CsGy4G013920 (gene) Cucumber (Gy14) v2

Overview
NameCsGy4G013920
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionHistone H2A
LocationChr4 : 18853871 .. 18856678 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GCGATGTGTCCATGTCATCACGAACACGGCGTGTGTCATTCACTTTCCATTTTATTTTTCTCATTTCATAAGAAAAAATGTCATCTCCGTTGAAACCCCGTCGTCGTTAACCTCCCTCACCTTTTCATCTCTTTTTTCTGTTTGTTTCCCCGGAAAATTTTCTCTTCCAATGGATTCTGGCGGCAAGGCGAAGAAAGGCTTCGCCGGCAGACGAGGTGGTGCCGATTCTAAGAAGAAGCCTGTCTCTCGCTCTGTCAAAGCCGGCCTCCAGTTTCCCGTTGGCAGAATCGGCCGCTACTTGAAGAATGGCCGTTACTCTCAACGAGTCGGAACTGGCGCTCCGGTTTACCTTGCTGCTGTGCTTGAGTACCTCGCTGCTGAGGTGAATACTACTACTTCGTTCTCTCAGTTTGTGACTTTCGATTTACTTAATTTAGGGTTTCTTTTTTCAGTTTCTGTTGGAGGATTTTACATGTTTTGATTGTATGTGTGAAATCTGATCGTTTATTCATGGATTATATGCTTGGATTGAAGTGCATTTTCTTTATTTCTTGTTAATGACTTAGAATTTGATTTTCTTACCTCTTTCTCTTCATTTATAAAATCCCTAATTTAATGGAATTTGTTATTATTATTATTTATGAAATCTATTCTCTGATTTCTCTATGTGGTTTTGTGTACATAGACAAGTTCATTCTTGACAATCTAGAAAGGAAAAAATCACCTAAGGTTTTTTTTCAAAAAAAAAAAATACAATTTTAAGGTCTTTCTTAATATCGATTTCACTTTTTTTAGCTTTTTATTTTTAAAATTAAGCTTATAAACCTTCCTTTCATTTGTAAGATCGCGTTTGGTAACCACATTTTGTTTTTTTGTTCTTGGTTTTTTGAAAATTAAGCCAATTGACTCTCATAATCTTAGGATGGTAAAGTTTAAAATCGTCGTCAAATTCTAAAAACAAAATCTACATTCTTTTAGTTTCAAATTTTAGGTTGGTTTTCTCAAAATGTAGCCAACAAAACTTAGAAACCAATGAATGAAAGTAGGATTTGTAGGTATAATTTTTAAAAACCAAATGATTAGCAAACAGAACTTAAATTTTCTGATGGGTTCTTACTTTTTACCAATATTTTAAAAACGATTCTCAAGTATTTAATTTTTCTTTAAAAAAAGTCATTTAAAATTTTTTATAGTGTTTGGTAACCACTCATACCAACTTTTTTTAAGGTATTTTAAACCATTTTTATCTAAAAGAAAATTAAACAAAAATTAGCTTTGGAAAAATACTTTTTAATTTGACCAAGAATTCTACAAGATGTAATAGTTTTTATTTTCAAAAATAAAAAGTGAAAAAAGAAATGGGTAGCAAATAGAAACTCAAATTTCTGTAAATTGATTTACAATTGTTTCATCTTTGTTTCTATATTACTGTTTTCATGTTTTGTAAAGAGACACTTAAATCTCTAGTTAAATTCTTAAAGCAAATACAAATTAATAGAACGCGGATATCACAAACACTTTTATTTCAGGTCTTTTTTTTTTTTCAAAGATCGTTGTTTGGTAGAGCTTTTAGAGTTTGAAAAAGCGTAGGAATGTTGTTTATAAATCAAACACTGTTTTAAACAACAAAATTCATTTTTTTCAAATATTTAATTAGTTTATTTTAGTGAATCTGAAAAATTAGAAATTCAAACTGAATAGATTCTCAACTTCCCTCGGTATCCGCTTTGGCGTTGCTTTTATAACTCTTTTCCGCTGTCCTTTATGTCCTGATTCTGATGCTTTATCCAAACGACTTTGTGTTGATTTTGGCTTCATAGAAATTGCTGCCTTTTTTTTTTTTTTTGTATTTCAACAATTGCGGGGTCGGATATCAAACCATAAATCTTTAAGATGGTAAATCGATGTCTTTGTTTAGTAAGCTATGCTTGGATCGACACCTAGATTCATTCTAAAATAGAACTTTGGATTTTTTTGTTTCTTACCAAGAGAAAATTTGATCATCCATTGAGGTCTAGTAGAATTCTTTTAATTTATTCACCGATCAAACCTTATACACAAGTGTTTGATTATAATACAAGAATTGTTGTAATGCTGAGCTATTGGGTTATTGTGTTGAGGATATCTATACAAGATGAAATATAAGTATCACTAACTTCCAAACTTGAACATATTGATGTCGAGGTGATTTAATATAGTATCTGAGTTAATCATCATAGGAATCATAGGTTGAACTAATGGTAAATTTCTAGTGACTACCTAACTAGGGTTTAATATCCTAGAGTTTTCTTGATATCCAAATATTATAGGAAAAGGTAGGTTGTCTAATGAGATTAGTCGAGATGTGTATAAGCTGATCCAGAAACTCACAAATATACAGATATGTAGCATATGAGTAAGCATTCTATCACGTTATGCTTTAGGTTTTGGAACTGGCTGGGAATGCAGCAAGAGACAACAAGAAGAACAGGATCATCCCGAGGCACGTGCTCTTGGCTGTGAGGAACGACGAGGAACTCGGGAAGCTTCTTGCCGGGGTGACAATTGCTCATGGTGGGGTGCTTCCAAACATCAACCCGGTCCTTCTTCCAAAGAAATCAGAGAGGGTGGCGGCAGCAAAGGAGCCCAAGTCACCCTCCAAGGGTACCAAGTCCCCCAAGAAGGCCTAGCTTAGCTTCTCATATGCTCCACGACTACTCACTGTCTGTATTTAGATTGGAGCTATCTTCATGTTTAGGACCACTTTTTTATGTGTTTGTGTCTTTATATTGTAGGATACTTCTTTATGTTATCACAATTCTCAGTTGA

