Cp4.1LG06g06460 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG06g06460
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Protein of unknown function (DUF640)
Location	Cp4.1LG06 : 4046703 .. 4047447 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGACTAGTAAAGGCAACGATGTTGGTGAAGGATCGTCGTCAAATTCCTCTTCGTCTTCGTCTCTCGTTGCTGTTATCGACGATCGTAATCAAACAGCAGTAGCTCCTGTGAATCGGTACGAATCTCAAAAGAGGAGAGATTGGTACACGTTTGGACAATATTTGAGGAACCAAAGACCTCCATTGGCTATCTCCCAATGCAATTCAAGTCATGTTTTGGATTTCCTTCGATATCTCGACCAATTTGGGAAGACAAAAGTGCATTTAAATGGGTGTAGTTTTTTTGGTCAACCCGAGCCACCTGGGCCTTGTACTTGCCCTCTTAGACAAGCTTGGGGTAGCCTCGATGCGCTTATTGGTCGCCTTAGAGCTGCTTACGAAGAAAATGGAGGCTCATCAGACACTAACCCATTTGCTAGTGGTGCTATTAGGGTTTATTTGCGAGAAGTCAAAGACTCTCAGTCTAAAGCAAGAGGAATCCCATATAAGAAGAAGAAGAAAAAGAAGATTCCAACTCACACTCATCAACCAGGTAATCCACTGAATTACCAGTACTCAAATCTCTTTCTTTTCTTATTACTAGTCCGTAAAACGAATATCAACAAATCTCGAGGAAAATTCAAACCTTCAACCTTTAGGAAAGGAACGAGCTGTGCCTTTAACCCTAAAACTATTCTCCCGTCGGTATCAAATGCTTTTCGTTTTAGGTCAAAATCACCTCGATCATATTCAAGACAGTTAA

mRNA sequence

ATGTCGACTAGTAAAGGCAACGATGTTGGTGAAGGATCGTCGTCAAATTCCTCTTCGTCTTCGTCTCTCGTTGCTGTTATCGACGATCGTAATCAAACAGCAGTAGCTCCTGTGAATCGGTACGAATCTCAAAAGAGGAGAGATTGGTACACGTTTGGACAATATTTGAGGAACCAAAGACCTCCATTGGCTATCTCCCAATGCAATTCAAGTCATGTTTTGGATTTCCTTCGATATCTCGACCAATTTGGGAAGACAAAAGTGCATTTAAATGGGTGTAGTTTTTTTGGTCAACCCGAGCCACCTGGGCCTTGTACTTGCCCTCTTAGACAAGCTTGGGGTAGCCTCGATGCGCTTATTGGTCGCCTTAGAGCTGCTTACGAAGAAAATGGAGGCTCATCAGACACTAACCCATTTGCTAGTGGTGCTATTAGGGTTTATTTGCGAGAAGTCAAAGACTCTCAGTCTAAAGCAAGAGGAATCCCATATAAGAAGAAGAAGAAAAAGAAGATTCCAACTCACACTCATCAACCAGGTCAAAATCACCTCGATCATATTCAAGACAGTTAA

Coding sequence (CDS)

ATGTCGACTAGTAAAGGCAACGATGTTGGTGAAGGATCGTCGTCAAATTCCTCTTCGTCTTCGTCTCTCGTTGCTGTTATCGACGATCGTAATCAAACAGCAGTAGCTCCTGTGAATCGGTACGAATCTCAAAAGAGGAGAGATTGGTACACGTTTGGACAATATTTGAGGAACCAAAGACCTCCATTGGCTATCTCCCAATGCAATTCAAGTCATGTTTTGGATTTCCTTCGATATCTCGACCAATTTGGGAAGACAAAAGTGCATTTAAATGGGTGTAGTTTTTTTGGTCAACCCGAGCCACCTGGGCCTTGTACTTGCCCTCTTAGACAAGCTTGGGGTAGCCTCGATGCGCTTATTGGTCGCCTTAGAGCTGCTTACGAAGAAAATGGAGGCTCATCAGACACTAACCCATTTGCTAGTGGTGCTATTAGGGTTTATTTGCGAGAAGTCAAAGACTCTCAGTCTAAAGCAAGAGGAATCCCATATAAGAAGAAGAAGAAAAAGAAGATTCCAACTCACACTCATCAACCAGGTCAAAATCACCTCGATCATATTCAAGACAGTTAA

Protein sequence

MSTSKGNDVGEGSSSNSSSSSSLVAVIDDRNQTAVAPVNRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCSFFGQPEPPGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVKDSQSKARGIPYKKKKKKKIPTHTHQPGQNHLDHIQDS

Homology

[Close]

