Cp4.1LG06g06460 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG06g06460
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionProtein of unknown function (DUF640)
LocationCp4.1LG06 : 4046703 .. 4047447 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGACTAGTAAAGGCAACGATGTTGGTGAAGGATCGTCGTCAAATTCCTCTTCGTCTTCGTCTCTCGTTGCTGTTATCGACGATCGTAATCAAACAGCAGTAGCTCCTGTGAATCGGTACGAATCTCAAAAGAGGAGAGATTGGTACACGTTTGGACAATATTTGAGGAACCAAAGACCTCCATTGGCTATCTCCCAATGCAATTCAAGTCATGTTTTGGATTTCCTTCGATATCTCGACCAATTTGGGAAGACAAAAGTGCATTTAAATGGGTGTAGTTTTTTTGGTCAACCCGAGCCACCTGGGCCTTGTACTTGCCCTCTTAGACAAGCTTGGGGTAGCCTCGATGCGCTTATTGGTCGCCTTAGAGCTGCTTACGAAGAAAATGGAGGCTCATCAGACACTAACCCATTTGCTAGTGGTGCTATTAGGGTTTATTTGCGAGAAGTCAAAGACTCTCAGTCTAAAGCAAGAGGAATCCCATATAAGAAGAAGAAGAAAAAGAAGATTCCAACTCACACTCATCAACCAGGTAATCCACTGAATTACCAGTACTCAAATCTCTTTCTTTTCTTATTACTAGTCCGTAAAACGAATATCAACAAATCTCGAGGAAAATTCAAACCTTCAACCTTTAGGAAAGGAACGAGCTGTGCCTTTAACCCTAAAACTATTCTCCCGTCGGTATCAAATGCTTTTCGTTTTAGGTCAAAATCACCTCGATCATATTCAAGACAGTTAA

mRNA sequence

ATGTCGACTAGTAAAGGCAACGATGTTGGTGAAGGATCGTCGTCAAATTCCTCTTCGTCTTCGTCTCTCGTTGCTGTTATCGACGATCGTAATCAAACAGCAGTAGCTCCTGTGAATCGGTACGAATCTCAAAAGAGGAGAGATTGGTACACGTTTGGACAATATTTGAGGAACCAAAGACCTCCATTGGCTATCTCCCAATGCAATTCAAGTCATGTTTTGGATTTCCTTCGATATCTCGACCAATTTGGGAAGACAAAAGTGCATTTAAATGGGTGTAGTTTTTTTGGTCAACCCGAGCCACCTGGGCCTTGTACTTGCCCTCTTAGACAAGCTTGGGGTAGCCTCGATGCGCTTATTGGTCGCCTTAGAGCTGCTTACGAAGAAAATGGAGGCTCATCAGACACTAACCCATTTGCTAGTGGTGCTATTAGGGTTTATTTGCGAGAAGTCAAAGACTCTCAGTCTAAAGCAAGAGGAATCCCATATAAGAAGAAGAAGAAAAAGAAGATTCCAACTCACACTCATCAACCAGGTCAAAATCACCTCGATCATATTCAAGACAGTTAA

Coding sequence (CDS)

ATGTCGACTAGTAAAGGCAACGATGTTGGTGAAGGATCGTCGTCAAATTCCTCTTCGTCTTCGTCTCTCGTTGCTGTTATCGACGATCGTAATCAAACAGCAGTAGCTCCTGTGAATCGGTACGAATCTCAAAAGAGGAGAGATTGGTACACGTTTGGACAATATTTGAGGAACCAAAGACCTCCATTGGCTATCTCCCAATGCAATTCAAGTCATGTTTTGGATTTCCTTCGATATCTCGACCAATTTGGGAAGACAAAAGTGCATTTAAATGGGTGTAGTTTTTTTGGTCAACCCGAGCCACCTGGGCCTTGTACTTGCCCTCTTAGACAAGCTTGGGGTAGCCTCGATGCGCTTATTGGTCGCCTTAGAGCTGCTTACGAAGAAAATGGAGGCTCATCAGACACTAACCCATTTGCTAGTGGTGCTATTAGGGTTTATTTGCGAGAAGTCAAAGACTCTCAGTCTAAAGCAAGAGGAATCCCATATAAGAAGAAGAAGAAAAAGAAGATTCCAACTCACACTCATCAACCAGGTCAAAATCACCTCGATCATATTCAAGACAGTTAA