mRNA sequence

GCGATGTGTCCATGTCATCACGAACACGGCGTGTGTCATTCACTTTCCATTTTATTTTTCTCATTTCATAAGAAAAAATGTCATCTCCGTTGAAACCCCGTCGTCGTTAACCTCCCTCACCTTTTCATCTCTTTTTTCTGTTTGTTTCCCCGGAAAATTTTCTCTTCCAATGGATTCTGGCGGCAAGGCGAAGAAAGGCTTCGCCGGCAGACGAGGTGGTGCCGATTCTAAGAAGAAGCCTGTCTCTCGCTCTGTCAAAGCCGGCCTCCAGTTTCCCGTTGGCAGAATCGGCCGCTACTTGAAGAATGGCCGTTACTCTCAACGAGTCGGAACTGGCGCTCCGGTTTACCTTGCTGCTGTGCTTGAGTACCTCGCTGCTGAGGATCATCCCGAGGCACGTGCTCTTGGCTGTGAGGAACGACGAGGAACTCGGGAAGCTTCTTGCCGGGGTGACAATTGCTCATGGTGGGGTGCTTCCAAACATCAACCCGGTCCTTCTTCCAAAGAAATCAGAGAGGGTGGCGGCAGCAAAGGAGCCCAAGTCACCCTCCAAGGGATACTTCTTTATGTTATCACAATTCTCAGTTGA

Coding sequence (CDS)

ATGGATTCTGGCGGCAAGGCGAAGAAAGGCTTCGCCGGCAGACGAGGTGGTGCCGATTCTAAGAAGAAGCCTGTCTCTCGCTCTGTCAAAGCCGGCCTCCAGTTTCCCGTTGGCAGAATCGGCCGCTACTTGAAGAATGGCCGTTACTCTCAACGAGTCGGAACTGGCGCTCCGGTTTACCTTGCTGCTGTGCTTGAGTACCTCGCTGCTGAGGATCATCCCGAGGCACGTGCTCTTGGCTGTGAGGAACGACGAGGAACTCGGGAAGCTTCTTGCCGGGGTGACAATTGCTCATGGTGGGGTGCTTCCAAACATCAACCCGGTCCTTCTTCCAAAGAAATCAGAGAGGGTGGCGGCAGCAAAGGAGCCCAAGTCACCCTCCAAGGGATACTTCTTTATGTTATCACAATTCTCAGTTGA