BLAST of Cp4.1LG06g06460 vs. Swiss-Prot
Match: LSH10_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana GN=LSH10 PE=1 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 4.4e-63
Identity = 110/132 (83.33%), Postives = 122/132 (92.42%), Query Frame = 1


Query: 39  NRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCSFFGQ 98
           +RYESQKRRDW TFGQYL+NQRPP+ +S C+ +HVLDFLRYLDQFGKTKVH+ GC F+GQ
Sbjct: 24  SRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQFGKTKVHVPGCMFYGQ 83

Query: 99  PEPPGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVKDSQSKA 158
           PEPP PCTCPLRQAWGSLDALIGRLRAAYEENGG  +TNPFASGAIRVYLREV++ Q+KA
Sbjct: 84  PEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFASGAIRVYLREVRECQAKA 143

Query: 159 RGIPYKKKKKKK 171
           RGIPYKKKKKKK
Sbjct: 144 RGIPYKKKKKKK 155

[Close]

BLAST of Cp4.1LG06g06460 vs. Swiss-Prot
Match: G1L7_ORYSI (Protein G1-like7 OS=Oryza sativa subsp. indica GN=OsI_10694 PE=3 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 1.4e-58
Identity = 106/161 (65.84%), Postives = 133/161 (82.61%), Query Frame = 1


Query: 10  GEGSSSNSSSSSSLVAVIDDRNQTAVAPVNRYESQKRRDWYTFGQYLRNQRPPLAISQCN 69
           G G SS ++  +  VA          A ++RYESQKRRDW TF QYLRN RPPL +++C+
Sbjct: 5   GPGPSSAAAGGAPAVAAAPQ----PPAQLSRYESQKRRDWNTFLQYLRNHRPPLTLARCS 64

Query: 70  SSHVLDFLRYLDQFGKTKVHLNGCSFFGQPEPPGPCTCPLRQAWGSLDALIGRLRAAYEE 129
            +HV++FLRYLDQFGKTKVH +GC+F+GQP PPGPC CPLRQAWGSLDALIGRLRAAYEE
Sbjct: 65  GAHVIEFLRYLDQFGKTKVHASGCAFYGQPSPPGPCPCPLRQAWGSLDALIGRLRAAYEE 124

Query: 130 NGGSSDTNPFASGAIRVYLREVKDSQSKARGIPYKKKKKKK 171
           +GG+ ++NPFA+ A+R+YLREV+DSQ+KARGIPY+KKK+K+
Sbjct: 125 SGGTPESNPFAARAVRIYLREVRDSQAKARGIPYEKKKRKR 161

[Close]

BLAST of Cp4.1LG06g06460 vs. Swiss-Prot
Match: G1L7_ORYSJ (Protein G1-like7 OS=Oryza sativa subsp. japonica GN=G1L7 PE=1 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 1.4e-58
Identity = 106/161 (65.84%), Postives = 133/161 (82.61%), Query Frame = 1


Query: 10  GEGSSSNSSSSSSLVAVIDDRNQTAVAPVNRYESQKRRDWYTFGQYLRNQRPPLAISQCN 69
           G G SS ++  +  VA          A ++RYESQKRRDW TF QYLRN RPPL +++C+
Sbjct: 5   GPGPSSAAAGGAPAVAAAPQ----PPAQLSRYESQKRRDWNTFLQYLRNHRPPLTLARCS 64

Query: 70  SSHVLDFLRYLDQFGKTKVHLNGCSFFGQPEPPGPCTCPLRQAWGSLDALIGRLRAAYEE 129
            +HV++FLRYLDQFGKTKVH +GC+F+GQP PPGPC CPLRQAWGSLDALIGRLRAAYEE
Sbjct: 65  GAHVIEFLRYLDQFGKTKVHASGCAFYGQPSPPGPCPCPLRQAWGSLDALIGRLRAAYEE 124

Query: 130 NGGSSDTNPFASGAIRVYLREVKDSQSKARGIPYKKKKKKK 171
           +GG+ ++NPFA+ A+R+YLREV+DSQ+KARGIPY+KKK+K+
Sbjct: 125 SGGTPESNPFAARAVRIYLREVRDSQAKARGIPYEKKKRKR 161

[Close]

BLAST of Cp4.1LG06g06460 vs. Swiss-Prot
Match: LSH4_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana GN=LSH4 PE=1 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 9.4e-58
Identity = 107/160 (66.88%), Postives = 131/160 (81.88%), Query Frame = 1


Query: 13  SSSNSSSSSSLVAVIDDRNQTAVAPVNRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSH 72
           ++S+SSSSSS          +    ++RYE+QKRRDW TFGQYLRN RPPL++S+C+ +H
Sbjct: 29  TTSSSSSSSS--------GGSGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAH 88

