CsGy4G021360 (gene) Cucumber (Gy14) v2

Overview
NameCsGy4G021360
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Descriptionprotein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like
LocationChr4 : 28006316 .. 28007314 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCTAATTCTTTCATTTTTCTTGTGTTTCCCCCCTTCTATTACTCCCCACTCAACAAAATTCTTGTTCCCCTTCTGATCTCTTCACTCTGCTACCTCCAAAACATTTACCTAATTTGTTTTCTTTGTTAAATCTAATCTTGAAGAGATCGATCATATGTCAAGTAGTAAAGGCAAGGATGTTCATGAAGGATCATCATCAAATTCCTCTTCTTCTTCCTCAGCTCTAATCGTTGTTGTTGACGATCACAATCATCATCAACAACAACAACAACAGTTTGAACGAGGAGATGAGCAAGCAGCACCAACATCGTCAGTAGTAGGCGCACCAGTGATTAGTCGGTACGAGTCACAAAAGAGGAGAGATTGGTACACTTTTGGGCAATATTTGAGGAACCAAAGGCCACCATTGGCTATATCACAATGCAATTCAAGTCATGTATTGGAATTCCTGAGATATCTAGACCAATTTGGGAAGACAAAAGTGCATTTAAATGGGTGTGGTTTCTTTGGAGAACCTGAGCCAGCAGGGCCTTGTACTTGCCCTCTTAGACAAGCTTGGGGCAGCCTTGATGCCCTTATTGGTCGCCTTAGAGCTGCTTATGAAGAAAATGGAGGCTCATCAGACACTAATCCATTTGCTAGTGGTGCTATTAGGGTTTATTTAAGGGAAGTTAGGGATTCTCAATCCAAGGCCAGAGGAATCCCATATAAGAAGAAGAAGAAAAAGAAGATTCCAATTAACACTCGTCAACAAGGTAAATATATATCCTAATTCAAATATTAATATTAATATATGTATGCTATTTAGTATTACGATGACGAGGATAGTTAAACGCTAATCCAACAAATCTAATCTTGAAGTACTTCAAATTCAAACCTTTGATTTTTAGGAAAAGAACTAAATGATTAATGTATATATCAAAGTTTTTGTTGGTTTCAAAACATGTTTGAGATTGATTATGAAGTTTATTTATTCAGGTCGATCAAAATACACATAA

mRNA sequence

ATCTAATTCTTTCATTTTTCTTGTGTTTCCCCCCTTCTATTACTCCCCACTCAACAAAATTCTTGTTCCCCTTCTGATCTCTTCACTCTGCTACCTCCAAAACATTTACCTAATTTGTTTTCTTTGTTAAATCTAATCTTGAAGAGATCGATCATATGTCAAGTAGTAAAGGCAAGGATGTTCATGAAGGATCATCATCAAATTCCTCTTCTTCTTCCTCAGCTCTAATCGTTGTTGTTGACGATCACAATCATCATCAACAACAACAACAACAGTTTGAACGAGGAGATGAGCAAGCAGCACCAACATCGTCAGTAGTAGGCGCACCAGTGATTAGTCGGTACGAGTCACAAAAGAGGAGAGATTGGTACACTTTTGGGCAATATTTGAGGAACCAAAGGCCACCATTGGCTATATCACAATGCAATTCAAGTCATGTATTGGAATTCCTGAGATATCTAGACCAATTTGGGAAGACAAAAGTGCATTTAAATGGGTGTGGTTTCTTTGGAGAACCTGAGCCAGCAGGGCCTTGTACTTGCCCTCTTAGACAAGCTTGGGGCAGCCTTGATGCCCTTATTGGTCGCCTTAGAGCTGCTTATGAAGAAAATGGAGGCTCATCAGACACTAATCCATTTGCTAGTGGTGCTATTAGGGTTTATTTAAGGGAAGTTAGGGATTCTCAATCCAAGGCCAGAGGAATCCCATATAAGAAGAAGAAGAAAAAGAAGATTCCAATTAACACTCGTCAACAAGGTCGATCAAAATACACATAA

Coding sequence (CDS)