Protein sequence

MSTSKGNDVGEGSSSNSSSSSSLVAVIDDRNQTAVAPVNRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCSFFGQPEPPGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVKDSQSKARGIPYKKKKKKKIPTHTHQPGQNHLDHIQDS
BLAST of Cp4.1LG06g06460 vs. Swiss-Prot
Match: LSH10_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana GN=LSH10 PE=1 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 4.4e-63
Identity = 110/132 (83.33%), Postives = 122/132 (92.42%), Query Frame = 1

Query: 39  NRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCSFFGQ 98
           +RYESQKRRDW TFGQYL+NQRPP+ +S C+ +HVLDFLRYLDQFGKTKVH+ GC F+GQ
Sbjct: 24  SRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQFGKTKVHVPGCMFYGQ 83

Query: 99  PEPPGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVKDSQSKA 158
           PEPP PCTCPLRQAWGSLDALIGRLRAAYEENGG  +TNPFASGAIRVYLREV++ Q+KA
Sbjct: 84  PEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFASGAIRVYLREVRECQAKA 143

Query: 159 RGIPYKKKKKKK 171
           RGIPYKKKKKKK
Sbjct: 144 RGIPYKKKKKKK 155

BLAST of Cp4.1LG06g06460 vs. Swiss-Prot
Match: G1L7_ORYSI (Protein G1-like7 OS=Oryza sativa subsp. indica GN=OsI_10694 PE=3 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 1.4e-58
Identity = 106/161 (65.84%), Postives = 133/161 (82.61%), Query Frame = 1

Query: 10  GEGSSSNSSSSSSLVAVIDDRNQTAVAPVNRYESQKRRDWYTFGQYLRNQRPPLAISQCN 69
           G G SS ++  +  VA          A ++RYESQKRRDW TF QYLRN RPPL +++C+
Sbjct: 5   GPGPSSAAAGGAPAVAAAPQ----PPAQLSRYESQKRRDWNTFLQYLRNHRPPLTLARCS 64

Query: 70  SSHVLDFLRYLDQFGKTKVHLNGCSFFGQPEPPGPCTCPLRQAWGSLDALIGRLRAAYEE 129
            +HV++FLRYLDQFGKTKVH +GC+F+GQP PPGPC CPLRQAWGSLDALIGRLRAAYEE
Sbjct: 65  GAHVIEFLRYLDQFGKTKVHASGCAFYGQPSPPGPCPCPLRQAWGSLDALIGRLRAAYEE 124

Query: 130 NGGSSDTNPFASGAIRVYLREVKDSQSKARGIPYKKKKKKK 171
           +GG+ ++NPFA+ A+R+YLREV+DSQ+KARGIPY+KKK+K+
Sbjct: 125 SGGTPESNPFAARAVRIYLREVRDSQAKARGIPYEKKKRKR 161

BLAST of Cp4.1LG06g06460 vs. Swiss-Prot
Match: G1L7_ORYSJ (Protein G1-like7 OS=Oryza sativa subsp. japonica GN=G1L7 PE=1 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 1.4e-58
Identity = 106/161 (65.84%), Postives = 133/161 (82.61%), Query Frame = 1

Query: 10  GEGSSSNSSSSSSLVAVIDDRNQTAVAPVNRYESQKRRDWYTFGQYLRNQRPPLAISQCN 69
           G G SS ++  +  VA          A ++RYESQKRRDW TF QYLRN RPPL +++C+
Sbjct: 5   GPGPSSAAAGGAPAVAAAPQ----PPAQLSRYESQKRRDWNTFLQYLRNHRPPLTLARCS 64

Query: 70  SSHVLDFLRYLDQFGKTKVHLNGCSFFGQPEPPGPCTCPLRQAWGSLDALIGRLRAAYEE 129
            +HV++FLRYLDQFGKTKVH +GC+F+GQP PPGPC CPLRQAWGSLDALIGRLRAAYEE
Sbjct: 65  GAHVIEFLRYLDQFGKTKVHASGCAFYGQPSPPGPCPCPLRQAWGSLDALIGRLRAAYEE 124

Query: 130 NGGSSDTNPFASGAIRVYLREVKDSQSKARGIPYKKKKKKK 171
           +GG+ ++NPFA+ A+R+YLREV+DSQ+KARGIPY+KKK+K+
Sbjct: 125 SGGTPESNPFAARAVRIYLREVRDSQAKARGIPYEKKKRKR 161