Protein sequence

MDSGGKAKKGFAGRRGGADSKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVYLAAVLEYLAAEDHPEARALGCEERRGTREASCRGDNCSWWGASKHQPGPSSKEIREGGGSKGAQVTLQGILLYVITILS
Homology
[Close]
BLAST of CsGy4G013920 vs. NCBI nr
Match: XP_004142082.1 (PREDICTED: probable histone H2A.4 [Cucumis sativus] >KGN54228.1 hypothetical protein Csa_4G293870 [Cucumis sativus])

HSP 1 Score: 139.0 bits (349), Expect = 1.2e-29
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0 

Query: 1  MDSGGKAKKGFAGRRGGADSKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
          MDSGGKAKKGFAGRRGGADSKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY
Sbjct: 1  MDSGGKAKKGFAGRRGGADSKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60

Query: 61 LAAVLEYLAAE 72
          LAAVLEYLAAE
Sbjct: 61 LAAVLEYLAAE 71

[Close]
BLAST of CsGy4G013920 vs. NCBI nr
Match: XP_008447608.1 (PREDICTED: probable histone H2A.4 [Cucumis melo])

HSP 1 Score: 134.4 bits (337), Expect = 2.9e-28
Identity = 69/71 (97.18%), Postives = 69/71 (97.18%), Query Frame = 0 

Query: 1  MDSGGKAKKGFAGRRGGADSKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
          MDSGGKAKKGFAGRRGGA  KKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY
Sbjct: 1  MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60

Query: 61 LAAVLEYLAAE 72
          LAAVLEYLAAE
Sbjct: 61 LAAVLEYLAAE 71

[Close]
BLAST of CsGy4G013920 vs. NCBI nr
Match: XP_022143711.1 (histone H2A [Momordica charantia])

HSP 1 Score: 125.6 bits (314), Expect = 1.4e-25
Identity = 67/71 (94.37%), Postives = 67/71 (94.37%), Query Frame = 0 

Query: 1  MDSGGKAKKGFAGRRGGADSKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
          MDSGGKAKKG AGRRGG   KKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY
Sbjct: 1  MDSGGKAKKGAAGRRGGG-PKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60

Query: 61 LAAVLEYLAAE 72
          LAAVLEYLAAE
Sbjct: 61 LAAVLEYLAAE 70

[Close]
BLAST of CsGy4G013920 vs. NCBI nr
Match: PSS14262.1 (Histone H2A.5 like [Actinidia chinensis var. chinensis] >PSS14263.1 Histone H2A.5 like [Actinidia chinensis var. chinensis])

HSP 1 Score: 120.2 bits (300), Expect = 5.7e-24
Identity = 63/71 (88.73%), Postives = 66/71 (92.96%), Query Frame = 0 

Query: 1  MDSGGKAKKGFAGRRGGADSKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
          MD+GGKAKKG AGRRGG   KKKPVSRSVKAGLQFPVGRIGRYLK GRY+QRVGTGAPVY
Sbjct: 1  MDAGGKAKKGAAGRRGGG-PKKKPVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVY 60

Query: 61 LAAVLEYLAAE 72
          +AAVLEYLAAE
Sbjct: 61 MAAVLEYLAAE 70

[Close]
BLAST of CsGy4G013920 vs. NCBI nr
Match: XP_020101106.1 (probable histone H2A.2 [Ananas comosus] >OAY84747.1 putative histone H2A.6 [Ananas comosus])

HSP 1 Score: 119.0 bits (297), Expect = 1.3e-23
Identity = 63/71 (88.73%), Postives = 64/71 (90.14%), Query Frame = 0 

Query: 1  MDSGGKAKKGFAGRRGGADSKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
          MD GGK KKG AGR+GG   KKKPVSRSVKAGLQFPVGRIGRYLK GRYSQRVGTGAPVY
Sbjct: 1  MDGGGKVKKGAAGRKGGG-PKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVY 60

Query: 61 LAAVLEYLAAE 72
          LAAVLEYLAAE
Sbjct: 61 LAAVLEYLAAE 70

[Close]
BLAST of CsGy4G013920 vs. TAIR10
Match: AT5G02560.2 (histone H2A 12)

HSP 1 Score: 118.6 bits (296), Expect = 3.0e-27
Identity = 61/72 (84.72%), Postives = 64/72 (88.89%), Query Frame = 0 