Query: 73  VLDFLRYLDQFGKTKVHLNGCSFFGQPEPPGPCTCPLRQAWGSLDALIGRLRAAYEENGG 132
           VL+FLRYLDQFGKTKVH + C FFG P PP PC CPLRQAWGSLDALIGRLRAA+EENGG
Sbjct: 89  VLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGG 148

Query: 133 SSDTNPFASGAIRVYLREVKDSQSKARGIPYKKKKKKKIP 173
           S +TNPF + A+R+YLREV+DSQ+KARGI Y+KKK+K+ P
Sbjct: 149 SPETNPFGARAVRLYLREVRDSQAKARGISYEKKKRKRPP 180

[Close]

BLAST of Cp4.1LG06g06460 vs. Swiss-Prot
Match: G1L2_ORYSI (Protein G1-like2 OS=Oryza sativa subsp. indica GN=OsI_24078 PE=3 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.6e-57
Identity = 98/135 (72.59%), Postives = 118/135 (87.41%), Query Frame = 1


Query: 39  NRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCSFFGQ 98
           +RYESQKRRDW+TFGQYLRN RPPL +S+C+ +HVL+FLRYLDQFGKTKVH  GC FFG 
Sbjct: 21  SRYESQKRRDWHTFGQYLRNHRPPLELSRCSGAHVLEFLRYLDQFGKTKVHAAGCPFFGH 80

Query: 99  PEPPGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVKDSQSKA 158
           P PP PC CPLRQAWGSLDAL+GRLRAA+EE+GG  + NPF + A+R+YLREV+DSQ+KA
Sbjct: 81  PSPPAPCPCPLRQAWGSLDALVGRLRAAFEEHGGRPEANPFGARAVRLYLREVRDSQAKA 140

Query: 159 RGIPYKKKKKKKIPT 174
           RGI Y+KK++K+ PT
Sbjct: 141 RGIAYEKKRRKRPPT 155

[Close]

BLAST of Cp4.1LG06g06460 vs. TrEMBL
Match: A0A0A0L028_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G627230 PE=4 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 4.7e-80
Identity = 158/200 (79.00%), Postives = 167/200 (83.50%), Query Frame = 1


Query: 1   MSTSKGNDVGEGSSSNSSSSSS-LVAVIDDRNQ-----------TAVAP---------VN 60
           MS+SKG DV EGSSSNSSSSSS L+ V+DD N               AP         ++
Sbjct: 1   MSSSKGKDVHEGSSSNSSSSSSALIVVVDDHNHHQQQQQFERGDEQAAPTSSVVGAPVIS 60

Query: 61  RYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCSFFGQP 120
           RYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVL+FLRYLDQFGKTKVHLNGC FFG+P
Sbjct: 61  RYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGEP 120

Query: 121 EPPGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVKDSQSKAR 180
           EP GPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREV+DSQSKAR
Sbjct: 121 EPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKAR 180

[Close]

BLAST of Cp4.1LG06g06460 vs. TrEMBL
Match: V4TQP2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022456mg PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 1.2e-70
Identity = 133/171 (77.78%), Postives = 154/171 (90.06%), Query Frame = 1


Query: 1   MSTSKGNDVGEGSSSNSSSSSSLVAVIDDRNQTAVAPVNRYESQKRRDWYTFGQYLRNQR 60
           MS++KG +V EGSSS SS+ ++  AV    +Q + AP++RYESQKRRDW TFGQYLRNQR
Sbjct: 1   MSSNKGKEVAEGSSSRSSTIAT-AAVAAASDQQSPAPLSRYESQKRRDWNTFGQYLRNQR 60

Query: 61  PPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCSFFGQPEPPGPCTCPLRQAWGSLDALI 120
           PP+A+SQCNS+HVLDFLRYLDQFGKTKVHL GC FFGQPEPPGPC+CPL+QAWGSLDALI
Sbjct: 61  PPVALSQCNSNHVLDFLRYLDQFGKTKVHLQGCVFFGQPEPPGPCSCPLKQAWGSLDALI 120

Query: 121 GRLRAAYEENGGSSDTNPFASGAIRVYLREVKDSQSKARGIPYKKKKKKKI 172
           GRLRAAYEENGG  +TNPFASGAIR+YLREV+DSQ+KARGIPYKKKKKK++
Sbjct: 121 GRLRAAYEENGGLPETNPFASGAIRIYLREVRDSQAKARGIPYKKKKKKRM 170

[Close]

BLAST of Cp4.1LG06g06460 vs. TrEMBL
Match: A0A067E7W9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029917mg PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 1.2e-70
Identity = 133/171 (77.78%), Postives = 154/171 (90.06%), Query Frame = 1


Query: 1   MSTSKGNDVGEGSSSNSSSSSSLVAVIDDRNQTAVAPVNRYESQKRRDWYTFGQYLRNQR 60
           MS++KG +V EGSSS SS+ ++  AV    +Q + AP++RYESQKRRDW TFGQYLRNQR
Sbjct: 1   MSSNKGKEVAEGSSSRSSTIAT-AAVAAASDQQSPAPLSRYESQKRRDWNTFGQYLRNQR 60

