTHSAFEGLIFSL 240

Query: 241 SLAGPCIMEFRRYTEGAWHKCP-SNIDLKMENSVNDSNYLRKAIYLPPRSMLLLSGEARY 300
           SLAGPCIMEFRRY +GAW   P S++D  ++N  N SN+ RKAIYLPPRSMLLLSGEARY
Sbjct: 241 SLAGPCIMEFRRYAQGAWFPKPGSSVDTDVDNPDNCSNFSRKAIYLPPRSMLLLSGEARY 300

Query: 301 AWHHYIPHHKIDMVKDSAIRRGPRRVSFTFRKV 327
           AWHHYIPHHKID V DS I+R  RRVSFT RKV
Sbjct: 301 AWHHYIPHHKIDKVNDSVIKRSSRRVSFTLRKV 333

[Close]
BLAST of Cp4.1LG06g05980 vs. TrEMBL
Match: M5WGJ1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008098mg PE=4 SV=1)

HSP 1 Score: 473.0 bits (1216), Expect = 3.3e-130
Identity = 231/330 (70.00%), Postives = 275/330 (83.33%), Query Frame = 1 

Query: 1   MDLPRFARPRGDNGSSSSSPNLYVANCGPAVGISHRAVAAVFGDFGDVKGVHAADETGTR 60
           M   RF RP+G  G SS  PNLYVANCGPAVG+S+  + +VF  FG++KGV+AADE+G R
Sbjct: 1   MGFTRFGRPKGAQGQSS--PNLYVANCGPAVGLSYDTIVSVFRAFGEIKGVYAADESGAR 60

Query: 61  VIVCFSEESSARAALEALHGRPCSLLGGRTLHIRYSIIRP---SISQLNDSVSVSLSASE 120
           V+VCF+EE  A+ A  AL+GRPC+ LGGR+LHIRYS+++P   S  ++NDSV VSL ASE
Sbjct: 61  VVVCFAEEGCAQNAFNALNGRPCAELGGRSLHIRYSVLQPTSQSQGRVNDSVPVSLLASE 120

Query: 121 LDIPGLYLLHDFVTAKEEEELLSEVDARPWNNLAKRRVQHYGYEFCYQTRNVNTRHQLGE 180
           L+IPGL+L+HDFVTAKEEEE L+ VD RPW NL+KRRVQHYGYEFCY+TRNV++R  LGE
Sbjct: 121 LNIPGLFLMHDFVTAKEEEEFLAAVDERPWKNLSKRRVQHYGYEFCYETRNVDSRKNLGE 180

Query: 181 LPSFVSHVVDRISMFPNAEDVADAVLDQLTVNEYPPGVGLSPHIDTHSAFEGLIFSLSLA 240
           LP+FVS ++ RI++ P  ED    VLDQLTVNEYPPGVGLSPHIDTHSAFEGLIFSLSLA
Sbjct: 181 LPAFVSPILKRIALLPMREDAEAIVLDQLTVNEYPPGVGLSPHIDTHSAFEGLIFSLSLA 240

Query: 241 GPCIMEFRRY-TEGAWHKCPSNIDLKMENSVNDSNYLRKAIYLPPRSMLLLSGEARYAWH 300
           GPCIMEFRRY  EG   +  S+ D+++E+S N+SN+LR+AIYLPPRS+LLLSGEARYAW+
Sbjct: 241 GPCIMEFRRYLDEGLTPRASSSSDIEIESSENNSNFLRRAIYLPPRSLLLLSGEARYAWN 300

Query: 301 HYIPHHKIDMVKDSAIRRGPRRVSFTFRKV 327
           HYIPHHKIDMVKDS IRR  RRVSFTFRKV
Sbjct: 301 HYIPHHKIDMVKDSVIRRASRRVSFTFRKV 328

[Close]
BLAST of Cp4.1LG06g05980 vs. TAIR10
Match: AT1G31600.1 (AT1G31600.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 423.3 bits (1087), Expect = 1.5e-118
Identity = 217/329 (65.96%), Postives = 258/329 (78.42%), Query Frame = 1 