Query: 1  MDSGGKAKKGFAGRRGGADSKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
          MDSG K KKG AGRR G   KKKPVSRSVK+GLQFPVGRIGRYLK GRYS+RVGTGAPVY
Sbjct: 1  MDSGTKVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVY 60

Query: 61 LAAVLEYLAAED 73
          LAAVLEYLAAE+
Sbjct: 61 LAAVLEYLAAEN 72

[Close]
BLAST of CsGy4G013920 vs. TAIR10
Match: AT5G59870.1 (histone H2A 6)

HSP 1 Score: 94.7 bits (234), Expect = 4.7e-20
Identity = 49/71 (69.01%), Postives = 57/71 (80.28%), Query Frame = 0 

Query: 1  MDSGGKAKKGFAGRRGGADSKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
          M+S GK KK F GR+     K K VS+S+KAGLQFPVGRI R+LK GRY+QR+G GAPVY
Sbjct: 1  MESTGKVKKAFGGRKPPGAPKTKSVSKSMKAGLQFPVGRITRFLKKGRYAQRLGGGAPVY 60

Query: 61 LAAVLEYLAAE 72
          +AAVLEYLAAE
Sbjct: 61 MAAVLEYLAAE 71

[Close]
BLAST of CsGy4G013920 vs. TAIR10
Match: AT5G27670.1 (histone H2A 7)

HSP 1 Score: 90.9 bits (224), Expect = 6.7e-19
Identity = 48/66 (72.73%), Postives = 54/66 (81.82%), Query Frame = 0 

Query: 6  KAKKGFAGRRGGADSKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVYLAAVL 65
          K  +G  GR+GG   +KK VS+SVKAGLQFPVGRI RYLK GRY+ R G+GAPVYLAAVL
Sbjct: 9  KPTRGAGGRKGG--DRKKSVSKSVKAGLQFPVGRIARYLKKGRYALRYGSGAPVYLAAVL 68

Query: 66 EYLAAE 72
          EYLAAE
Sbjct: 69 EYLAAE 72

[Close]
BLAST of CsGy4G013920 vs. TAIR10
Match: AT1G51060.1 (histone H2A 10)

HSP 1 Score: 84.7 bits (208), Expect = 4.8e-17
Identity = 42/59 (71.19%), Postives = 49/59 (83.05%), Query Frame = 0 

Query: 13 GRRGGADSKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVYLAAVLEYLAAE 72
          G+  G+ S KK  +RS KAGLQFPVGRI R+LK G+Y++RVG GAPVYLAAVLEYLAAE
Sbjct: 5  GKTLGSGSAKKATTRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYLAAE 63

[Close]
BLAST of CsGy4G013920 vs. TAIR10
Match: AT3G20670.1 (histone H2A 13)

HSP 1 Score: 84.7 bits (208), Expect = 4.8e-17
Identity = 43/59 (72.88%), Postives = 48/59 (81.36%), Query Frame = 0 

Query: 13 GRRGGADSKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVYLAAVLEYLAAE 72
          G+  G+   KK  SRS KAGLQFPVGRI R+LKNG+Y+ RVG GAPVYLAAVLEYLAAE
Sbjct: 5  GKTLGSGVAKKSTSRSSKAGLQFPVGRIARFLKNGKYATRVGAGAPVYLAAVLEYLAAE 63

[Close]
BLAST of CsGy4G013920 vs. Swiss-Prot
Match: sp|Q9LZ46|H2A4_ARATH (Probable histone H2A.4 OS=Arabidopsis thaliana OX=3702 GN=At5g02560 PE=1 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 9.3e-26
Identity = 61/71 (85.92%), Postives = 63/71 (88.73%), Query Frame = 0 

Query: 1  MDSGGKAKKGFAGRRGGADSKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
          MDSG K KKG AGRR G   KKKPVSRSVK+GLQFPVGRIGRYLK GRYS+RVGTGAPVY
Sbjct: 1  MDSGTKVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVY 60

Query: 61 LAAVLEYLAAE 72
          LAAVLEYLAAE
Sbjct: 61 LAAVLEYLAAE 71

[Close]
BLAST of CsGy4G013920 vs. Swiss-Prot
Match: sp|P19177|H2A_PETCR (Histone H2A OS=Petroselinum crispum OX=4043 PE=2 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 6.6e-24
Identity = 58/71 (81.69%), Postives = 64/71 (90.14%), Query Frame = 0 