ATGTCAAGTAGTAAAGGCAAGGATGTTCATGAAGGATCATCATCAAATTCCTCTTCTTCTTCCTCAGCTCTAATCGTTGTTGTTGACGATCACAATCATCATCAACAACAACAACAACAGTTTGAACGAGGAGATGAGCAAGCAGCACCAACATCGTCAGTAGTAGGCGCACCAGTGATTAGTCGGTACGAGTCACAAAAGAGGAGAGATTGGTACACTTTTGGGCAATATTTGAGGAACCAAAGGCCACCATTGGCTATATCACAATGCAATTCAAGTCATGTATTGGAATTCCTGAGATATCTAGACCAATTTGGGAAGACAAAAGTGCATTTAAATGGGTGTGGTTTCTTTGGAGAACCTGAGCCAGCAGGGCCTTGTACTTGCCCTCTTAGACAAGCTTGGGGCAGCCTTGATGCCCTTATTGGTCGCCTTAGAGCTGCTTATGAAGAAAATGGAGGCTCATCAGACACTAATCCATTTGCTAGTGGTGCTATTAGGGTTTATTTAAGGGAAGTTAGGGATTCTCAATCCAAGGCCAGAGGAATCCCATATAAGAAGAAGAAGAAAAAGAAGATTCCAATTAACACTCGTCAACAAGGTCGATCAAAATACACATAA

Protein sequence

MSSSKGKDVHEGSSSNSSSSSSALIVVVDDHNHHQQQQQQFERGDEQAAPTSSVVGAPVISRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGEPEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKARGIPYKKKKKKKIPINTRQQGRSKYT
Homology
[Close]
BLAST of CsGy4G021360 vs. NCBI nr
Match: XP_004146094.2 (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis sativus] >KGN55073.1 hypothetical protein Csa_4G627230 [Cucumis sativus])

HSP 1 Score: 310.5 bits (794), Expect = 4.4e-81
Identity = 199/201 (99.00%), Postives = 199/201 (99.00%), Query Frame = 0 

Query: 1   MSSSKGKDVHEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGAPVI 60
           MSSSKGKDVHEG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGAPVI
Sbjct: 1   MSSSKGKDVHEG-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGAPVI 60

Query: 61  SRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGE 120
           SRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGE
Sbjct: 61  SRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGE 120

Query: 121 PEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKA 180
           PEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKA
Sbjct: 121 PEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKA 180

Query: 181 RGIPYKKKKKKKIPINTRQQG 202
           RGIPYKKKKKKKIPINT QQG
Sbjct: 181 RGIPYKKKKKKKIPINTHQQG 200

[Close]
BLAST of CsGy4G021360 vs. NCBI nr
Match: XP_008463732.1 (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo])

HSP 1 Score: 304.3 bits (778), Expect = 3.2e-79
Identity = 189/201 (94.03%), Postives = 189/201 (94.03%), Query Frame = 0 

Query: 1   MSSSKGKDVHEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGAPVI 60
           MSSSKGKDVHEG   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        PVI
Sbjct: 1   MSSSKGKDVHEG---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGDEAAPTPVI 60

Query: 61  SRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGE 120
           SRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGE
Sbjct: 61  SRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGE 120

Query: 121 PEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKA 180
           PEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKA
Sbjct: 121 PEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKA 180

Query: 181 RGIPYKKKKKKKIPINTRQQG 202
           RGIPYKKKKKKKIPINT QQG
Sbjct: 181 RGIPYKKKKKKKIPINTHQQG 198

[Close]
BLAST of CsGy4G021360 vs. NCBI nr
Match: XP_022976576.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita maxima])

HSP 1 Score: 276.2 bits (705), Expect = 9.2e-71
Identity = 130/142 (91.55%), Postives = 137/142 (96.48%), Query Frame = 0 

Query: 60  ISRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFG 119
           +SRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVL+FLRYLDQFGKTKVHLNGCGFFG
Sbjct: 79  VSRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFG 138