BLAST of Cp4.1LG06g06460 vs. Swiss-Prot
Match: LSH4_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana GN=LSH4 PE=1 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 9.4e-58
Identity = 107/160 (66.88%), Postives = 131/160 (81.88%), Query Frame = 1

Query: 13  SSSNSSSSSSLVAVIDDRNQTAVAPVNRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSH 72
           ++S+SSSSSS          +    ++RYE+QKRRDW TFGQYLRN RPPL++S+C+ +H
Sbjct: 29  TTSSSSSSSS--------GGSGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAH 88

Query: 73  VLDFLRYLDQFGKTKVHLNGCSFFGQPEPPGPCTCPLRQAWGSLDALIGRLRAAYEENGG 132
           VL+FLRYLDQFGKTKVH + C FFG P PP PC CPLRQAWGSLDALIGRLRAA+EENGG
Sbjct: 89  VLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGG 148

Query: 133 SSDTNPFASGAIRVYLREVKDSQSKARGIPYKKKKKKKIP 173
           S +TNPF + A+R+YLREV+DSQ+KARGI Y+KKK+K+ P
Sbjct: 149 SPETNPFGARAVRLYLREVRDSQAKARGISYEKKKRKRPP 180

BLAST of Cp4.1LG06g06460 vs. Swiss-Prot
Match: G1L2_ORYSI (Protein G1-like2 OS=Oryza sativa subsp. indica GN=OsI_24078 PE=3 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.6e-57
Identity = 98/135 (72.59%), Postives = 118/135 (87.41%), Query Frame = 1

Query: 39  NRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCSFFGQ 98
           +RYESQKRRDW+TFGQYLRN RPPL +S+C+ +HVL+FLRYLDQFGKTKVH  GC FFG 
Sbjct: 21  SRYESQKRRDWHTFGQYLRNHRPPLELSRCSGAHVLEFLRYLDQFGKTKVHAAGCPFFGH 80

Query: 99  PEPPGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVKDSQSKA 158
           P PP PC CPLRQAWGSLDAL+GRLRAA+EE+GG  + NPF + A+R+YLREV+DSQ+KA
Sbjct: 81  PSPPAPCPCPLRQAWGSLDALVGRLRAAFEEHGGRPEANPFGARAVRLYLREVRDSQAKA 140

Query: 159 RGIPYKKKKKKKIPT 174
           RGI Y+KK++K+ PT
Sbjct: 141 RGIAYEKKRRKRPPT 155

BLAST of Cp4.1LG06g06460 vs. TrEMBL
Match: A0A0A0L028_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G627230 PE=4 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 4.7e-80
Identity = 158/200 (79.00%), Postives = 167/200 (83.50%), Query Frame = 1

Query: 1   MSTSKGNDVGEGSSSNSSSSSS-LVAVIDDRNQ-----------TAVAP---------VN 60
           MS+SKG DV EGSSSNSSSSSS L+ V+DD N               AP         ++
Sbjct: 1   MSSSKGKDVHEGSSSNSSSSSSALIVVVDDHNHHQQQQQFERGDEQAAPTSSVVGAPVIS 60

Query: 61  RYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCSFFGQP 120
           RYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVL+FLRYLDQFGKTKVHLNGC FFG+P
Sbjct: 61  RYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGEP 120

Query: 121 EPPGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVKDSQSKAR 180
           EP GPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREV+DSQSKAR
Sbjct: 121 EPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKAR 180

BLAST of Cp4.1LG06g06460 vs. TrEMBL
Match: V4TQP2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022456mg PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 1.2e-70
Identity = 133/171 (77.78%), Postives = 154/171 (90.06%), Query Frame = 1

Query: 1   MSTSKGNDVGEGSSSNSSSSSSLVAVIDDRNQTAVAPVNRYESQKRRDWYTFGQYLRNQR 60
           MS++KG +V EGSSS SS+ ++  AV    +Q + AP++RYESQKRRDW TFGQYLRNQR
Sbjct: 1   MSSNKGKEVAEGSSSRSSTIAT-AAVAAASDQQSPAPLSRYESQKRRDWNTFGQYLRNQR 60