Query: 1  MDSGGKAKKGFAGRRGGADSKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
          M++ GKAKKGF GR+GG   +KK V+RSVKAGLQFPVGRIGRYLK GRY+QRVGTGAPVY
Sbjct: 1  METAGKAKKGFGGRKGG--PRKKSVTRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVY 60

Query: 61 LAAVLEYLAAE 72
          LAAVLEYLAAE
Sbjct: 61 LAAVLEYLAAE 69

[Close]
BLAST of CsGy4G013920 vs. Swiss-Prot
Match: sp|Q9M531|H2A_EUPES (Histone H2A OS=Euphorbia esula OX=3993 PE=2 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 5.6e-23
Identity = 58/71 (81.69%), Postives = 62/71 (87.32%), Query Frame = 0 

Query: 1  MDSGGKAKKGFAGRRGGADSKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
          MD+G K KKG AG R G   KKKPVSRSVKAGLQFPVGRIGR+LK GRY+QRVG+GAPVY
Sbjct: 1  MDTGAKLKKG-AGERKGGGPKKKPVSRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPVY 60

Query: 61 LAAVLEYLAAE 72
          LAAVLEYLAAE
Sbjct: 61 LAAVLEYLAAE 70

[Close]
BLAST of CsGy4G013920 vs. Swiss-Prot
Match: sp|Q2HU65|H2A2_MEDTR (Probable histone H2A.2 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g4v1 PE=3 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.1e-21
Identity = 54/71 (76.06%), Postives = 61/71 (85.92%), Query Frame = 0 

Query: 1  MDSGGKAKKGFAGRRGGADSKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
          MD+  K KKG  GR+GG   +KK V+RS++AGLQFPVGRIGRYLK GRY+QRVGTGAPVY
Sbjct: 1  MDASTKTKKGAGGRKGGG-PRKKSVTRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVY 60

Query: 61 LAAVLEYLAAE 72
          LAAVLEYLAAE
Sbjct: 61 LAAVLEYLAAE 70

[Close]
BLAST of CsGy4G013920 vs. Swiss-Prot
Match: sp|A2XZN0|H2A6_ORYSI (Probable histone H2A.6 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_017523 PE=3 SV=2)

HSP 1 Score: 104.4 bits (259), Expect = 1.1e-21
Identity = 57/68 (83.82%), Postives = 59/68 (86.76%), Query Frame = 0 

Query: 4  GGKAKKGFAGRRGGADSKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVYLAA 63
          GGKA K   GR+ G   KKKPVSRSVKAGLQFPVGRIGRYLK GRY+QRVGTGAPVYLAA
Sbjct: 6  GGKAAKKAVGRKLGG-PKKKPVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAA 65

Query: 64 VLEYLAAE 72
          VLEYLAAE
Sbjct: 66 VLEYLAAE 72

[Close]
BLAST of CsGy4G013920 vs. TrEMBL
Match: tr|A0A0A0KXF2|A0A0A0KXF2_CUCSA (Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_4G293870 PE=3 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 7.8e-30
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0 

Query: 1  MDSGGKAKKGFAGRRGGADSKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
          MDSGGKAKKGFAGRRGGADSKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY
Sbjct: 1  MDSGGKAKKGFAGRRGGADSKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60

Query: 61 LAAVLEYLAAE 72
          LAAVLEYLAAE
Sbjct: 61 LAAVLEYLAAE 71

[Close]
BLAST of CsGy4G013920 vs. TrEMBL
Match: tr|A0A1S3BHV2|A0A1S3BHV2_CUCME (Histone H2A OS=Cucumis melo OX=3656 GN=LOC103490019 PE=3 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.9e-28
Identity = 69/71 (97.18%), Postives = 69/71 (97.18%), Query Frame = 0 

Query: 1  MDSGGKAKKGFAGRRGGADSKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
          MDSGGKAKKGFAGRRGGA  KKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY
Sbjct: 1  MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60

Query: 61 LAAVLEYLAAE 72
          LAAVLEYLAAE
Sbjct: 61 LAAVLEYLAAE 71

[Close]
BLAST of CsGy4G013920 vs. TrEMBL
Match: tr|A0A2R6QT23|A0A2R6QT23_ACTCH (Histone H2A OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc14859 PE=3 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 3.8e-24
Identity = 63/71 (88.73%), Postives = 66/71 (92.96%), Query Frame = 0 