Query: 120 EPEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSK 179
           +PEP GPCTCPLRQAWGSLDALIGRLRAAYEENGG+SDTNPFASGAIRVYLRE++DSQSK
Sbjct: 139 QPEPPGPCTCPLRQAWGSLDALIGRLRAAYEENGGTSDTNPFASGAIRVYLRELKDSQSK 198

Query: 180 ARGIPYKKKKKKKIPINTRQQG 202
           ARGIPY KKKKKKIP +T Q G
Sbjct: 199 ARGIPY-KKKKKKIPSHTHQPG 219

[Close]
BLAST of CsGy4G021360 vs. NCBI nr
Match: XP_022937367.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita moschata])

HSP 1 Score: 272.3 bits (695), Expect = 1.3e-69
Identity = 127/142 (89.44%), Postives = 133/142 (93.66%), Query Frame = 0 

Query: 60  ISRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFG 119
           +SRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVL+FLRYLDQFGKTKVHLNGCGFFG
Sbjct: 73  VSRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFG 132

Query: 120 EPEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSK 179
           +PEP GPCTCPL+QAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREV+DSQSK
Sbjct: 133 QPEPPGPCTCPLKQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVKDSQSK 192

Query: 180 ARGIPYKKKKKKKIPINTRQQG 202
           ARGIPYKK     IP +T Q G
Sbjct: 193 ARGIPYKKXXXXXIPTHTHQPG 214

[Close]
BLAST of CsGy4G021360 vs. NCBI nr
Match: XP_022940383.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita moschata])

HSP 1 Score: 271.2 bits (692), Expect = 3.0e-69
Identity = 124/132 (93.94%), Postives = 131/132 (99.24%), Query Frame = 0 

Query: 60  ISRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFG 119
           +SRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVL+FLRYLDQFGKTKVHLNGCGFFG
Sbjct: 39  VSRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFG 98

Query: 120 EPEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSK 179
           +PEP GPCTCPL+QAWGSLDALIGRLRAAYEENGGSS+TNPFASGAIR+YLRE+RDSQSK
Sbjct: 99  QPEPPGPCTCPLKQAWGSLDALIGRLRAAYEENGGSSETNPFASGAIRIYLREIRDSQSK 158

Query: 180 ARGIPYKKKKKK 192
           ARGIPYKKKKKK
Sbjct: 159 ARGIPYKKKKKK 170

[Close]
BLAST of CsGy4G021360 vs. TAIR10
Match: AT2G42610.1 (Protein of unknown function (DUF640))

HSP 1 Score: 229.6 bits (584), Expect = 1.8e-60
Identity = 103/126 (81.75%), Postives = 115/126 (91.27%), Query Frame = 0 

Query: 61  SRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGE 120
           SRYESQKRRDW TFGQYL+NQRPP+ +S C+ +HVL+FLRYLDQFGKTKVH+ GC F+G+
Sbjct: 24  SRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQFGKTKVHVPGCMFYGQ 83

Query: 121 PEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKA 180
           PEP  PCTCPLRQAWGSLDALIGRLRAAYEENGG  +TNPFASGAIRVYLREVR+ Q+KA
Sbjct: 84  PEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFASGAIRVYLREVRECQAKA 143

Query: 181 RGIPYK 187
           RGIPYK
Sbjct: 144 RGIPYK 149

[Close]
BLAST of CsGy4G021360 vs. TAIR10
Match: AT1G78815.1 (Protein of unknown function (DUF640))

HSP 1 Score: 221.9 bits (564), Expect = 3.7e-58
Identity = 99/128 (77.34%), Postives = 115/128 (89.84%), Query Frame = 0 

Query: 60  ISRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFG 119
           +SRYESQKRRDW TF QYLRNQ+PP+ ISQC S+H+L+FL+YLDQFGKTKVH++GC FFG
Sbjct: 38  LSRYESQKRRDWNTFCQYLRNQQPPVHISQCGSNHILDFLQYLDQFGKTKVHIHGCVFFG 97

Query: 120 EPEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSK 179
           + EPAG C CPL+QAWGSLDALIGRLRAA+EENGG  + NPFA G IRV+LREVRDSQ+K
Sbjct: 98  QVEPAGQCNCPLKQAWGSLDALIGRLRAAFEENGGLPERNPFAGGGIRVFLREVRDSQAK 157