Query: 4   PRFARPRGDNGSSSS----SPNLYVANCGPAVGISHRAVAAVFGDFGDVKGVHAADETGT 63
           PRF RP   + SS S    S NLYVANCGPAVG++H A+AAVF +FG+V GV+AAD++G 
Sbjct: 89  PRFVRPTQSSPSSISGEPNSSNLYVANCGPAVGLTHNAIAAVFAEFGEVNGVYAADDSGV 148

Query: 64  RVIVCFSEESSARAALEALHGRPCSLLGGRTLHIRYSIIR-PSISQLNDSVSVSLSASEL 123
           RVIV F++  SA+AALEAL GRPC  L GR+LHIRYS+++ PS +Q+ND V VSL  SEL
Sbjct: 149 RVIVSFADPFSAKAALEALSGRPCPDLKGRSLHIRYSVLQLPSETQVNDCVPVSLIDSEL 208

Query: 124 DIPGLYLLHDFVTAKEEEELLSEVDARPWNNLAKRRVQHYGYEFCYQTRNVNTRHQLGEL 183
           +IPGL+LL DFVT  EE++LL+ VDAR W  LAKRRVQHYGYEFCY TRNV+T+ +LGEL
Sbjct: 209 NIPGLFLLPDFVTVAEEQQLLAAVDARHWIGLAKRRVQHYGYEFCYGTRNVDTKKRLGEL 268

Query: 184 PSFVSHVVDRISMFPNAED-VADAVLDQLTVNEYPPGVGLSPHIDTHSAFEGLIFSLSLA 243
           PSFVS +++RI +FPN ++  A   LDQLTVNEYP GVGLSPHIDTHSAFE  IFSLSLA
Sbjct: 269 PSFVSPILERIYLFPNFDNGSASLNLDQLTVNEYPSGVGLSPHIDTHSAFEDCIFSLSLA 328

Query: 244 GPCIMEFRRYTEGAWHKCPSNIDLKMENSVNDSNYLRKAIYLPPRSMLLLSGEARYAWHH 303
           GPCIMEFRRY+   W    ++ +        DS+ ++KA+YLPPRSMLLLSGEARYAW+H
Sbjct: 329 GPCIMEFRRYSVSTWKASTTDAE-----KSGDSSCIKKALYLPPRSMLLLSGEARYAWNH 388

Query: 304 YIPHHKIDMVKDSAIRRGPRRVSFTFRKV 327
           YIPHHKID VKD  IRR  RRVSFT RKV
Sbjct: 389 YIPHHKIDKVKDKVIRRSSRRVSFTLRKV 412

[Close]
BLAST of Cp4.1LG06g05980 vs. TAIR10
Match: AT4G02485.1 (AT4G02485.1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein)

HSP 1 Score: 73.6 bits (179), Expect = 2.9e-13
Identity = 58/219 (26.48%), Postives = 93/219 (42.47%), Query Frame = 1 

Query: 119 DIPGLYLLHDFVTAKEEEELLSEVDARPWNNLAKRRVQHYGYEFCYQTRNVNTRHQLGEL 178
           +I GL+L  +F++   +  LLS +    W                +   ++N   + G+L
Sbjct: 43  EINGLWLYRNFLSIAHQSHLLSAILNEGW----------------FVEESINQAMRFGDL 102

Query: 179 PSFVSHVVDRISMFPNAEDVA---------DAVLDQLTVNEYPPGVGLSPHIDTHSAFEG 238
           PS+ + + D I     + D+          + + DQL VN Y PG G+  H+D    FE 
Sbjct: 103 PSWATELSDLIRETLESVDLPVLSADLLWREPLFDQLIVNLYQPGEGICAHVDL-LRFED 162

Query: 239 LIFSLSLAGPCIMEFRRYTEGAWHKCPSNIDLKMENSVNDSNYLRKAIYLPPRSMLLLSG 298
            I  +SL  PC+M F                    +    + Y    + L P S++L+SG
Sbjct: 163 GIAIVSLESPCVMRF--------------------SPAEKNEYEAVDVLLNPGSLILMSG 222

Query: 299 EARYAWHHYI--PHHKIDMVKDSAIRRGPRRVSFTFRKV 327
           EARY W H I    +   + +   I +  RR+S T RK+
Sbjct: 223 EARYRWKHEINRKQNGFQLWEGEEIDQ-KRRISITLRKL 223