Query: 1  MDSGGKAKKGFAGRRGGADSKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
          MD+GGKAKKG AGRRGG   KKKPVSRSVKAGLQFPVGRIGRYLK GRY+QRVGTGAPVY
Sbjct: 1  MDAGGKAKKGAAGRRGGG-PKKKPVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVY 60

Query: 61 LAAVLEYLAAE 72
          +AAVLEYLAAE
Sbjct: 61 MAAVLEYLAAE 70

[Close]
BLAST of CsGy4G013920 vs. TrEMBL
Match: tr|W9SJX9|W9SJX9_9ROSA (Histone H2A OS=Morus notabilis OX=981085 GN=L484_010832 PE=3 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 8.4e-24
Identity = 62/71 (87.32%), Postives = 65/71 (91.55%), Query Frame = 0 

Query: 1  MDSGGKAKKGFAGRRGGADSKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
          MD+GGK KKG AGR+GG   KKKPVSRSVKAGLQFPVGRIGRYLK GRYSQR+GTGAPVY
Sbjct: 1  MDTGGKVKKGAAGRKGGG-PKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRIGTGAPVY 60

Query: 61 LAAVLEYLAAE 72
          LAAVLEYLAAE
Sbjct: 61 LAAVLEYLAAE 70

[Close]
BLAST of CsGy4G013920 vs. TrEMBL
Match: tr|A0A199W5J0|A0A199W5J0_ANACO (Histone H2A OS=Ananas comosus OX=4615 GN=ACMD2_06881 PE=3 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 8.4e-24
Identity = 63/71 (88.73%), Postives = 64/71 (90.14%), Query Frame = 0 

Query: 1  MDSGGKAKKGFAGRRGGADSKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
          MD GGK KKG AGR+GG   KKKPVSRSVKAGLQFPVGRIGRYLK GRYSQRVGTGAPVY
Sbjct: 1  MDGGGKVKKGAAGRKGGG-PKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVY 60

Query: 61 LAAVLEYLAAE 72
          LAAVLEYLAAE
Sbjct: 61 LAAVLEYLAAE 70

The following BLAST results are available for this feature:
BLAST of CsGy4G013920 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004142082.11.2e-29100.00PREDICTED: probable histone H2A.4 [Cucumis sativus] >KGN54228.1 hypothetical pro... [more]
XP_008447608.12.9e-2897.18PREDICTED: probable histone H2A.4 [Cucumis melo][more]
XP_022143711.11.4e-2594.37histone H2A [Momordica charantia][more]
PSS14262.15.7e-2488.73Histone H2A.5 like [Actinidia chinensis var. chinensis] >PSS14263.1 Histone H2A.... [more]
XP_020101106.11.3e-2388.73probable histone H2A.2 [Ananas comosus] >OAY84747.1 putative histone H2A.6 [Anan... [more]
BLAST of CsGy4G013920 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G02560.23.0e-2784.72histone H2A 12[more]
AT5G59870.14.7e-2069.01histone H2A 6[more]
AT5G27670.16.7e-1972.73histone H2A 7[more]
AT1G51060.14.8e-1771.19histone H2A 10[more]
AT3G20670.14.8e-1772.88histone H2A 13[more]
BLAST of CsGy4G013920 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9LZ46|H2A4_ARATH9.3e-2685.92Probable histone H2A.4 OS=Arabidopsis thaliana OX=3702 GN=At5g02560 PE=1 SV=1[more]
sp|P19177|H2A_PETCR6.6e-2481.69Histone H2A OS=Petroselinum crispum OX=4043 PE=2 SV=1[more]
sp|Q9M531|H2A_EUPES5.6e-2381.69Histone H2A OS=Euphorbia esula OX=3993 PE=2 SV=1[more]
sp|Q2HU65|H2A2_MEDTR1.1e-2176.06Probable histone H2A.2 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g4v1 P... [more]
sp|A2XZN0|H2A6_ORYSI1.1e-2183.82Probable histone H2A.6 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_017523 PE=3... [more]
BLAST of CsGy4G013920 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KXF2|A0A0A0KXF2_CUCSA7.8e-30100.00Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_4G293870 PE=3 SV=1[more]
tr|A0A1S3BHV2|A0A1S3BHV2_CUCME1.9e-2897.18Histone H2A OS=Cucumis melo OX=3656 GN=LOC103490019 PE=3 SV=1[more]
tr|A0A2R6QT23|A0A2R6QT23_ACTCH3.8e-2488.73Histone H2A OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc14859 P... [more]
tr|W9SJX9|W9SJX9_9ROSA8.4e-2487.32Histone H2A OS=Morus notabilis OX=981085 GN=L484_010832 PE=3 SV=1[more]
tr|A0A199W5J0|A0A199W5J0_ANACO8.4e-2488.73Histone H2A OS=Ananas comosus OX=4615 GN=ACMD2_06881 PE=3 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0000786nucleosome
Vocabulary: INTERPRO
TermDefinition
IPR032458Histone_H2A_CS
IPR009072Histone-fold
IPR002119Histone_H2A
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006342 chromatin silencing
biological_process GO:0008150 biological_process
cellular_component GO:0000775 chromosome, centromeric region
cellular_component GO:0000792 heterochromatin
cellular_component GO:0000790 nuclear chromatin
cellular_component GO:0000786 nucleosome
cellular_component GO:0005634 nucleus
molecular_function GO:0003682 chromatin binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0046982 protein heterodimerization activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy4G013920.1CsGy4G013920.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002119Histone H2APRINTSPR00620HISTONEH2Acoord: 23..45
score: 69.23
coord: 52..67
score: 86.43
IPR002119Histone H2ASMARTSM00414h2a4coord: 12..121
e-value: 1.0E-18
score: 78.2
IPR009072Histone-foldGENE3DG3DSA:1.10.20.10coord: 12..93
e-value: 1.7E-23
score: 84.8
IPR009072Histone-foldSUPERFAMILYSSF47113Histone-foldcoord: 4..71
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 101..120
NoneNo IPR availablePANTHERPTHR23430:SF80SUBFAMILY NOT NAMEDcoord: 4..71
NoneNo IPR availablePANTHERPTHR23430HISTONE H2Acoord: 4..71
IPR032458Histone H2A conserved sitePROSITEPS00046HISTONE_H2Acoord: 31..37