Query: 180 ARGIPYKK 188
           ARG+PYKK
Sbjct: 158 ARGVPYKK 165

[Close]
BLAST of CsGy4G021360 vs. TAIR10
Match: AT1G07090.1 (Protein of unknown function (DUF640))

HSP 1 Score: 220.3 bits (560), Expect = 1.1e-57
Identity = 98/137 (71.53%), Postives = 120/137 (87.59%), Query Frame = 0 

Query: 61  SRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGE 120
           SRYESQKRRDW TF QYL+N +PPLA+S+C+ +HV+EFL+YLDQFGKTKVH+  C +FG 
Sbjct: 30  SRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKTKVHVAACPYFGH 89

Query: 121 PEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKA 180
            +P  PC+CPL+QAWGSLDALIGRLRAAYEENGG  D+NPFA+ A+R+YLREVR+SQ+KA
Sbjct: 90  QQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRIYLREVRESQAKA 149

Query: 181 RGIPYKKKKKKKIPINT 198
           RGIPY+KKK+K+ P  T
Sbjct: 150 RGIPYEKKKRKRPPTVT 166

[Close]
BLAST of CsGy4G021360 vs. TAIR10
Match: AT3G23290.2 (Protein of unknown function (DUF640))

HSP 1 Score: 218.0 bits (554), Expect = 5.4e-57
Identity = 97/127 (76.38%), Postives = 112/127 (88.19%), Query Frame = 0 

Query: 60  ISRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFG 119
           +SRYE+QKRRDW TFGQYLRN RPPL++S+C+ +HVLEFLRYLDQFGKTKVH + C FFG
Sbjct: 46  LSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFG 105

Query: 120 EPEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSK 179
            P P  PC CPLRQAWGSLDALIGRLRAA+EENGGS +TNPF + A+R+YLREVRDSQ+K
Sbjct: 106 HPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAK 165

Query: 180 ARGIPYK 187
           ARGI Y+
Sbjct: 166 ARGISYE 172

[Close]
BLAST of CsGy4G021360 vs. TAIR10
Match: AT4G18610.1 (Protein of unknown function (DUF640))

HSP 1 Score: 214.2 bits (544), Expect = 7.8e-56
Identity = 99/129 (76.74%), Postives = 115/129 (89.15%), Query Frame = 0 

Query: 60  ISRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFG 119
           +SRYESQKRRDW TF QYL++Q PPL +SQ + +HVL FLRYLDQFGKTKVH   C FFG
Sbjct: 35  LSRYESQKRRDWNTFVQYLKSQNPPLMMSQFDYTHVLSFLRYLDQFGKTKVHHQACVFFG 94

Query: 120 EPEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSS-DTNPFASGAIRVYLREVRDSQS 179
           +P+P GPCTCPL+QAWGSLDALIGRLRAAYEE+GG S DTNPFA+G+IRV+LREVR+SQ+
Sbjct: 95  QPDPPGPCTCPLKQAWGSLDALIGRLRAAYEEHGGGSPDTNPFANGSIRVHLREVRESQA 154

Query: 180 KARGIPYKK 188
           KARGIPY+K
Sbjct: 155 KARGIPYRK 163

[Close]
BLAST of CsGy4G021360 vs. Swiss-Prot
Match: sp|Q9S7R3|LSH10_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana OX=3702 GN=LSH10 PE=1 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 3.2e-59
Identity = 103/126 (81.75%), Postives = 115/126 (91.27%), Query Frame = 0 

Query: 61  SRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGE 120
           SRYESQKRRDW TFGQYL+NQRPP+ +S C+ +HVL+FLRYLDQFGKTKVH+ GC F+G+
Sbjct: 24  SRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQFGKTKVHVPGCMFYGQ 83

Query: 121 PEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKA 180
           PEP  PCTCPLRQAWGSLDALIGRLRAAYEENGG  +TNPFASGAIRVYLREVR+ Q+KA
Sbjct: 84  PEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFASGAIRVYLREVRECQAKA 143

Query: 181 RGIPYK 187
           RGIPYK
Sbjct: 144 RGIPYK 149

[Close]
BLAST of CsGy4G021360 vs. Swiss-Prot
Match: sp|A2XED8|G1L7_ORYSI (Protein G1-like7 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_10694 PE=3 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 3.0e-57
Identity = 97/128 (75.78%), Postives = 116/128 (90.62%), Query Frame = 0 

Query: 60  ISRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFG 119
           +SRYESQKRRDW TF QYLRN RPPL +++C+ +HV+EFLRYLDQFGKTKVH +GC F+G
Sbjct: 29  LSRYESQKRRDWNTFLQYLRNHRPPLTLARCSGAHVIEFLRYLDQFGKTKVHASGCAFYG 88

Query: 120 EPEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSK 179
           +P P GPC CPLRQAWGSLDALIGRLRAAYEE+GG+ ++NPFA+ A+R+YLREVRDSQ+K
Sbjct: 89  QPSPPGPCPCPLRQAWGSLDALIGRLRAAYEESGGTPESNPFAARAVRIYLREVRDSQAK 148

Query: 180 ARGIPYKK 188
           ARGIPY+K
Sbjct: 149 ARGIPYEK 156

[Close]
BLAST of CsGy4G021360 vs. Swiss-Prot
Match: sp|Q941W1|G1L7_ORYSJ (Protein G1-like7 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L7 PE=1 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 3.0e-57
Identity = 97/128 (75.78%), Postives = 116/128 (90.62%), Query Frame = 0 

Query: 60  ISRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFG 119
           +SRYESQKRRDW TF QYLRN RPPL +++C+ +HV+EFLRYLDQFGKTKVH +GC F+G
Sbjct: 29  LSRYESQKRRDWNTFLQYLRNHRPPLTLARCSGAHVIEFLRYLDQFGKTKVHASGCAFYG 88

Query: 120 EPEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSK 179
           +P P GPC CPLRQAWGSLDALIGRLRAAYEE+GG+ ++NPFA+ A+R+YLREVRDSQ+K
Sbjct: 89  QPSPPGPCPCPLRQAWGSLDALIGRLRAAYEESGGTPESNPFAARAVRIYLREVRDSQAK 148

Query: 180 ARGIPYKK 188
           ARGIPY+K
Sbjct: 149 ARGIPYEK 156

[Close]
BLAST of CsGy4G021360 vs. Swiss-Prot
Match: sp|Q9ZVA0|LSH7_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 7 OS=Arabidopsis thaliana OX=3702 GN=LSH7 PE=1 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 6.7e-57
Identity = 99/128 (77.34%), Postives = 115/128 (89.84%), Query Frame = 0 

Query: 60  ISRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFG 119
           +SRYESQKRRDW TF QYLRNQ+PP+ ISQC S+H+L+FL+YLDQFGKTKVH++GC FFG
Sbjct: 38  LSRYESQKRRDWNTFCQYLRNQQPPVHISQCGSNHILDFLQYLDQFGKTKVHIHGCVFFG 97

Query: 120 EPEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSK 179
           + EPAG C CPL+QAWGSLDALIGRLRAA+EENGG  + NPFA G IRV+LREVRDSQ+K
Sbjct: 98  QVEPAGQCNCPLKQAWGSLDALIGRLRAAFEENGGLPERNPFAGGGIRVFLREVRDSQAK 157

Query: 180 ARGIPYKK 188
           ARG+PYKK
Sbjct: 158 ARGVPYKK 165

[Close]
BLAST of CsGy4G021360 vs. Swiss-Prot
Match: sp|Q9LMK2|LSH6_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 OS=Arabidopsis thaliana OX=3702 GN=LSH6 PE=1 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 2.0e-56
Identity = 98/137 (71.53%), Postives = 120/137 (87.59%), Query Frame = 0 

Query: 61  SRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGE 120
           SRYESQKRRDW TF QYL+N +PPLA+S+C+ +HV+EFL+YLDQFGKTKVH+  C +FG 
Sbjct: 30  SRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKTKVHVAACPYFGH 89

Query: 121 PEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKA 180
            +P  PC+CPL+QAWGSLDALIGRLRAAYEENGG  D+NPFA+ A+R+YLREVR+SQ+KA
Sbjct: 90  QQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRIYLREVRESQAKA 149

Query: 181 RGIPYKKKKKKKIPINT 198
           RGIPY+KKK+K+ P  T
Sbjct: 150 RGIPYEKKKRKRPPTVT 166

[Close]
BLAST of CsGy4G021360 vs. TrEMBL
Match: tr|A0A0A0L028|A0A0A0L028_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G627230 PE=4 SV=1)

HSP 1 Score: 310.5 bits (794), Expect = 2.9e-81
Identity = 199/201 (99.00%), Postives = 199/201 (99.00%), Query Frame = 0 

Query: 1   MSSSKGKDVHEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGAPVI 60
           MSSSKGKDVHEG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGAPVI
Sbjct: 1   MSSSKGKDVHEG-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGAPVI 60

Query: 61  SRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGE 120
           SRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGE
Sbjct: 61  SRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGE 120

Query: 121 PEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKA 180
           PEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKA
Sbjct: 121 PEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKA 180

Query: 181 RGIPYKKKKKKKIPINTRQQG 202
           RGIPYKKKKKKKIPINT QQG
Sbjct: 181 RGIPYKKKKKKKIPINTHQQG 200

[Close]
BLAST of CsGy4G021360 vs. TrEMBL
Match: tr|A0A1S3CJY2|A0A1S3CJY2_CUCME (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo OX=3656 GN=LOC103501807 PE=4 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 2.1e-79
Identity = 189/201 (94.03%), Postives = 189/201 (94.03%), Query Frame = 0 

Query: 1   MSSSKGKDVHEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGAPVI 60
           MSSSKGKDVHEG   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        PVI
Sbjct: 1   MSSSKGKDVHEG---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGDEAAPTPVI 60

Query: 61  SRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGE 120
           SRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGE
Sbjct: 61  SRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGE 120

Query: 121 PEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKA 180
           PEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKA
Sbjct: 121 PEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKA 180

Query: 181 RGIPYKKKKKKKIPINTRQQG 202
           RGIPYKKKKKKKIPINT QQG
Sbjct: 181 RGIPYKKKKKKKIPINTHQQG 198

[Close]
BLAST of CsGy4G021360 vs. TrEMBL
Match: tr|A0A161ZUI3|A0A161ZUI3_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_021023 PE=4 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 2.0e-66
Identity = 120/137 (87.59%), Postives = 130/137 (94.89%), Query Frame = 0 

Query: 57  APVISRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCG 116
           AP +SRYESQKRRDW TFGQYL+NQRPP+A+SQCN SHVLEFLRYLDQFGKTKVH  GCG
Sbjct: 29  APQLSRYESQKRRDWNTFGQYLKNQRPPVAMSQCNYSHVLEFLRYLDQFGKTKVHAQGCG 88

Query: 117 FFGEPEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDS 176
           +FG P+PAGPCTCPLRQAWGSLDALIGRLRAAYEENGG+ +TNPFASGAIRVYLREVRDS
Sbjct: 89  YFGHPDPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGAPETNPFASGAIRVYLREVRDS 148

Query: 177 QSKARGIPYKKKKKKKI 194
           Q+KARGIPYKKKKKK+I
Sbjct: 149 QAKARGIPYKKKKKKRI 165

[Close]
BLAST of CsGy4G021360 vs. TrEMBL
Match: tr|B9N975|B9N975_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G390900v3 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 4.5e-66
Identity = 120/146 (82.19%), Postives = 132/146 (90.41%), Query Frame = 0 

Query: 58  PVISRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGF 117
           P +SRYESQKRRDW TFGQYLRNQRPP+A+SQCN++HVLEFLRYLDQFGKTKVHL GC F
Sbjct: 27  PPLSRYESQKRRDWNTFGQYLRNQRPPVALSQCNANHVLEFLRYLDQFGKTKVHLQGCVF 86