[Close]
BLAST of Cp4.1LG06g05980 vs. NCBI nr
Match: gi|449455667|ref|XP_004145573.1| (PREDICTED: alkylated DNA repair protein alkB homolog 8 [Cucumis sativus])

HSP 1 Score: 596.3 bits (1536), Expect = 3.7e-167
Identity = 293/327 (89.60%), Postives = 304/327 (92.97%), Query Frame = 1 

Query: 1   MDLPRFARPRGDNGSSSSS-PNLYVANCGPAVGISHRAVAAVFGDFGDVKGVHAADETGT 60
           M+LPRF+RP  D GSSSSS P LYVANCGPAVGISH A+AAVF  FG VKGVH AD+TG 
Sbjct: 1   MELPRFSRPNQDYGSSSSSTPILYVANCGPAVGISHPAIAAVFAHFGHVKGVHPADDTGA 60

Query: 61  RVIVCFSEESSARAALEALHGRPCSLLGGRTLHIRYSIIRPSISQLNDSVSVSLSASELD 120
           RVIVCFSEESSARAALEALHGRPC LLGGRTLHIRYSI RPSISQ NDS+SVSLSASELD
Sbjct: 61  RVIVCFSEESSARAALEALHGRPCPLLGGRTLHIRYSITRPSISQPNDSLSVSLSASELD 120

Query: 121 IPGLYLLHDFVTAKEEEELLSEVDARPWNNLAKRRVQHYGYEFCYQTRNVNTRHQLGELP 180
           IPGL+LLHDFV AKEEE+LL EVDARPWNNLAKRRVQHYGYEFCYQTRNVNT+HQLGELP
Sbjct: 121 IPGLFLLHDFVNAKEEEDLLREVDARPWNNLAKRRVQHYGYEFCYQTRNVNTKHQLGELP 180

Query: 181 SFVSHVVDRISMFPNAEDVADAVLDQLTVNEYPPGVGLSPHIDTHSAFEGLIFSLSLAGP 240
           SFVSHVVDRISMFPN ED+ADA LDQLTVNEYPPGVGLSPHIDTHSAFEGLIFSLSLAGP
Sbjct: 181 SFVSHVVDRISMFPNTEDIADASLDQLTVNEYPPGVGLSPHIDTHSAFEGLIFSLSLAGP 240

Query: 241 CIMEFRRYTEGAWHKCPSNIDLKMENSVNDSNYLRKAIYLPPRSMLLLSGEARYAWHHYI 300
           CIMEFRRY EG WHK PS+IDLKMENSVNDSNYLRKAIYLPPRSMLLLSGEARY WHHYI
Sbjct: 241 CIMEFRRYPEGTWHKFPSSIDLKMENSVNDSNYLRKAIYLPPRSMLLLSGEARYVWHHYI 300

Query: 301 PHHKIDMVKDSAIRRGPRRVSFTFRKV 327
           PHHKIDMVKDS+IRRG RRVSFTFRKV
Sbjct: 301 PHHKIDMVKDSSIRRGRRRVSFTFRKV 327

[Close]
BLAST of Cp4.1LG06g05980 vs. NCBI nr
Match: gi|659087069|ref|XP_008444260.1| (PREDICTED: alkylated DNA repair protein alkB homolog 8 [Cucumis melo])

HSP 1 Score: 593.2 bits (1528), Expect = 3.1e-166
Identity = 291/326 (89.26%), Postives = 302/326 (92.64%), Query Frame = 1 

Query: 1   MDLPRFARPRGDNGSSSSSPNLYVANCGPAVGISHRAVAAVFGDFGDVKGVHAADETGTR 60
           M+LPRF RP   NGSSSS P LYVANCGPAVGISH  +AAVF  FG VKGVHAAD+TG R
Sbjct: 1   MELPRFTRPNQHNGSSSS-PILYVANCGPAVGISHPTIAAVFAHFGHVKGVHAADDTGAR 60

Query: 61  VIVCFSEESSARAALEALHGRPCSLLGGRTLHIRYSIIRPSISQLNDSVSVSLSASELDI 120
           VIVCFSEESSA+AALE LHGRPC LLGGRTLHIRYSIIRPSISQ NDSVSVSLSASELDI
Sbjct: 61  VIVCFSEESSAQAALETLHGRPCPLLGGRTLHIRYSIIRPSISQPNDSVSVSLSASELDI 120