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy4G013920Csa4G293870Cucumber (Chinese Long) v2cgybcuB167
CsGy4G013920CSPI04G14410Wild cucumber (PI 183967)cgybcpiB170
CsGy4G013920MELO3C013682.2Melon (DHL92) v3.6.1cgybmedB234
CsGy4G013920MELO3C003108.2Melon (DHL92) v3.6.1cgybmedB279
CsGy4G013920CsaV3_4G024740Cucumber (Chinese Long) v3cgybcucB171
CsGy4G013920Cla97C02G046350Watermelon (97103) v2cgybwmbB274
CsGy4G013920Cla97C04G075120Watermelon (97103) v2cgybwmbB282
CsGy4G013920Bhi10G000543Wax gourdcgybwgoB372
CsGy4G013920Bhi03G001239Wax gourdcgybwgoB388
CsGy4G013920Carg20278Silver-seed gourdcarcgybB0317
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CsGy4G013920CsGy6G016360Cucumber (Gy14) v2cgybcgybB131
The following block(s) are covering this gene:
GeneOrganismBlock
CsGy4G013920Cucumber (Gy14) v2cgybcgybB123
CsGy4G013920Cucumber (Gy14) v2cgybcgybB083
CsGy4G013920Cucumber (Gy14) v2cgybcgybB124
CsGy4G013920Cucurbita maxima (Rimu)cgybcmaB492
CsGy4G013920Cucurbita maxima (Rimu)cgybcmaB484
CsGy4G013920Cucurbita maxima (Rimu)cgybcmaB488
CsGy4G013920Cucurbita maxima (Rimu)cgybcmaB524
CsGy4G013920Cucurbita maxima (Rimu)cgybcmaB513
CsGy4G013920Cucurbita maxima (Rimu)cgybcmaB528
CsGy4G013920Cucurbita maxima (Rimu)cgybcmaB533
CsGy4G013920Cucurbita maxima (Rimu)cgybcmaB546
CsGy4G013920Cucurbita maxima (Rimu)cgybcmaB548
CsGy4G013920Cucurbita maxima (Rimu)cgybcmaB561
CsGy4G013920Cucurbita maxima (Rimu)cgybcmaB562
CsGy4G013920Cucurbita moschata (Rifu)cgybcmoB454
CsGy4G013920Cucurbita moschata (Rifu)cgybcmoB458
CsGy4G013920Cucurbita moschata (Rifu)cgybcmoB462
CsGy4G013920Cucurbita moschata (Rifu)cgybcmoB483
CsGy4G013920Cucurbita moschata (Rifu)cgybcmoB495
CsGy4G013920Cucurbita moschata (Rifu)cgybcmoB500
CsGy4G013920Cucurbita moschata (Rifu)cgybcmoB507
CsGy4G013920Cucurbita moschata (Rifu)cgybcmoB520
CsGy4G013920Cucurbita moschata (Rifu)cgybcmoB522
CsGy4G013920Cucurbita moschata (Rifu)cgybcmoB536
CsGy4G013920Cucurbita moschata (Rifu)cgybcmoB537
CsGy4G013920Cucurbita pepo (Zucchini)cgybcpeB463
CsGy4G013920Cucurbita pepo (Zucchini)cgybcpeB481
CsGy4G013920Cucurbita pepo (Zucchini)cgybcpeB494
CsGy4G013920Cucurbita pepo (Zucchini)cgybcpeB510