Query: 118 FGEPEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQ 177
           FG+PEP GPCTCPL+QAWGSLDALIGRLRAAYEENGG  +TNPFASGAIRVYLREVRDSQ
Sbjct: 87  FGQPEPPGPCTCPLKQAWGSLDALIGRLRAAYEENGGLPETNPFASGAIRVYLREVRDSQ 146

Query: 178 SKARGIPYKKKKKKKIPINTRQQGRS 204
           +KARGIPYKKKKKK+ P+    +  S
Sbjct: 147 AKARGIPYKKKKKKRNPMKANDESSS 172

[Close]
BLAST of CsGy4G021360 vs. TrEMBL
Match: tr|A0A0D2M7C6|A0A0D2M7C6_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_002G061000 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 5.9e-66
Identity = 119/148 (80.41%), Postives = 133/148 (89.86%), Query Frame = 0 

Query: 58  PVISRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGF 117
           P +SRYESQKRRDW TFGQYLRNQRPP+A+SQCN++HVLEFLRYLDQFGKTKVHL GC F
Sbjct: 41  PPLSRYESQKRRDWNTFGQYLRNQRPPVALSQCNANHVLEFLRYLDQFGKTKVHLQGCVF 100

Query: 118 FGEPEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQ 177
           FG+PEP GPCTCPLRQAWGSLDALIGRLRAAYEENGG  +TNPFASGAIR+YLREVRDSQ
Sbjct: 101 FGQPEPPGPCTCPLRQAWGSLDALIGRLRAAYEENGGLPETNPFASGAIRIYLREVRDSQ 160

Query: 178 SKARGIPYKKKKKKKIPINTRQQGRSKY 206
           +KARGIPYKKKKKK+ P+   +   + +
Sbjct: 161 AKARGIPYKKKKKKRNPLKATEVSSTSF 188

The following BLAST results are available for this feature:
BLAST of CsGy4G021360 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004146094.24.4e-8199.00PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis sativus] >K... [more]
XP_008463732.13.2e-7994.03PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo][more]
XP_022976576.19.2e-7191.55protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita maxima][more]
XP_022937367.11.3e-6989.44protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita moschata][more]
XP_022940383.13.0e-6993.94protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita moschata][more]
BLAST of CsGy4G021360 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G42610.11.8e-6081.75Protein of unknown function (DUF640)[more]
AT1G78815.13.7e-5877.34Protein of unknown function (DUF640)[more]
AT1G07090.11.1e-5771.53Protein of unknown function (DUF640)[more]
AT3G23290.25.4e-5776.38Protein of unknown function (DUF640)[more]
AT4G18610.17.8e-5676.74Protein of unknown function (DUF640)[more]
BLAST of CsGy4G021360 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9S7R3|LSH10_ARATH3.2e-5981.75Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana OX=3702 GN=L... [more]
sp|A2XED8|G1L7_ORYSI3.0e-5775.78Protein G1-like7 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_10694 PE=3 SV=1[more]
sp|Q941W1|G1L7_ORYSJ3.0e-5775.78Protein G1-like7 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L7 PE=1 SV=1[more]
sp|Q9ZVA0|LSH7_ARATH6.7e-5777.34Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 7 OS=Arabidopsis thaliana OX=3702 GN=LS... [more]
sp|Q9LMK2|LSH6_ARATH2.0e-5671.53Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 OS=Arabidopsis thaliana OX=3702 GN=LS... [more]
BLAST of CsGy4G021360 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L028|A0A0A0L028_CUCSA2.9e-8199.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G627230 PE=4 SV=1[more]
tr|A0A1S3CJY2|A0A1S3CJY2_CUCME2.1e-7994.03protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo OX=3656 GN=LOC1... [more]
tr|A0A161ZUI3|A0A161ZUI3_DAUCA2.0e-6687.59Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_021023 ... [more]
tr|B9N975|B9N975_POPTR4.5e-6682.19Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G390900v3 PE=... [more]
tr|A0A0D2M7C6|A0A0D2M7C6_GOSRA5.9e-6680.41Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_002G061000 PE=4 ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006936ALOG_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009299 mRNA transcription
biological_process GO:0009416 response to light stimulus
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy4G021360.1CsGy4G021360.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006936ALOG domainPFAMPF04852DUF640coord: 58..175
e-value: 7.3E-62
score: 207.0
IPR006936ALOG domainPROSITEPS51697ALOGcoord: 62..189
score: 75.326
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 176..206
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 183..197
NoneNo IPR availablePANTHERPTHR31165:SF9SUBFAMILY NOT NAMEDcoord: 1..198
NoneNo IPR availablePANTHERPTHR31165FAMILY NOT NAMEDcoord: 1..198