Query: 61  PPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCSFFGQPEPPGPCTCPLRQAWGSLDALI 120
           PP+A+SQCNS+HVLDFLRYLDQFGKTKVHL GC FFGQPEPPGPC+CPL+QAWGSLDALI
Sbjct: 61  PPVALSQCNSNHVLDFLRYLDQFGKTKVHLQGCVFFGQPEPPGPCSCPLKQAWGSLDALI 120

Query: 121 GRLRAAYEENGGSSDTNPFASGAIRVYLREVKDSQSKARGIPYKKKKKKKI 172
           GRLRAAYEENGG  +TNPFASGAIR+YLREV+DSQ+KARGIPYKKKKKK++
Sbjct: 121 GRLRAAYEENGGLPETNPFASGAIRIYLREVRDSQAKARGIPYKKKKKKRM 170

[Close]

BLAST of Cp4.1LG06g06460 vs. TrEMBL
Match: A0A061F7E6_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_031777 PE=4 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 6.3e-69
Identity = 128/177 (72.32%), Postives = 153/177 (86.44%), Query Frame = 1


Query: 1   MSTSKGNDVGEGSSSNSSSSSSLVAVIDDRNQTAVAPVNRYESQKRRDWYTFGQYLRNQR 60
           MS +KG ++ EGSS +++++ +  A   D+      P++RYESQKRRDW TFGQYLRNQR
Sbjct: 2   MSINKGKEIAEGSSRSTAAAVAAAAAAADQQNPP--PLSRYESQKRRDWNTFGQYLRNQR 61

Query: 61  PPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCSFFGQPEPPGPCTCPLRQAWGSLDALI 120
           PP+A+SQCN++HVL+FLRYLDQFGKTKVHL GC FFGQPEPPGPCTCPLRQAWGSLDALI
Sbjct: 62  PPVALSQCNANHVLEFLRYLDQFGKTKVHLQGCVFFGQPEPPGPCTCPLRQAWGSLDALI 121

Query: 121 GRLRAAYEENGGSSDTNPFASGAIRVYLREVKDSQSKARGIPYKKKKKKKIPTHTHQ 178
           GRLRAAYEENGG  +TNPFASGAIR+YLREV+DSQ+KARGIPYKKKKKK+ P  +++
Sbjct: 122 GRLRAAYEENGGLPETNPFASGAIRIYLREVRDSQAKARGIPYKKKKKKRNPLKSNE 176

[Close]

BLAST of Cp4.1LG06g06460 vs. TrEMBL
Match: M5WHN1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012057mg PE=4 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 8.2e-69
Identity = 133/170 (78.24%), Postives = 148/170 (87.06%), Query Frame = 1


Query: 1   MSTSKGNDVGEGSSSNSSSSSSLVAVIDDRNQTAVAPVNRYESQKRRDWYTFGQYLRNQR 60
           MST+KG DV EGSSS S++++    +     Q   A ++RYESQKRRDW TFGQYLRNQR
Sbjct: 2   MSTNKGKDVAEGSSSASAAAADQQQL----KQAQPAQLSRYESQKRRDWNTFGQYLRNQR 61

Query: 61  PPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCSFFGQPEPPGPCTCPLRQAWGSLDALI 120
           PP+A+SQ NS+HVLDFLRYLDQFGKTKVHL GC FFGQPEPPGPCTCPLRQAWGSLDALI
Sbjct: 62  PPVALSQSNSNHVLDFLRYLDQFGKTKVHLQGCVFFGQPEPPGPCTCPLRQAWGSLDALI 121

Query: 121 GRLRAAYEENGGSSDTNPFASGAIRVYLREVKDSQSKARGIPYKKKKKKK 171
           GRLRAAYEENGG  +TNPFASGAIRVYLREV+DSQ+KARGIPYKKKKKK+
Sbjct: 122 GRLRAAYEENGGLPETNPFASGAIRVYLREVRDSQAKARGIPYKKKKKKR 167

[Close]

BLAST of Cp4.1LG06g06460 vs. TAIR10
Match: AT2G42610.1 (AT2G42610.1 Protein of unknown function (DUF640))

HSP 1 Score: 242.3 bits (617), Expect = 2.5e-64
Identity = 110/132 (83.33%), Postives = 122/132 (92.42%), Query Frame = 1


Query: 39  NRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCSFFGQ 98
           +RYESQKRRDW TFGQYL+NQRPP+ +S C+ +HVLDFLRYLDQFGKTKVH+ GC F+GQ
Sbjct: 24  SRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQFGKTKVHVPGCMFYGQ 83

Query: 99  PEPPGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVKDSQSKA 158
           PEPP PCTCPLRQAWGSLDALIGRLRAAYEENGG  +TNPFASGAIRVYLREV++ Q+KA
Sbjct: 84  PEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFASGAIRVYLREVRECQAKA 143

Query: 159 RGIPYKKKKKKK 171
           RGIPYKKKKKKK
Sbjct: 144 RGIPYKKKKKKK 155

[Close]

BLAST of Cp4.1LG06g06460 vs. TAIR10
Match: AT3G23290.2 (AT3G23290.2 Protein of unknown function (DUF640))

HSP 1 Score: 224.6 bits (571), Expect = 5.3e-59
Identity = 107/160 (66.88%), Postives = 131/160 (81.88%), Query Frame = 1


Query: 13  SSSNSSSSSSLVAVIDDRNQTAVAPVNRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSH 72
           ++S+SSSSSS          +    ++RYE+QKRRDW TFGQYLRN RPPL++S+C+ +H
Sbjct: 29  TTSSSSSSSS--------GGSGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAH 88

Query: 73  VLDFLRYLDQFGKTKVHLNGCSFFGQPEPPGPCTCPLRQAWGSLDALIGRLRAAYEENGG 132
           VL+FLRYLDQFGKTKVH + C FFG P PP PC CPLRQAWGSLDALIGRLRAA+EENGG
Sbjct: 89  VLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGG 148

Query: 133 SSDTNPFASGAIRVYLREVKDSQSKARGIPYKKKKKKKIP 173
           S +TNPF + A+R+YLREV+DSQ+KARGI Y+KKK+K+ P
Sbjct: 149 SPETNPFGARAVRLYLREVRDSQAKARGISYEKKKRKRPP 180

[Close]

BLAST of Cp4.1LG06g06460 vs. TAIR10
Match: AT4G18610.1 (AT4G18610.1 Protein of unknown function (DUF640))

HSP 1 Score: 223.4 bits (568), Expect = 1.2e-58
Identity = 103/135 (76.30%), Postives = 122/135 (90.37%), Query Frame = 1


Query: 37  PVNRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCSFF 96
           P++RYESQKRRDW TF QYL++Q PPL +SQ + +HVL FLRYLDQFGKTKVH   C FF
Sbjct: 34  PLSRYESQKRRDWNTFVQYLKSQNPPLMMSQFDYTHVLSFLRYLDQFGKTKVHHQACVFF 93

Query: 97  GQPEPPGPCTCPLRQAWGSLDALIGRLRAAYEENGGSS-DTNPFASGAIRVYLREVKDSQ 156
           GQP+PPGPCTCPL+QAWGSLDALIGRLRAAYEE+GG S DTNPFA+G+IRV+LREV++SQ
Sbjct: 94  GQPDPPGPCTCPLKQAWGSLDALIGRLRAAYEEHGGGSPDTNPFANGSIRVHLREVRESQ 153

Query: 157 SKARGIPYKKKKKKK 171
           +KARGIPY+KKK++K
Sbjct: 154 AKARGIPYRKKKRRK 168

[Close]

BLAST of Cp4.1LG06g06460 vs. TAIR10
Match: AT1G07090.1 (AT1G07090.1 Protein of unknown function (DUF640))

HSP 1 Score: 223.0 bits (567), Expect = 1.5e-58
Identity = 98/140 (70.00%), Postives = 123/140 (87.86%), Query Frame = 1


Query: 36  APVNRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCSF 95
           A  +RYESQKRRDW TF QYL+N +PPLA+S+C+ +HV++FL+YLDQFGKTKVH+  C +
Sbjct: 27  ATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKTKVHVAACPY 86

Query: 96  FGQPEPPGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVKDSQ 155
           FG  +PP PC+CPL+QAWGSLDALIGRLRAAYEENGG  D+NPFA+ A+R+YLREV++SQ
Sbjct: 87  FGHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRIYLREVRESQ 146

Query: 156 SKARGIPYKKKKKKKIPTHT 176
           +KARGIPY+KKK+K+ PT T
Sbjct: 147 AKARGIPYEKKKRKRPPTVT 166

[Close]

BLAST of Cp4.1LG06g06460 vs. TAIR10
Match: AT1G78815.1 (AT1G78815.1 Protein of unknown function (DUF640))

HSP 1 Score: 221.5 bits (563), Expect = 4.5e-58
Identity = 110/170 (64.71%), Postives = 133/170 (78.24%), Query Frame = 1


Query: 3   TSKGNDVGEGSSSNSSSSSSLVAVIDDRNQTAVAP--VNRYESQKRRDWYTFGQYLRNQR 62
           ++KG  + EGSS   S           + Q+   P  ++RYESQKRRDW TF QYLRNQ+
Sbjct: 5   SNKGKGIAEGSSQPQSQPQPQ----PHQPQSPPNPPALSRYESQKRRDWNTFCQYLRNQQ 64