Query: 61  PPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCSFFGQPEPPGPCTCPLRQAWGSLDALI 120
           PP+A+SQCNS+HVLDFLRYLDQFGKTKVHL GC FFGQPEPPGPC+CPL+QAWGSLDALI
Sbjct: 61  PPVALSQCNSNHVLDFLRYLDQFGKTKVHLQGCVFFGQPEPPGPCSCPLKQAWGSLDALI 120

Query: 121 GRLRAAYEENGGSSDTNPFASGAIRVYLREVKDSQSKARGIPYKKKKKKKI 172
           GRLRAAYEENGG  +TNPFASGAIR+YLREV+DSQ+KARGIPYKKKKKK++
Sbjct: 121 GRLRAAYEENGGLPETNPFASGAIRIYLREVRDSQAKARGIPYKKKKKKRM 170

BLAST of Cp4.1LG06g06460 vs. TrEMBL
Match: A0A067E7W9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029917mg PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 1.2e-70
Identity = 133/171 (77.78%), Postives = 154/171 (90.06%), Query Frame = 1

Query: 1   MSTSKGNDVGEGSSSNSSSSSSLVAVIDDRNQTAVAPVNRYESQKRRDWYTFGQYLRNQR 60
           MS++KG +V EGSSS SS+ ++  AV    +Q + AP++RYESQKRRDW TFGQYLRNQR
Sbjct: 1   MSSNKGKEVAEGSSSRSSTIAT-AAVAAASDQQSPAPLSRYESQKRRDWNTFGQYLRNQR 60

Query: 61  PPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCSFFGQPEPPGPCTCPLRQAWGSLDALI 120
           PP+A+SQCNS+HVLDFLRYLDQFGKTKVHL GC FFGQPEPPGPC+CPL+QAWGSLDALI
Sbjct: 61  PPVALSQCNSNHVLDFLRYLDQFGKTKVHLQGCVFFGQPEPPGPCSCPLKQAWGSLDALI 120

Query: 121 GRLRAAYEENGGSSDTNPFASGAIRVYLREVKDSQSKARGIPYKKKKKKKI 172
           GRLRAAYEENGG  +TNPFASGAIR+YLREV+DSQ+KARGIPYKKKKKK++
Sbjct: 121 GRLRAAYEENGGLPETNPFASGAIRIYLREVRDSQAKARGIPYKKKKKKRM 170

BLAST of Cp4.1LG06g06460 vs. TrEMBL
Match: A0A061F7E6_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_031777 PE=4 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 6.3e-69
Identity = 128/177 (72.32%), Postives = 153/177 (86.44%), Query Frame = 1

Query: 1   MSTSKGNDVGEGSSSNSSSSSSLVAVIDDRNQTAVAPVNRYESQKRRDWYTFGQYLRNQR 60
           MS +KG ++ EGSS +++++ +  A   D+      P++RYESQKRRDW TFGQYLRNQR
Sbjct: 2   MSINKGKEIAEGSSRSTAAAVAAAAAAADQQNPP--PLSRYESQKRRDWNTFGQYLRNQR 61

Query: 61  PPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCSFFGQPEPPGPCTCPLRQAWGSLDALI 120
           PP+A+SQCN++HVL+FLRYLDQFGKTKVHL GC FFGQPEPPGPCTCPLRQAWGSLDALI
Sbjct: 62  PPVALSQCNANHVLEFLRYLDQFGKTKVHLQGCVFFGQPEPPGPCTCPLRQAWGSLDALI 121

Query: 121 GRLRAAYEENGGSSDTNPFASGAIRVYLREVKDSQSKARGIPYKKKKKKKIPTHTHQ 178
           GRLRAAYEENGG  +TNPFASGAIR+YLREV+DSQ+KARGIPYKKKKKK+ P  +++
Sbjct: 122 GRLRAAYEENGGLPETNPFASGAIRIYLREVRDSQAKARGIPYKKKKKKRNPLKSNE 176

BLAST of Cp4.1LG06g06460 vs. TrEMBL
Match: M5WHN1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012057mg PE=4 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 8.2e-69
Identity = 133/170 (78.24%), Postives = 148/170 (87.06%), Query Frame = 1

Query: 1   MSTSKGNDVGEGSSSNSSSSSSLVAVIDDRNQTAVAPVNRYESQKRRDWYTFGQYLRNQR 60
           MST+KG DV EGSSS S++++    +     Q   A ++RYESQKRRDW TFGQYLRNQR
Sbjct: 2   MSTNKGKDVAEGSSSASAAAADQQQL----KQAQPAQLSRYESQKRRDWNTFGQYLRNQR 61