Query: 121 PGLYLLHDFVTAKEEEELLSEVDARPWNNLAKRRVQHYGYEFCYQTRNVNTRHQLGELPS 180
           PGL+LLHDFV AKEEE+LL EVDARPWNNLAKRRVQHYGYEFCYQTRNVNT+HQLGELP 
Sbjct: 121 PGLFLLHDFVNAKEEEDLLREVDARPWNNLAKRRVQHYGYEFCYQTRNVNTKHQLGELPP 180

Query: 181 FVSHVVDRISMFPNAEDVADAVLDQLTVNEYPPGVGLSPHIDTHSAFEGLIFSLSLAGPC 240
           FVSHVVDRIS+FPN EDVADA LDQLTVNEYPPGVGLSPHIDTHSAFEGLIFSLSLAGPC
Sbjct: 181 FVSHVVDRISLFPNTEDVADASLDQLTVNEYPPGVGLSPHIDTHSAFEGLIFSLSLAGPC 240

Query: 241 IMEFRRYTEGAWHKCPSNIDLKMENSVNDSNYLRKAIYLPPRSMLLLSGEARYAWHHYIP 300
           IMEFRRY EGAWH+ P +IDLKMENSVNDSNYLRKAIYLPPRSMLLLSGEARYAWHHYIP
Sbjct: 241 IMEFRRYPEGAWHEFPLSIDLKMENSVNDSNYLRKAIYLPPRSMLLLSGEARYAWHHYIP 300

Query: 301 HHKIDMVKDSAIRRGPRRVSFTFRKV 327
           HHKIDMVKDS+IRR PRRVSFTFRKV
Sbjct: 301 HHKIDMVKDSSIRRAPRRVSFTFRKV 325

[Close]
BLAST of Cp4.1LG06g05980 vs. NCBI nr
Match: gi|296085482|emb|CBI29214.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 489.6 bits (1259), Expect = 4.9e-135
Identity = 240/326 (73.62%), Postives = 274/326 (84.05%), Query Frame = 1 

Query: 1   MDLPRFARPRGDNGSSSSSPNLYVANCGPAVGISHRAVAAVFGDFGDVKGVHAADETGTR 60
           M LPRF+RP+G +G  S  PNLYVANCGPAVG+S   +A+VF  FG+VKGV+ AD++G R
Sbjct: 573 MGLPRFSRPKGVDGELS--PNLYVANCGPAVGLSFDTIASVFSTFGEVKGVYPADDSGAR 632

Query: 61  VIVCFSEESSARAALEALHGRPCSLLGGRTLHIRYSIIRPSISQLNDSVSVSLSASELDI 120
           VIV + EES+A+AAL+AL G PC  LGGR LHIRYSI +P  SQ+NDSV VSL  SEL+I
Sbjct: 633 VIVSYFEESAAQAALKALDGHPCPALGGRFLHIRYSIFQPP-SQVNDSVPVSLVDSELNI 692

Query: 121 PGLYLLHDFVTAKEEEELLSEVDARPWNNLAKRRVQHYGYEFCYQTRNVNTRHQLGELPS 180
           PG+YLLHDFV+AKEEEELL+ VD   W +L+KRRVQHYGYEFCY+TRNVNT+  LG+LPS
Sbjct: 693 PGIYLLHDFVSAKEEEELLAAVDKMSWKSLSKRRVQHYGYEFCYETRNVNTKQYLGKLPS 752

Query: 181 FVSHVVDRISMFPNAEDVADAVLDQLTVNEYPPGVGLSPHIDTHSAFEGLIFSLSLAGPC 240
           FVS +V+RIS FPN E  AD VLDQLTVNEYPPGVGLSPHIDTHSAFEG IFSLSLAGPC
Sbjct: 753 FVSAIVERISSFPNLESAADIVLDQLTVNEYPPGVGLSPHIDTHSAFEGFIFSLSLAGPC 812