CsGy4G013920Cucurbita pepo (Zucchini)cgybcpeB532
CsGy4G013920Cucurbita pepo (Zucchini)cgybcpeB536
CsGy4G013920Cucurbita pepo (Zucchini)cgybcpeB555
CsGy4G013920Cucurbita pepo (Zucchini)cgybcpeB560
CsGy4G013920Cucurbita pepo (Zucchini)cgybcpeB577
CsGy4G013920Cucumber (Chinese Long) v2cgybcuB156
CsGy4G013920Cucumber (Chinese Long) v2cgybcuB162
CsGy4G013920Cucumber (Chinese Long) v2cgybcuB178
CsGy4G013920Cucumber (Chinese Long) v2cgybcuB179
CsGy4G013920Bottle gourd (USVL1VR-Ls)cgyblsiB233
CsGy4G013920Bottle gourd (USVL1VR-Ls)cgyblsiB236
CsGy4G013920Bottle gourd (USVL1VR-Ls)cgyblsiB253
CsGy4G013920Bottle gourd (USVL1VR-Ls)cgyblsiB256
CsGy4G013920Bottle gourd (USVL1VR-Ls)cgyblsiB258
CsGy4G013920Melon (DHL92) v3.5.1cgybmeB231
CsGy4G013920Melon (DHL92) v3.5.1cgybmeB233
CsGy4G013920Melon (DHL92) v3.5.1cgybmeB248
CsGy4G013920Melon (DHL92) v3.5.1cgybmeB279
CsGy4G013920Melon (DHL92) v3.6.1cgybmedB232
CsGy4G013920Melon (DHL92) v3.6.1cgybmedB233
CsGy4G013920Melon (DHL92) v3.6.1cgybmedB246
CsGy4G013920Watermelon (Charleston Gray)cgybwcgB250
CsGy4G013920Watermelon (Charleston Gray)cgybwcgB252
CsGy4G013920Watermelon (Charleston Gray)cgybwcgB273
CsGy4G013920Watermelon (Charleston Gray)cgybwcgB282
CsGy4G013920Watermelon (97103) v1cgybwmB314
CsGy4G013920Watermelon (97103) v1cgybwmB268
CsGy4G013920Watermelon (97103) v1cgybwmB270
CsGy4G013920Watermelon (97103) v1cgybwmB281
CsGy4G013920Watermelon (97103) v1cgybwmB324
CsGy4G013920Wild cucumber (PI 183967)cgybcpiB159
CsGy4G013920Wild cucumber (PI 183967)cgybcpiB165
CsGy4G013920Wild cucumber (PI 183967)cgybcpiB180
CsGy4G013920Silver-seed gourdcarcgybB0173
CsGy4G013920Silver-seed gourdcarcgybB0345
CsGy4G013920Silver-seed gourdcarcgybB0480
CsGy4G013920Silver-seed gourdcarcgybB0921
CsGy4G013920Silver-seed gourdcarcgybB0985
CsGy4G013920Cucumber (Chinese Long) v3cgybcucB163
CsGy4G013920Cucumber (Chinese Long) v3cgybcucB169
CsGy4G013920Cucumber (Chinese Long) v3cgybcucB182
CsGy4G013920Cucumber (Chinese Long) v3cgybcucB183
CsGy4G013920Watermelon (97103) v2cgybwmbB260
CsGy4G013920Watermelon (97103) v2cgybwmbB276
CsGy4G013920Watermelon (97103) v2cgybwmbB301
CsGy4G013920Watermelon (97103) v2cgybwmbB317
CsGy4G013920Wax gourdcgybwgoB343