Query: 61  PPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCSFFGQPEPPGPCTCPLRQAWGSLDALI 120
           PP+A+SQ NS+HVLDFLRYLDQFGKTKVHL GC FFGQPEPPGPCTCPLRQAWGSLDALI
Sbjct: 62  PPVALSQSNSNHVLDFLRYLDQFGKTKVHLQGCVFFGQPEPPGPCTCPLRQAWGSLDALI 121

Query: 121 GRLRAAYEENGGSSDTNPFASGAIRVYLREVKDSQSKARGIPYKKKKKKK 171
           GRLRAAYEENGG  +TNPFASGAIRVYLREV+DSQ+KARGIPYKKKKKK+
Sbjct: 122 GRLRAAYEENGGLPETNPFASGAIRVYLREVRDSQAKARGIPYKKKKKKR 167

BLAST of Cp4.1LG06g06460 vs. TAIR10
Match: AT2G42610.1 (AT2G42610.1 Protein of unknown function (DUF640))

HSP 1 Score: 242.3 bits (617), Expect = 2.5e-64
Identity = 110/132 (83.33%), Postives = 122/132 (92.42%), Query Frame = 1

Query: 39  NRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCSFFGQ 98
           +RYESQKRRDW TFGQYL+NQRPP+ +S C+ +HVLDFLRYLDQFGKTKVH+ GC F+GQ
Sbjct: 24  SRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQFGKTKVHVPGCMFYGQ 83

Query: 99  PEPPGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVKDSQSKA 158
           PEPP PCTCPLRQAWGSLDALIGRLRAAYEENGG  +TNPFASGAIRVYLREV++ Q+KA
Sbjct: 84  PEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFASGAIRVYLREVRECQAKA 143

Query: 159 RGIPYKKKKKKK 171
           RGIPYKKKKKKK
Sbjct: 144 RGIPYKKKKKKK 155

BLAST of Cp4.1LG06g06460 vs. TAIR10
Match: AT3G23290.2 (AT3G23290.2 Protein of unknown function (DUF640))

HSP 1 Score: 224.6 bits (571), Expect = 5.3e-59
Identity = 107/160 (66.88%), Postives = 131/160 (81.88%), Query Frame = 1

Query: 13  SSSNSSSSSSLVAVIDDRNQTAVAPVNRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSH 72
           ++S+SSSSSS          +    ++RYE+QKRRDW TFGQYLRN RPPL++S+C+ +H
Sbjct: 29  TTSSSSSSSS--------GGSGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAH 88

Query: 73  VLDFLRYLDQFGKTKVHLNGCSFFGQPEPPGPCTCPLRQAWGSLDALIGRLRAAYEENGG 132
           VL+FLRYLDQFGKTKVH + C FFG P PP PC CPLRQAWGSLDALIGRLRAA+EENGG
Sbjct: 89  VLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGG 148

Query: 133 SSDTNPFASGAIRVYLREVKDSQSKARGIPYKKKKKKKIP 173
           S +TNPF + A+R+YLREV+DSQ+KARGI Y+KKK+K+ P
Sbjct: 149 SPETNPFGARAVRLYLREVRDSQAKARGISYEKKKRKRPP 180

BLAST of Cp4.1LG06g06460 vs. TAIR10
Match: AT4G18610.1 (AT4G18610.1 Protein of unknown function (DUF640))

HSP 1 Score: 223.4 bits (568), Expect = 1.2e-58
Identity = 103/135 (76.30%), Postives = 122/135 (90.37%), Query Frame = 1

Query: 37  PVNRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCSFF 96
           P++RYESQKRRDW TF QYL++Q PPL +SQ + +HVL FLRYLDQFGKTKVH   C FF
Sbjct: 34  PLSRYESQKRRDWNTFVQYLKSQNPPLMMSQFDYTHVLSFLRYLDQFGKTKVHHQACVFF 93

Query: 97  GQPEPPGPCTCPLRQAWGSLDALIGRLRAAYEENGGSS-DTNPFASGAIRVYLREVKDSQ 156
           GQP+PPGPCTCPL+QAWGSLDALIGRLRAAYEE+GG S DTNPFA+G+IRV+LREV++SQ
Sbjct: 94  GQPDPPGPCTCPLKQAWGSLDALIGRLRAAYEEHGGGSPDTNPFANGSIRVHLREVRESQ 153