Query: 241 IMEFRRYTEGAWHKCPSNIDLKMENSVNDSNYLRKAIYLPPRSMLLLSGEARYAWHHYIP 300
           IM+FRRYTEG W K  S+ D+ +E     S++LR+AIYLPPRSMLLLSGEARYAWHHYIP
Sbjct: 813 IMDFRRYTEGVWPKSASSSDMSVEYPDKSSSFLRRAIYLPPRSMLLLSGEARYAWHHYIP 872

Query: 301 HHKIDMVKDSAIRRGPRRVSFTFRKV 327
           HHKIDMVKDS IRRGPRRVSFTFRKV
Sbjct: 873 HHKIDMVKDSVIRRGPRRVSFTFRKV 895

[Close]
BLAST of Cp4.1LG06g05980 vs. NCBI nr
Match: gi|731382331|ref|XP_010644603.1| (PREDICTED: alkylated DNA repair protein alkB homolog 8 isoform X1 [Vitis vinifera])

HSP 1 Score: 489.6 bits (1259), Expect = 4.9e-135
Identity = 240/326 (73.62%), Postives = 274/326 (84.05%), Query Frame = 1 

Query: 1   MDLPRFARPRGDNGSSSSSPNLYVANCGPAVGISHRAVAAVFGDFGDVKGVHAADETGTR 60
           M LPRF+RP+G +G  S  PNLYVANCGPAVG+S   +A+VF  FG+VKGV+ AD++G R
Sbjct: 1   MGLPRFSRPKGVDGELS--PNLYVANCGPAVGLSFDTIASVFSTFGEVKGVYPADDSGAR 60

Query: 61  VIVCFSEESSARAALEALHGRPCSLLGGRTLHIRYSIIRPSISQLNDSVSVSLSASELDI 120
           VIV + EES+A+AAL+AL G PC  LGGR LHIRYSI +P  SQ+NDSV VSL  SEL+I
Sbjct: 61  VIVSYFEESAAQAALKALDGHPCPALGGRFLHIRYSIFQPP-SQVNDSVPVSLVDSELNI 120

Query: 121 PGLYLLHDFVTAKEEEELLSEVDARPWNNLAKRRVQHYGYEFCYQTRNVNTRHQLGELPS 180
           PG+YLLHDFV+AKEEEELL+ VD   W +L+KRRVQHYGYEFCY+TRNVNT+  LG+LPS
Sbjct: 121 PGIYLLHDFVSAKEEEELLAAVDKMSWKSLSKRRVQHYGYEFCYETRNVNTKQYLGKLPS 180

Query: 181 FVSHVVDRISMFPNAEDVADAVLDQLTVNEYPPGVGLSPHIDTHSAFEGLIFSLSLAGPC 240
           FVS +V+RIS FPN E  AD VLDQLTVNEYPPGVGLSPHIDTHSAFEG IFSLSLAGPC
Sbjct: 181 FVSAIVERISSFPNLESAADIVLDQLTVNEYPPGVGLSPHIDTHSAFEGFIFSLSLAGPC 240

Query: 241 IMEFRRYTEGAWHKCPSNIDLKMENSVNDSNYLRKAIYLPPRSMLLLSGEARYAWHHYIP 300
           IM+FRRYTEG W K  S+ D+ +E     S++LR+AIYLPPRSMLLLSGEARYAWHHYIP
Sbjct: 241 IMDFRRYTEGVWPKSASSSDMSVEYPDKSSSFLRRAIYLPPRSMLLLSGEARYAWHHYIP 300

Query: 301 HHKIDMVKDSAIRRGPRRVSFTFRKV 327
           HHKIDMVKDS IRRGPRRVSFTFRKV
Sbjct: 301 HHKIDMVKDSVIRRGPRRVSFTFRKV 323

[Close]
BLAST of Cp4.1LG06g05980 vs. NCBI nr
Match: gi|764592881|ref|XP_011465414.1| (PREDICTED: alkylated DNA repair protein alkB homolog 8 [Fragaria vesca subsp. vesca])

HSP 1 Score: 485.0 bits (1247), Expect = 1.2e-133
Identity = 239/328 (72.87%), Postives = 272/328 (82.93%), Query Frame = 1 