Query: 63  PPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCSFFGQPEPPGPCTCPLRQAWGSLDALI 122
           PP+ ISQC S+H+LDFL+YLDQFGKTKVH++GC FFGQ EP G C CPL+QAWGSLDALI
Sbjct: 65  PPVHISQCGSNHILDFLQYLDQFGKTKVHIHGCVFFGQVEPAGQCNCPLKQAWGSLDALI 124

Query: 123 GRLRAAYEENGGSSDTNPFASGAIRVYLREVKDSQSKARGIPYKKKKKKK 171
           GRLRAA+EENGG  + NPFA G IRV+LREV+DSQ+KARG+PYKK+KK+K
Sbjct: 125 GRLRAAFEENGGLPERNPFAGGGIRVFLREVRDSQAKARGVPYKKRKKRK 170

[Close]

BLAST of Cp4.1LG06g06460 vs. NCBI nr
Match: gi|659127493|ref|XP_008463732.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo])

HSP 1 Score: 307.0 bits (785), Expect = 2.3e-80
Identity = 159/198 (80.30%), Postives = 169/198 (85.35%), Query Frame = 1


Query: 1   MSTSKGNDVGEGSSSNSSSSSS-LVAVIDDRN-----------------QTAVAPV-NRY 60
           MS+SKG DV EGSSSNSSSSSS L+ V+DD+N                 + A  PV +RY
Sbjct: 1   MSSSKGKDVHEGSSSNSSSSSSALMVVVDDQNHHHHHHQQQQQQFERGDEAAPTPVISRY 60

Query: 61  ESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCSFFGQPEP 120
           ESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVL+FLRYLDQFGKTKVHLNGC FFG+PEP
Sbjct: 61  ESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGEPEP 120

Query: 121 PGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVKDSQSKARGI 180
            GPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREV+DSQSKARGI
Sbjct: 121 AGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKARGI 180

[Close]

BLAST of Cp4.1LG06g06460 vs. NCBI nr
Match: gi|778695750|ref|XP_004146094.2| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis sativus])

HSP 1 Score: 305.4 bits (781), Expect = 6.7e-80
Identity = 158/200 (79.00%), Postives = 167/200 (83.50%), Query Frame = 1


Query: 1   MSTSKGNDVGEGSSSNSSSSSS-LVAVIDDRNQ-----------TAVAP---------VN 60
           MS+SKG DV EGSSSNSSSSSS L+ V+DD N               AP         ++
Sbjct: 1   MSSSKGKDVHEGSSSNSSSSSSALIVVVDDHNHHQQQQQFERGDEQAAPTSSVVGAPVIS 60

Query: 61  RYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCSFFGQP 120
           RYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVL+FLRYLDQFGKTKVHLNGC FFG+P
Sbjct: 61  RYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGEP 120

Query: 121 EPPGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVKDSQSKAR 180
           EP GPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREV+DSQSKAR
Sbjct: 121 EPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKAR 180

[Close]

BLAST of Cp4.1LG06g06460 vs. NCBI nr
Match: gi|567900028|ref|XP_006442502.1| (hypothetical protein CICLE_v10022456mg [Citrus clementina])

HSP 1 Score: 274.2 bits (700), Expect = 1.7e-70
Identity = 133/171 (77.78%), Postives = 154/171 (90.06%), Query Frame = 1


Query: 1   MSTSKGNDVGEGSSSNSSSSSSLVAVIDDRNQTAVAPVNRYESQKRRDWYTFGQYLRNQR 60
           MS++KG +V EGSSS SS+ ++  AV    +Q + AP++RYESQKRRDW TFGQYLRNQR
Sbjct: 1   MSSNKGKEVAEGSSSRSSTIAT-AAVAAASDQQSPAPLSRYESQKRRDWNTFGQYLRNQR 60

Query: 61  PPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCSFFGQPEPPGPCTCPLRQAWGSLDALI 120
           PP+A+SQCNS+HVLDFLRYLDQFGKTKVHL GC FFGQPEPPGPC+CPL+QAWGSLDALI
Sbjct: 61  PPVALSQCNSNHVLDFLRYLDQFGKTKVHLQGCVFFGQPEPPGPCSCPLKQAWGSLDALI 120

Query: 121 GRLRAAYEENGGSSDTNPFASGAIRVYLREVKDSQSKARGIPYKKKKKKKI 172
           GRLRAAYEENGG  +TNPFASGAIR+YLREV+DSQ+KARGIPYKKKKKK++
Sbjct: 121 GRLRAAYEENGGLPETNPFASGAIRIYLREVRDSQAKARGIPYKKKKKKRM 170

[Close]