Query: 157 SKARGIPYKKKKKKK 171
           +KARGIPY+KKK++K
Sbjct: 154 AKARGIPYRKKKRRK 168

BLAST of Cp4.1LG06g06460 vs. TAIR10
Match: AT1G07090.1 (AT1G07090.1 Protein of unknown function (DUF640))

HSP 1 Score: 223.0 bits (567), Expect = 1.5e-58
Identity = 98/140 (70.00%), Postives = 123/140 (87.86%), Query Frame = 1

Query: 36  APVNRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCSF 95
           A  +RYESQKRRDW TF QYL+N +PPLA+S+C+ +HV++FL+YLDQFGKTKVH+  C +
Sbjct: 27  ATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKTKVHVAACPY 86

Query: 96  FGQPEPPGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVKDSQ 155
           FG  +PP PC+CPL+QAWGSLDALIGRLRAAYEENGG  D+NPFA+ A+R+YLREV++SQ
Sbjct: 87  FGHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRIYLREVRESQ 146

Query: 156 SKARGIPYKKKKKKKIPTHT 176
           +KARGIPY+KKK+K+ PT T
Sbjct: 147 AKARGIPYEKKKRKRPPTVT 166

BLAST of Cp4.1LG06g06460 vs. TAIR10
Match: AT1G78815.1 (AT1G78815.1 Protein of unknown function (DUF640))

HSP 1 Score: 221.5 bits (563), Expect = 4.5e-58
Identity = 110/170 (64.71%), Postives = 133/170 (78.24%), Query Frame = 1

Query: 3   TSKGNDVGEGSSSNSSSSSSLVAVIDDRNQTAVAP--VNRYESQKRRDWYTFGQYLRNQR 62
           ++KG  + EGSS   S           + Q+   P  ++RYESQKRRDW TF QYLRNQ+
Sbjct: 5   SNKGKGIAEGSSQPQSQPQPQ----PHQPQSPPNPPALSRYESQKRRDWNTFCQYLRNQQ 64

Query: 63  PPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCSFFGQPEPPGPCTCPLRQAWGSLDALI 122
           PP+ ISQC S+H+LDFL+YLDQFGKTKVH++GC FFGQ EP G C CPL+QAWGSLDALI
Sbjct: 65  PPVHISQCGSNHILDFLQYLDQFGKTKVHIHGCVFFGQVEPAGQCNCPLKQAWGSLDALI 124

Query: 123 GRLRAAYEENGGSSDTNPFASGAIRVYLREVKDSQSKARGIPYKKKKKKK 171
           GRLRAA+EENGG  + NPFA G IRV+LREV+DSQ+KARG+PYKK+KK+K
Sbjct: 125 GRLRAAFEENGGLPERNPFAGGGIRVFLREVRDSQAKARGVPYKKRKKRK 170

BLAST of Cp4.1LG06g06460 vs. NCBI nr
Match: gi|659127493|ref|XP_008463732.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo])

HSP 1 Score: 307.0 bits (785), Expect = 2.3e-80
Identity = 159/198 (80.30%), Postives = 169/198 (85.35%), Query Frame = 1

Query: 1   MSTSKGNDVGEGSSSNSSSSSS-LVAVIDDRN-----------------QTAVAPV-NRY 60
           MS+SKG DV EGSSSNSSSSSS L+ V+DD+N                 + A  PV +RY
Sbjct: 1   MSSSKGKDVHEGSSSNSSSSSSALMVVVDDQNHHHHHHQQQQQQFERGDEAAPTPVISRY 60

Query: 61  ESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCSFFGQPEP 120
           ESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVL+FLRYLDQFGKTKVHLNGC FFG+PEP
Sbjct: 61  ESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGEPEP 120

Query: 121 PGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVKDSQSKARGI 180
            GPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREV+DSQSKARGI
Sbjct: 121 AGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKARGI 180

BLAST of Cp4.1LG06g06460 vs. NCBI nr
Match: gi|778695750|ref|XP_004146094.2| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis sativus])

HSP 1 Score: 305.4 bits (781), Expect = 6.7e-80
Identity = 158/200 (79.00%), Postives = 167/200 (83.50%), Query Frame = 1

