CsGy4G011180 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy4G011180
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr4 : 10487634 .. 10488520 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACGAGTTGTCAAAAGGATCATCAATAAATCCTAAAAAAAACAAAGTAACTTCTTCCATTGAAGAAGAGTTTTAGGAAAGCTTCACAGATATCCAAAAGAGATACCAACCAATTTCCATGGAAGAACAGCAATCAGGAGCTCCAAAAGATTGTCATAGCAATCTATATGACTATCAAGAGTTTAAGGCTATGATTGGTCATCTCAACAAAGCCACTCATTTCAGCCCCAGTGTTTTATCTAACCATCTTATCAATTCGCCGTTTTATCGTCAACGTCTGAATGAAATTTACAAAAATAGTATTGGATCAACTAAGAAGATCATGTGGTATGAAACAGGTGACTATTTCTTGAAGTTTAAACTTCGTATAAACATTTGAGGTCAAAATTAAATTTATTTCAACAATATATAATTTGCACGATCGATTCCTTCCTAAAAGTTGAAGGTTTGTTCCCGCTCTATCAAACTTGAAGTAAAAAAGTACATAAATATTAGATGAAATGCATATATTTTAACTAATCAACCGCTATATTTAGGTCGGCAAAAAGAAAACATTGAGACCTCAAAACGAAGAACAAAACAAAGGGGGATGATATCAAATGCATCACTTGCTGGGAGGCTATGGAAGCAAATCAAAGTAGGGCTAATGGGCATTCTTCCAAAGAAAGACCTGAAGTAATTATAGTTTTACATATATATTTTCATGTGATGTATATTCAATGAATACTGTTGCGTAGTTTATATTTTCCATACTTCTATGTAATCAGTAAAGCAATTTTCAAGTTAGTATCTTTCACAAATATTTATATCGTTTGTACGTTCGAAAAACTATCTTGTAGATATTGATTATGAACAAGACAGGAACCACATAAATGCGTAACTTCATG

mRNA sequence

AAACGAGTTGTCAAAAGGATCATCAATAAATCCTAAAAAAAACAAAGTAACTTCTTCCATTGAAGAAGAGTTTTAGGAAAGCTTCACAGATATCCAAAAGAGATACCAACCAATTTCCATGGAAGAACAGCAATCAGGAGCTCCAAAAGATTGTCATAGCAATCTATATGACTATCAAGAGTTTAAGGCTATGATTGGTCATCTCAACAAAGCCACTCATTTCAGCCCCAGTGTTTTATCTAACCATCTTATCAATTCGCCGTTTTATCGTCAACGTCTGAATGAAATTTACAAAAATAGTATTGGATCAACTAAGAAGATCATGTGGTATGAAACAGGTCGGCAAAAAGAAAACATTGAGACCTCAAAACGAAGAACAAAACAAAGGGGGATGATATCAAATGCATCACTTGCTGGGAGGCTATGGAAGCAAATCAAAGTAGGGCTAATGGGCATTCTTCCAAAGAAAGACCTGAAGTAATTATAGTTTTACATATATATTTTCATGTGATGTATATTCAATGAATACTGTTGCGTAGTTTATATTTTCCATACTTCTATGTAATCAGTAAAGCAATTTTCAAGTTAGTATCTTTCACAAATATTTATATCGTTTGTACGTTCGAAAAACTATCTTGTAGATATTGATTATGAACAAGACAGGAACCACATAAATGCGTAACTTCATG

Coding sequence (CDS)

ATGGAAGAACAGCAATCAGGAGCTCCAAAAGATTGTCATAGCAATCTATATGACTATCAAGAGTTTAAGGCTATGATTGGTCATCTCAACAAAGCCACTCATTTCAGCCCCAGTGTTTTATCTAACCATCTTATCAATTCGCCGTTTTATCGTCAACGTCTGAATGAAATTTACAAAAATAGTATTGGATCAACTAAGAAGATCATGTGGTATGAAACAGGTCGGCAAAAAGAAAACATTGAGACCTCAAAACGAAGAACAAAACAAAGGGGGATGATATCAAATGCATCACTTGCTGGGAGGCTATGGAAGCAAATCAAAGTAGGGCTAATGGGCATTCTTCCAAAGAAAGACCTGAAGTAA