BLAST of Cp4.1LG06g06460 vs. NCBI nr
Match: gi|645240290|ref|XP_008226537.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Prunus mume])

HSP 1 Score: 269.6 bits (688), Expect = 4.1e-69
Identity = 134/170 (78.82%), Postives = 147/170 (86.47%), Query Frame = 1


Query: 1   MSTSKGNDVGEGSSSNSSSSSSLVAVIDDRNQTAVAPVNRYESQKRRDWYTFGQYLRNQR 60
           MST+KG DV EGS   SS+S++  A      Q   A ++RYESQKRRDW TFGQYLRNQR
Sbjct: 2   MSTNKGKDVAEGS---SSASAAAAADQQQLKQAQPAQLSRYESQKRRDWNTFGQYLRNQR 61

Query: 61  PPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCSFFGQPEPPGPCTCPLRQAWGSLDALI 120
           PP+A+SQ NS+HVLDFLRYLDQFGKTKVHL GC FFGQPEPPGPCTCPLRQAWGSLDALI
Sbjct: 62  PPVALSQSNSNHVLDFLRYLDQFGKTKVHLQGCVFFGQPEPPGPCTCPLRQAWGSLDALI 121

Query: 121 GRLRAAYEENGGSSDTNPFASGAIRVYLREVKDSQSKARGIPYKKKKKKK 171
           GRLRAAYEENGG  +TNPFASGAIRVYLREV+DSQ+KARGIPYKKKKKK+
Sbjct: 122 GRLRAAYEENGGLPETNPFASGAIRVYLREVRDSQAKARGIPYKKKKKKR 168

[Close]

BLAST of Cp4.1LG06g06460 vs. NCBI nr
Match: gi|470115932|ref|XP_004294145.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 268.9 bits (686), Expect = 6.9e-69
Identity = 138/188 (73.40%), Postives = 154/188 (81.91%), Query Frame = 1


Query: 1   MSTSKGNDVGEGSSSNSSSSSSLVAVIDDRNQ----TAVAPVNRYESQKRRDWYTFGQYL 60
           MS++KG DV E SS  SS+++S  A +DD +Q       A ++RYESQKRRDW TFGQYL
Sbjct: 1   MSSNKGKDVAEASS--SSANNSAAAAVDDPDQQQQKQPPAQLSRYESQKRRDWNTFGQYL 60

Query: 61  RNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCSFFGQPEPPGPCTCPLRQAWGSL 120
           RNQRPP+A+SQ NSSHVLDFLRYLDQFGKTKVHL GC FFGQPEPPGPCTCPLRQAWGSL
Sbjct: 61  RNQRPPVALSQSNSSHVLDFLRYLDQFGKTKVHLQGCVFFGQPEPPGPCTCPLRQAWGSL 120

Query: 121 DALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVKDSQSKARGIPYKKKKKKK---IPT 180
           DALIGRLRAAYEENGG  ++NPFASGAIRVYLREV+DSQ+KARGIPYKKKKKK+      
Sbjct: 121 DALIGRLRAAYEENGGLPESNPFASGAIRVYLREVRDSQAKARGIPYKKKKKKRNLIKAN 180

Query: 181 HTHQPGQN 182
           H H    N
Sbjct: 181 HDHSSNPN 186

The following BLAST results are available for this feature:

BLAST of Cp4.1LG06g06460 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LSH10_ARATH	4.4e-63	83.33	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana GN=LSH10 PE=...	[more]
G1L7_ORYSI	1.4e-58	65.84	Protein G1-like7 OS=Oryza sativa subsp. indica GN=OsI_10694 PE=3 SV=1	[more]
G1L7_ORYSJ	1.4e-58	65.84	Protein G1-like7 OS=Oryza sativa subsp. japonica GN=G1L7 PE=1 SV=1	[more]
LSH4_ARATH	9.4e-58	66.88	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana GN=LSH4 PE=1 ...	[more]
G1L2_ORYSI	1.6e-57	72.59	Protein G1-like2 OS=Oryza sativa subsp. indica GN=OsI_24078 PE=3 SV=1	[more]

BLAST of Cp4.1LG06g06460 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L028_CUCSA	4.7e-80	79.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G627230 PE=4 SV=1	[more]
V4TQP2_9ROSI	1.2e-70	77.78	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022456mg PE=4 SV=1	[more]
A0A067E7W9_CITSI	1.2e-70	77.78	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029917mg PE=4 SV=1	[more]
A0A061F7E6_THECC	6.3e-69	72.32	Uncharacterized protein OS=Theobroma cacao GN=TCM_031777 PE=4 SV=1	[more]
M5WHN1_PRUPE	8.2e-69	78.24	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012057mg PE=4 SV=1	[more]