Query: 1   MSTSKGNDVGEGSSSNSSSSSS-LVAVIDDRNQ-----------TAVAP---------VN 60
           MS+SKG DV EGSSSNSSSSSS L+ V+DD N               AP         ++
Sbjct: 1   MSSSKGKDVHEGSSSNSSSSSSALIVVVDDHNHHQQQQQFERGDEQAAPTSSVVGAPVIS 60

Query: 61  RYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCSFFGQP 120
           RYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVL+FLRYLDQFGKTKVHLNGC FFG+P
Sbjct: 61  RYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGEP 120

Query: 121 EPPGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVKDSQSKAR 180
           EP GPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREV+DSQSKAR
Sbjct: 121 EPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKAR 180

BLAST of Cp4.1LG06g06460 vs. NCBI nr
Match: gi|567900028|ref|XP_006442502.1| (hypothetical protein CICLE_v10022456mg [Citrus clementina])

HSP 1 Score: 274.2 bits (700), Expect = 1.7e-70
Identity = 133/171 (77.78%), Postives = 154/171 (90.06%), Query Frame = 1

Query: 1   MSTSKGNDVGEGSSSNSSSSSSLVAVIDDRNQTAVAPVNRYESQKRRDWYTFGQYLRNQR 60
           MS++KG +V EGSSS SS+ ++  AV    +Q + AP++RYESQKRRDW TFGQYLRNQR
Sbjct: 1   MSSNKGKEVAEGSSSRSSTIAT-AAVAAASDQQSPAPLSRYESQKRRDWNTFGQYLRNQR 60

Query: 61  PPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCSFFGQPEPPGPCTCPLRQAWGSLDALI 120
           PP+A+SQCNS+HVLDFLRYLDQFGKTKVHL GC FFGQPEPPGPC+CPL+QAWGSLDALI
Sbjct: 61  PPVALSQCNSNHVLDFLRYLDQFGKTKVHLQGCVFFGQPEPPGPCSCPLKQAWGSLDALI 120

Query: 121 GRLRAAYEENGGSSDTNPFASGAIRVYLREVKDSQSKARGIPYKKKKKKKI 172
           GRLRAAYEENGG  +TNPFASGAIR+YLREV+DSQ+KARGIPYKKKKKK++
Sbjct: 121 GRLRAAYEENGGLPETNPFASGAIRIYLREVRDSQAKARGIPYKKKKKKRM 170

BLAST of Cp4.1LG06g06460 vs. NCBI nr
Match: gi|645240290|ref|XP_008226537.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Prunus mume])

HSP 1 Score: 269.6 bits (688), Expect = 4.1e-69
Identity = 134/170 (78.82%), Postives = 147/170 (86.47%), Query Frame = 1

Query: 1   MSTSKGNDVGEGSSSNSSSSSSLVAVIDDRNQTAVAPVNRYESQKRRDWYTFGQYLRNQR 60
           MST+KG DV EGS   SS+S++  A      Q   A ++RYESQKRRDW TFGQYLRNQR
Sbjct: 2   MSTNKGKDVAEGS---SSASAAAAADQQQLKQAQPAQLSRYESQKRRDWNTFGQYLRNQR 61

Query: 61  PPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCSFFGQPEPPGPCTCPLRQAWGSLDALI 120
           PP+A+SQ NS+HVLDFLRYLDQFGKTKVHL GC FFGQPEPPGPCTCPLRQAWGSLDALI
Sbjct: 62  PPVALSQSNSNHVLDFLRYLDQFGKTKVHLQGCVFFGQPEPPGPCTCPLRQAWGSLDALI 121

Query: 121 GRLRAAYEENGGSSDTNPFASGAIRVYLREVKDSQSKARGIPYKKKKKKK 171
           GRLRAAYEENGG  +TNPFASGAIRVYLREV+DSQ+KARGIPYKKKKKK+
Sbjct: 122 GRLRAAYEENGGLPETNPFASGAIRVYLREVRDSQAKARGIPYKKKKKKR 168

BLAST of Cp4.1LG06g06460 vs. NCBI nr
Match: gi|470115932|ref|XP_004294145.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 268.9 bits (686), Expect = 6.9e-69
Identity = 138/188 (73.40%), Postives = 154/188 (81.91%), Query Frame = 1