Query: 1   MDLPRFARPRGDNGSSSSSPNLYVANCGPAVGISHRAVAAVFGDFGDVKGVHAADETGTR 60
           M L RF RP+G    + SSPNL+VANCGPAVG+SH A+A  FG FG V GVHAAD+TG R
Sbjct: 1   MGLARFGRPKG----ALSSPNLFVANCGPAVGLSHDAIATAFGSFGQVSGVHAADDTGAR 60

Query: 61  VIVCFSEESSARAALEALHGRPCSLLGGRTLHIRYSIIRP-SISQLNDSVSVSLSASELD 120
           V+V F++ESSA+ AL ALHGRPC  L GRTLHIRYS+++P S+ +++DSV VSL  SEL 
Sbjct: 61  VVVSFAQESSAQNALNALHGRPCPDLKGRTLHIRYSVLQPTSMGRVDDSVEVSLLHSELK 120

Query: 121 IPGLYLLHDFVTAKEEEELLSEVDARPWNNLAKRRVQHYGYEFCYQTRNVNTRHQLGELP 180
           IPGLYL HDFVTAKEEEELL+ VD RPW NLAKRRVQHYGYEFCY+TRNV+++  LGE P
Sbjct: 121 IPGLYLFHDFVTAKEEEELLAAVDERPWKNLAKRRVQHYGYEFCYETRNVDSKKNLGEFP 180

Query: 181 SFVSHVVDRISMFPNAEDVADAVLDQLTVNEYPPGVGLSPHIDTHSAFEGLIFSLSLAGP 240
           SFVS +++RISM    EDV    LDQLTVNEYPPGVGLSPHIDTHSAFEGLIFSLSLAGP
Sbjct: 181 SFVSPILERISMLSKREDVETIALDQLTVNEYPPGVGLSPHIDTHSAFEGLIFSLSLAGP 240

Query: 241 CIMEFRRYTEGAW-HKCPSNIDLKMENSVNDSNYLRKAIYLPPRSMLLLSGEARYAWHHY 300
           CIMEFRRY EG W  +  S+ID++ ENS N+SN+LR+AIYLPPRS+LLLSGEARYAWHHY
Sbjct: 241 CIMEFRRYFEGGWLPRTSSSIDIETENSENNSNFLRRAIYLPPRSLLLLSGEARYAWHHY 300

Query: 301 IPHHKIDMVKDSAIRRGPRRVSFTFRKV 327
           IPHHKID VK S IRRG RRVSFT RKV
Sbjct: 301 IPHHKIDKVKGSVIRRGSRRVSFTIRKV 324