BLAST of Cp4.1LG06g06460 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G42610.1	2.5e-64	83.33	Protein of unknown function (DUF640)	[more]
AT3G23290.2	5.3e-59	66.88	Protein of unknown function (DUF640)	[more]
AT4G18610.1	1.2e-58	76.30	Protein of unknown function (DUF640)	[more]
AT1G07090.1	1.5e-58	70.00	Protein of unknown function (DUF640)	[more]
AT1G78815.1	4.5e-58	64.71	Protein of unknown function (DUF640)	[more]

BLAST of Cp4.1LG06g06460 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659127493\|ref\|XP_008463732.1\|	2.3e-80	80.30	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo]	[more]
gi\|778695750\|ref\|XP_004146094.2\|	6.7e-80	79.00	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis sativus]	[more]
gi\|567900028\|ref\|XP_006442502.1\|	1.7e-70	77.78	hypothetical protein CICLE_v10022456mg [Citrus clementina]	[more]
gi\|645240290\|ref\|XP_008226537.1\|	4.1e-69	78.82	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Prunus mume]	[more]
gi\|470115932\|ref\|XP_004294145.1\|	6.9e-69	73.40	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Fragaria vesca subs...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006936	ALOG_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0009299	mRNA transcription
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG06g06460.1	Cp4.1LG06g06460.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 34..153 score: 7.8
IPR006936	ALOG domain	PROFILE	PS51697	ALOG	coord: 40..167 score: 75
None	No IPR available	PANTHER	PTHR31165	FAMILY NOT NAMED	coord: 12..170 score: 1.7E
None	No IPR available	PANTHER	PTHR31165:SF10	PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-RELATED	coord: 12..170 score: 1.7E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG06g06460	Cucsa.122650	Cucumber (Gy14) v1	cgycpeB0312
Cp4.1LG06g06460	CmaCh01G012450	Cucurbita maxima (Rimu)	cmacpeB506
Cp4.1LG06g06460	CmoCh01G013000	Cucurbita moschata (Rifu)	cmocpeB464
Cp4.1LG06g06460	CmoCh09G008100	Cucurbita moschata (Rifu)	cmocpeB034
Cp4.1LG06g06460	CmoCh13G006300	Cucurbita moschata (Rifu)	cmocpeB215
Cp4.1LG06g06460	Cla023336	Watermelon (97103) v1	cpewmB778
Cp4.1LG06g06460	Csa4G627230	Cucumber (Chinese Long) v2	cpecuB788
Cp4.1LG06g06460	MELO3C025635	Melon (DHL92) v3.5.1	cpemeB739
Cp4.1LG06g06460	ClCG11G017510	Watermelon (Charleston Gray)	cpewcgB697
Cp4.1LG06g06460	CSPI04G22950	Wild cucumber (PI 183967)	cpecpiB791
Cp4.1LG06g06460	Lsi04G020190	Bottle gourd (USVL1VR-Ls)	cpelsiB642
Cp4.1LG06g06460	MELO3C025635.2	Melon (DHL92) v3.6.1	cpemedB871
Cp4.1LG06g06460	CsaV3_4G033170	Cucumber (Chinese Long) v3	cpecucB0976
Cp4.1LG06g06460	Bhi09G002863	Wax gourd	cpewgoB0994
Cp4.1LG06g06460	CsGy4G021360	Cucumber (Gy14) v2	cgybcpeB568
Cp4.1LG06g06460	Carg14730	Silver-seed gourd	carcpeB0433
Cp4.1LG06g06460	Carg17052	Silver-seed gourd	carcpeB0245

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG06g06460	Cp4.1LG09g08130	Cucurbita pepo (Zucchini)	cpecpeB059
Cp4.1LG06g06460	Cp4.1LG02g02020	Cucurbita pepo (Zucchini)	cpecpeB470

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG06g06460	Silver-seed gourd	carcpeB0947
Cp4.1LG06g06460	Wax gourd	cpewgoB0998
Cp4.1LG06g06460	Cucurbita pepo (Zucchini)	cpecpeB468
Cp4.1LG06g06460	Cucurbita maxima (Rimu)	cmacpeB060
Cp4.1LG06g06460	Cucurbita maxima (Rimu)	cmacpeB503
Cp4.1LG06g06460	Cucurbita moschata (Rifu)	cmocpeB461
Cp4.1LG06g06460	Cucurbita moschata (Rifu)	cmocpeB463
Cp4.1LG06g06460	Cucumber (Chinese Long) v2	cpecuB783
Cp4.1LG06g06460	Bottle gourd (USVL1VR-Ls)	cpelsiB637
Cp4.1LG06g06460	Bottle gourd (USVL1VR-Ls)	cpelsiB641
Cp4.1LG06g06460	Watermelon (Charleston Gray)	cpewcgB695
Cp4.1LG06g06460	Watermelon (97103) v1	cpewmB776