Query: 1   MSTSKGNDVGEGSSSNSSSSSSLVAVIDDRNQ----TAVAPVNRYESQKRRDWYTFGQYL 60
           MS++KG DV E SS  SS+++S  A +DD +Q       A ++RYESQKRRDW TFGQYL
Sbjct: 1   MSSNKGKDVAEASS--SSANNSAAAAVDDPDQQQQKQPPAQLSRYESQKRRDWNTFGQYL 60

Query: 61  RNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCSFFGQPEPPGPCTCPLRQAWGSL 120
           RNQRPP+A+SQ NSSHVLDFLRYLDQFGKTKVHL GC FFGQPEPPGPCTCPLRQAWGSL
Sbjct: 61  RNQRPPVALSQSNSSHVLDFLRYLDQFGKTKVHLQGCVFFGQPEPPGPCTCPLRQAWGSL 120

Query: 121 DALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVKDSQSKARGIPYKKKKKKK---IPT 180
           DALIGRLRAAYEENGG  ++NPFASGAIRVYLREV+DSQ+KARGIPYKKKKKK+      
Sbjct: 121 DALIGRLRAAYEENGGLPESNPFASGAIRVYLREVRDSQAKARGIPYKKKKKKRNLIKAN 180

Query: 181 HTHQPGQN 182
           H H    N
Sbjct: 181 HDHSSNPN 186

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
LSH10_ARATH4.4e-6383.33Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana GN=LSH10 PE=... [more]
G1L7_ORYSI1.4e-5865.84Protein G1-like7 OS=Oryza sativa subsp. indica GN=OsI_10694 PE=3 SV=1[more]
G1L7_ORYSJ1.4e-5865.84Protein G1-like7 OS=Oryza sativa subsp. japonica GN=G1L7 PE=1 SV=1[more]
LSH4_ARATH9.4e-5866.88Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana GN=LSH4 PE=1 ... [more]
G1L2_ORYSI1.6e-5772.59Protein G1-like2 OS=Oryza sativa subsp. indica GN=OsI_24078 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0L028_CUCSA4.7e-8079.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G627230 PE=4 SV=1[more]
V4TQP2_9ROSI1.2e-7077.78Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022456mg PE=4 SV=1[more]
A0A067E7W9_CITSI1.2e-7077.78Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029917mg PE=4 SV=1[more]
A0A061F7E6_THECC6.3e-6972.32Uncharacterized protein OS=Theobroma cacao GN=TCM_031777 PE=4 SV=1[more]
M5WHN1_PRUPE8.2e-6978.24Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012057mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G42610.12.5e-6483.33 Protein of unknown function (DUF640)[more]
AT3G23290.25.3e-5966.88 Protein of unknown function (DUF640)[more]
AT4G18610.11.2e-5876.30 Protein of unknown function (DUF640)[more]
AT1G07090.11.5e-5870.00 Protein of unknown function (DUF640)[more]
AT1G78815.14.5e-5864.71 Protein of unknown function (DUF640)[more]
Match NameE-valueIdentityDescription
gi|659127493|ref|XP_008463732.1|2.3e-8080.30PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo][more]
gi|778695750|ref|XP_004146094.2|6.7e-8079.00PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis sativus][more]
gi|567900028|ref|XP_006442502.1|1.7e-7077.78hypothetical protein CICLE_v10022456mg [Citrus clementina][more]
gi|645240290|ref|XP_008226537.1|4.1e-6978.82PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Prunus mume][more]
gi|470115932|ref|XP_004294145.1|6.9e-6973.40PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Fragaria vesca subs... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006936ALOG_dom
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0009299 mRNA transcription
biological_process GO:0009416 response to light stimulus
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG06g06460.1Cp4.1LG06g06460.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006936ALOG domainPFAMPF04852DUF640coord: 34..153
score: 7.8
IPR006936ALOG domainPROFILEPS51697ALOGcoord: 40..167
score: 75
NoneNo IPR availablePANTHERPTHR31165FAMILY NOT NAMEDcoord: 12..170
score: 1.7E
NoneNo IPR availablePANTHERPTHR31165:SF10PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-RELATEDcoord: 12..170
score: 1.7E

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG06g06460Cp4.1LG09g08130Cucurbita pepo (Zucchini)cpecpeB059
Cp4.1LG06g06460Cp4.1LG02g02020Cucurbita pepo (Zucchini)cpecpeB470