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy4G021360Cla023336Watermelon (97103) v1cgybwmB326
CsGy4G021360Csa4G627230Cucumber (Chinese Long) v2cgybcuB166
CsGy4G021360MELO3C025635Melon (DHL92) v3.5.1cgybmeB254
CsGy4G021360ClCG11G017510Watermelon (Charleston Gray)cgybwcgB259
CsGy4G021360CSPI07G04760Wild cucumber (PI 183967)cgybcpiB196
CsGy4G021360CSPI04G22950Wild cucumber (PI 183967)cgybcpiB169
CsGy4G021360CmaCh13G006040Cucurbita maxima (Rimu)cgybcmaB482
CsGy4G021360CmaCh01G012450Cucurbita maxima (Rimu)cgybcmaB515
CsGy4G021360CmoCh13G006300Cucurbita moschata (Rifu)cgybcmoB452
CsGy4G021360CmoCh01G013000Cucurbita moschata (Rifu)cgybcmoB484
CsGy4G021360CmoCh09G008100Cucurbita moschata (Rifu)cgybcmoB440
CsGy4G021360Lsi02G008070Bottle gourd (USVL1VR-Ls)cgyblsiB252
CsGy4G021360Lsi04G020190Bottle gourd (USVL1VR-Ls)cgyblsiB263
CsGy4G021360Cp4.1LG06g06460Cucurbita pepo (Zucchini)cgybcpeB568
CsGy4G021360Cp4.1LG02g02020Cucurbita pepo (Zucchini)cgybcpeB540
CsGy4G021360MELO3C025635.2Melon (DHL92) v3.6.1cgybmedB252
CsGy4G021360CsaV3_4G033170Cucumber (Chinese Long) v3cgybcucB171
CsGy4G021360Cla97C11G223600Watermelon (97103) v2cgybwmbB265
CsGy4G021360Bhi09G002863Wax gourdcgybwgoB398
CsGy4G021360Carg14730Silver-seed gourdcarcgybB0323
CsGy4G021360Carg17052Silver-seed gourdcarcgybB0184
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CsGy4G021360CsGy7G004310Cucumber (Gy14) v2cgybcgybB137
The following block(s) are covering this gene:
GeneOrganismBlock
CsGy4G021360Cucumber (Gy14) v2cgybcgybB120
CsGy4G021360Cucurbita maxima (Rimu)cgybcmaB466
CsGy4G021360Cucurbita maxima (Rimu)cgybcmaB470
CsGy4G021360Cucurbita maxima (Rimu)cgybcmaB472
CsGy4G021360Cucurbita maxima (Rimu)cgybcmaB500
CsGy4G021360Cucurbita moschata (Rifu)cgybcmoB437
CsGy4G021360Cucurbita moschata (Rifu)cgybcmoB434
CsGy4G021360Cucurbita moschata (Rifu)cgybcmoB470
CsGy4G021360Cucurbita pepo (Zucchini)cgybcpeB490
CsGy4G021360Cucurbita pepo (Zucchini)cgybcpeB563
CsGy4G021360Cucurbita pepo (Zucchini)cgybcpeB566
CsGy4G021360Cucumber (Chinese Long) v2cgybcuB170
CsGy4G021360Bottle gourd (USVL1VR-Ls)cgyblsiB281
CsGy4G021360Watermelon (Charleston Gray)cgybwcgB307
CsGy4G021360Wild cucumber (PI 183967)cgybcpiB173
CsGy4G021360Silver-seed gourdcarcgybB0182
CsGy4G021360Silver-seed gourdcarcgybB0653
CsGy4G021360Cucumber (Chinese Long) v3cgybcucB173
CsGy4G021360Watermelon (97103) v2cgybwmbB310