Protein sequence

MEEQQSGAPKDCHSNLYDYQEFKAMIGHLNKATHFSPSVLSNHLINSPFYRQRLNEIYKNSIGSTKKIMWYETGRQKENIETSKRRTKQRGMISNASLAGRLWKQIKVGLMGILPKKDLK

Homology

[Close]

BLAST of CsGy4G011180 vs. NCBI nr
Match: KGN53885.1 (hypothetical protein Csa_4G179690 [Cucumis sativus])

HSP 1 Score: 241.5 bits (615), Expect = 1.5e-60
Identity = 119/120 (99.17%), Postives = 119/120 (99.17%), Query Frame = 0


Query: 1   MEEQQSGAPKDCHSNLYDYQEFKAMIGHLNKATHFSPSVLSNHLINSPFYRQRLNEIYKN 60
           MEEQQSGAPKDCHSNLYDYQEFKAMIGHLNKATHFSPSVLSNHLINSPFYRQRLNEIYKN
Sbjct: 1   MEEQQSGAPKDCHSNLYDYQEFKAMIGHLNKATHFSPSVLSNHLINSPFYRQRLNEIYKN 60

Query: 61  SIGSTKKIMWYETGRQKENIETSKRRTKQRGMISNASLAGRLWKQIKVGLMGILPKKDLK 120
           SIGSTKKIMWYETGRQK NIETSKRRTKQRGMISNASLAGRLWKQIKVGLMGILPKKDLK
Sbjct: 61  SIGSTKKIMWYETGRQKGNIETSKRRTKQRGMISNASLAGRLWKQIKVGLMGILPKKDLK 120

[Close]

BLAST of CsGy4G011180 vs. NCBI nr
Match: KDP31321.1 (hypothetical protein JCGZ_11697 [Jatropha curcas])

HSP 1 Score: 59.7 bits (143), Expect = 7.9e-06
Identity = 42/115 (36.52%), Postives = 63/115 (54.78%), Query Frame = 0


Query: 8   APKDCHSNLYDYQEFKAMIGHLNKATH----FSPSVLSNHLINSPFYRQRLNEIYKNSIG 67
           +P+   S LYD  E +A+   LNKA       SP+++S   + SPFY QRL+ IYK +  
Sbjct: 38  SPRHNGSTLYDSFELRAVTNQLNKAIQSLNCSSPTLMS--YLKSPFYGQRLDSIYKENAK 97

Query: 68  STKKIMWYETGRQKENIETSKRRTKQRGMISNASLAGRLWKQIKVGLMGILPKKD 119
           + KKIM  +  R+  +I+    RT   G++S      RLWK++K GL+    + D
Sbjct: 98  TPKKIMGSQLARR--SIDKRASRTAGGGLMS------RLWKKVKQGLLWSKQRND 142

[Close]

BLAST of CsGy4G011180 vs. NCBI nr
Match: EEF47791.1 (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 57.8 bits (138), Expect = 3.0e-05
Identity = 37/107 (34.58%), Postives = 58/107 (54.21%), Query Frame = 0


Query: 9   PKDCHSNLYDYQEFKAMIGHLNKA----THFSPSVLSNHLINSPFYRQRLNEIYKNSIGS 68
           P+   S LYD  EF+A+   LNKA       SP+ +S   + SPFY  RL+ IYK +  +
Sbjct: 39  PRHNGSTLYDSYEFRAVTEQLNKAMQSLNSSSPTFMS--YLKSPFYSHRLDSIYKENSET 98

Query: 69  TKKIMWYETGRQKENIETSKRRTKQRGMISNASLAGRLWKQIKVGLM 112
            K+IM     ++     + K+ +++   + +   A RLWK+IK GL+
Sbjct: 99  QKRIMCSRINQR----YSDKKASRKGSRVMSGGFASRLWKKIKEGLL 139

[Close]

BLAST of CsGy4G011180 vs. NCBI nr
Match: POE90868.1 (hypothetical protein CFP56_26514 [Quercus suber])

HSP 1 Score: 54.7 bits (130), Expect = 2.5e-04
Identity = 42/115 (36.52%), Postives = 53/115 (46.09%), Query Frame = 0