The following BLAST results are available for this feature:
BLAST of Cp4.1LG06g05980 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ALKB8_XENTR1.5e-2730.09Alkylated DNA repair protein alkB homolog 8 OS=Xenopus tropicalis GN=alkbh8 PE=2... [more]
ALKB8_MOUSE4.1e-2533.33Alkylated DNA repair protein alkB homolog 8 OS=Mus musculus GN=Alkbh8 PE=1 SV=1[more]
ALKB8_MACFA2.3e-2332.75Alkylated DNA repair protein alkB homolog 8 OS=Macaca fascicularis GN=ALKBH8 PE=... [more]
ALKB8_BOVIN2.9e-2333.19Alkylated DNA repair protein alkB homolog 8 OS=Bos taurus GN=ALKBH8 PE=2 SV=1[more]
ALKB8_HUMAN2.9e-2333.19Alkylated DNA repair protein alkB homolog 8 OS=Homo sapiens GN=ALKBH8 PE=1 SV=2[more]
BLAST of Cp4.1LG06g05980 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L3H6_CUCSA2.6e-16789.60Uncharacterized protein OS=Cucumis sativus GN=Csa_4G669210 PE=4 SV=1[more]
D7TFE1_VITVI3.4e-13573.62Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0087g00460 PE=4 SV=... [more]
A0A0G4AM79_9ROSI1.3e-13171.17RNA-binding (RRM/RBD/RNP motifs) family protein OS=Pelargonium transvaalense PE=... [more]
A0A0G4ANS6_9ROSI1.9e-13070.87RNA-binding (RRM/RBD/RNP motifs) family protein OS=Pelargonium dichondrifolium P... [more]
M5WGJ1_PRUPE3.3e-13070.00Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008098mg PE=4 SV=1[more]
BLAST of Cp4.1LG06g05980 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G31600.11.5e-11865.96 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT4G02485.12.9e-1326.48 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily prot... [more]
BLAST of Cp4.1LG06g05980 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449455667|ref|XP_004145573.1|3.7e-16789.60PREDICTED: alkylated DNA repair protein alkB homolog 8 [Cucumis sativus][more]
gi|659087069|ref|XP_008444260.1|3.1e-16689.26PREDICTED: alkylated DNA repair protein alkB homolog 8 [Cucumis melo][more]
gi|296085482|emb|CBI29214.3|4.9e-13573.62unnamed protein product [Vitis vinifera][more]
gi|731382331|ref|XP_010644603.1|4.9e-13573.62PREDICTED: alkylated DNA repair protein alkB homolog 8 isoform X1 [Vitis vinifer... [more]
gi|764592881|ref|XP_011465414.1|1.2e-13372.87PREDICTED: alkylated DNA repair protein alkB homolog 8 [Fragaria vesca subsp. ve... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0016491oxidoreductase activity
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
Vocabulary: INTERPRO
TermDefinition
IPR027450AlkB-like
IPR012677Nucleotide-bd_a/b_plait_sf
IPR005123Oxoglu/Fe-dep_dioxygenase
IPR000504RRM_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019344 cysteine biosynthetic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0043547 positive regulation of GTPase activity
biological_process GO:0080092 regulation of pollen tube growth
biological_process GO:0002098 tRNA wobble uridine modification
biological_process GO:0065009 regulation of molecular function
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
molecular_function GO:0005089 Rho guanyl-nucleotide exchange factor activity
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG06g05980.1Cp4.1LG06g05980.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 20..98
score: 9
IPR005123Oxoglutarate/iron-dependent dioxygenasePROFILEPS51471FE2OG_OXYcoord: 202..327
score: 9
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 11..96
score: 3.
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 13..102
score: 4.0
IPR027450Alpha-ketoglutarate-dependent dioxygenase AlkB-likeGENE3DG3DSA:2.60.120.590coord: 119..327
score: 3.2
IPR027450Alpha-ketoglutarate-dependent dioxygenase AlkB-likePFAMPF135322OG-FeII_Oxy_2coord: 154..324
score: 6.7
NoneNo IPR availablePANTHERPTHR13069UNCHARACTERIZEDcoord: 34..353
score: 1.6E
NoneNo IPR availablePANTHERPTHR13069:SF82-OXOGLUTARATE AND FE-DEPENDENT OXYGENASE FAMILY PROTEINcoord: 34..353
score: 1.6E
NoneNo IPR availableunknownSSF51197Clavaminate synthase-likecoord: 120..326
score: 2.75

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG06g05980Csa4G669210Cucumber (Chinese Long) v2cpecuB790
Cp4.1LG06g05980MELO3C010538Melon (DHL92) v3.5.1cpemeB730
Cp4.1LG06g05980MELO3C010538.2Melon (DHL92) v3.6.1cpemedB863
Cp4.1LG06g05980CsaV3_4G037900Cucumber (Chinese Long) v3cpecucB0978
Cp4.1LG06g05980Bhi09G002352Wax gourdcpewgoB0996
Cp4.1LG06g05980CsGy4G025800Cucumber (Gy14) v2cgybcpeB570
Cp4.1LG06g05980Carg20068Silver-seed gourdcarcpeB1455
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG06g05980Cucurbita pepo (Zucchini)cpecpeB468
Cp4.1LG06g05980Cucurbita maxima (Rimu)cmacpeB060
Cp4.1LG06g05980Cucurbita maxima (Rimu)cmacpeB503
Cp4.1LG06g05980Cucurbita moschata (Rifu)cmocpeB034
Cp4.1LG06g05980Cucurbita moschata (Rifu)cmocpeB461
Cp4.1LG06g05980Bottle gourd (USVL1VR-Ls)cpelsiB639
Cp4.1LG06g05980Watermelon (Charleston Gray)cpewcgB695
Cp4.1LG06g05980Watermelon (97103) v1cpewmB776
Cp4.1LG06g05980Cucumber (Gy14) v2cgybcpeB566
Cp4.1LG06g05980Silver-seed gourdcarcpeB0947
Cp4.1LG06g05980Cucumber (Chinese Long) v3cpecucB0973