Query: 8   APKDCHSNLYDYQEFKAMIGHLNKATH----FSPSVLSNHLINSPFYRQRLNEIYKNSIG 67
           +PK   S LYD  E +A+   LNKA       SP  L  HL NSPFYRQ+L  IYK +  
Sbjct: 28  SPKHDGSTLYDSFELRAITHQLNKAIQASNVSSPPYLC-HLKNSPFYRQQLGRIYKEN-- 87

Query: 68  STKKIMWYETGRQKENIETSKRRTKQRGMISNASLAGRLWKQIKVGLMGILPKKD 119
              K  W  +          KR +       +     RLWK++K GL+    KKD
Sbjct: 88  --AKTSWRASSSLPACAVLDKRMSMADTNEGSGGFVTRLWKKVKQGLLRNEQKKD 137

[Close]

BLAST of CsGy4G011180 vs. TrEMBL
Match: tr|A0A0A0KW83|A0A0A0KW83_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G179690 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 9.7e-61
Identity = 119/120 (99.17%), Postives = 119/120 (99.17%), Query Frame = 0


Query: 1   MEEQQSGAPKDCHSNLYDYQEFKAMIGHLNKATHFSPSVLSNHLINSPFYRQRLNEIYKN 60
           MEEQQSGAPKDCHSNLYDYQEFKAMIGHLNKATHFSPSVLSNHLINSPFYRQRLNEIYKN
Sbjct: 1   MEEQQSGAPKDCHSNLYDYQEFKAMIGHLNKATHFSPSVLSNHLINSPFYRQRLNEIYKN 60

Query: 61  SIGSTKKIMWYETGRQKENIETSKRRTKQRGMISNASLAGRLWKQIKVGLMGILPKKDLK 120
           SIGSTKKIMWYETGRQK NIETSKRRTKQRGMISNASLAGRLWKQIKVGLMGILPKKDLK
Sbjct: 61  SIGSTKKIMWYETGRQKGNIETSKRRTKQRGMISNASLAGRLWKQIKVGLMGILPKKDLK 120

[Close]

BLAST of CsGy4G011180 vs. TrEMBL
Match: tr|A0A067K525|A0A067K525_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_11697 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.2e-06
Identity = 42/115 (36.52%), Postives = 63/115 (54.78%), Query Frame = 0


Query: 8   APKDCHSNLYDYQEFKAMIGHLNKATH----FSPSVLSNHLINSPFYRQRLNEIYKNSIG 67
           +P+   S LYD  E +A+   LNKA       SP+++S   + SPFY QRL+ IYK +  
Sbjct: 38  SPRHNGSTLYDSFELRAVTNQLNKAIQSLNCSSPTLMS--YLKSPFYGQRLDSIYKENAK 97

Query: 68  STKKIMWYETGRQKENIETSKRRTKQRGMISNASLAGRLWKQIKVGLMGILPKKD 119
           + KKIM  +  R+  +I+    RT   G++S      RLWK++K GL+    + D
Sbjct: 98  TPKKIMGSQLARR--SIDKRASRTAGGGLMS------RLWKKVKQGLLWSKQRND 142

[Close]

BLAST of CsGy4G011180 vs. TrEMBL
Match: tr|B9RLR6|B9RLR6_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1470430 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.0e-05
Identity = 37/107 (34.58%), Postives = 58/107 (54.21%), Query Frame = 0


Query: 9   PKDCHSNLYDYQEFKAMIGHLNKA----THFSPSVLSNHLINSPFYRQRLNEIYKNSIGS 68
           P+   S LYD  EF+A+   LNKA       SP+ +S   + SPFY  RL+ IYK +  +
Sbjct: 39  PRHNGSTLYDSYEFRAVTEQLNKAMQSLNSSSPTFMS--YLKSPFYSHRLDSIYKENSET 98

Query: 69  TKKIMWYETGRQKENIETSKRRTKQRGMISNASLAGRLWKQIKVGLM 112
            K+IM     ++     + K+ +++   + +   A RLWK+IK GL+
Sbjct: 99  QKRIMCSRINQR----YSDKKASRKGSRVMSGGFASRLWKKIKEGLL 139

[Close]

BLAST of CsGy4G011180 vs. TrEMBL
Match: tr|A0A2P4KCX5|A0A2P4KCX5_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_26514 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.7e-04
Identity = 42/115 (36.52%), Postives = 53/115 (46.09%), Query Frame = 0


Query: 8   APKDCHSNLYDYQEFKAMIGHLNKATH----FSPSVLSNHLINSPFYRQRLNEIYKNSIG 67
           +PK   S LYD  E +A+   LNKA       SP  L  HL NSPFYRQ+L  IYK +  
Sbjct: 28  SPKHDGSTLYDSFELRAITHQLNKAIQASNVSSPPYLC-HLKNSPFYRQQLGRIYKEN-- 87

Query: 68  STKKIMWYETGRQKENIETSKRRTKQRGMISNASLAGRLWKQIKVGLMGILPKKD 119
              K  W  +          KR +       +     RLWK++K GL+    KKD
Sbjct: 88  --AKTSWRASSSLPACAVLDKRMSMADTNEGSGGFVTRLWKKVKQGLLRNEQKKD 137

The following BLAST results are available for this feature:

BLAST of CsGy4G011180 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53885.1	1.5e-60	99.17	hypothetical protein Csa_4G179690 [Cucumis sativus]	[more]
KDP31321.1	7.9e-06	36.52	hypothetical protein JCGZ_11697 [Jatropha curcas]	[more]
EEF47791.1	3.0e-05	34.58	conserved hypothetical protein [Ricinus communis]	[more]
POE90868.1	2.5e-04	36.52	hypothetical protein CFP56_26514 [Quercus suber]	[more]

BLAST of CsGy4G011180 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy4G011180 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy4G011180 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KW83\|A0A0A0KW83_CUCSA	9.7e-61	99.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G179690 PE=4 SV=1	[more]
tr\|A0A067K525\|A0A067K525_JATCU	5.2e-06	36.52	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_11697 PE=4 SV=1	[more]
tr\|B9RLR6\|B9RLR6_RICCO	2.0e-05	34.58	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1470430 PE=4 SV=1	[more]
tr\|A0A2P4KCX5\|A0A2P4KCX5_QUESU	1.7e-04	36.52	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_26514 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G011180.1	CsGy4G011180.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy4G011180	Csa4G179690	Cucumber (Chinese Long) v2	cgybcuB169
CsGy4G011180	CSPI04G11730	Wild cucumber (PI 183967)	cgybcpiB168
CsGy4G011180	CsaV3_4G014680	Cucumber (Chinese Long) v3	cgybcucB171

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy4G011180	Cucurbita maxima (Rimu)	cgybcmaB563
CsGy4G011180	Cucurbita maxima (Rimu)	cgybcmaB499
CsGy4G011180	Cucurbita maxima (Rimu)	cgybcmaB552
CsGy4G011180	Cucurbita moschata (Rifu)	cgybcmoB469
CsGy4G011180	Cucurbita moschata (Rifu)	cgybcmoB538
CsGy4G011180	Cucurbita moschata (Rifu)	cgybcmoB526
CsGy4G011180	Cucurbita pepo (Zucchini)	cgybcpeB489
CsGy4G011180	Cucurbita pepo (Zucchini)	cgybcpeB513
CsGy4G011180	Cucurbita pepo (Zucchini)	cgybcpeB533
CsGy4G011180	Cucumber (Chinese Long) v2	cgybcuB168
CsGy4G011180	Bottle gourd (USVL1VR-Ls)	cgyblsiB260
CsGy4G011180	Melon (DHL92) v3.5.1	cgybmeB257
CsGy4G011180	Melon (DHL92) v3.6.1	cgybmedB256
CsGy4G011180	Watermelon (Charleston Gray)	cgybwcgB254
CsGy4G011180	Watermelon (Charleston Gray)	cgybwcgB256
CsGy4G011180	Watermelon (97103) v1	cgybwmB273
CsGy4G011180	Watermelon (97103) v1	cgybwmB275
CsGy4G011180	Silver-seed gourd	carcgybB0296
CsGy4G011180	Silver-seed gourd	carcgybB0308
CsGy4G011180	Silver-seed gourd	carcgybB0385
CsGy4G011180	Watermelon (97103) v2	cgybwmbB262
CsGy4G011180	Watermelon (97103) v2	cgybwmbB264
CsGy4G011180	Wax gourd	cgybwgoB345