CSPI04G11730 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G11730
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr4 : 10010527 .. 10011087 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAACAGCAATCAGGAGCTCCAAAAGATTGTCATAGCAATCTATATGACTATCAAGAGTTTAAGGCTATGATTGGTCATCTCAACAAAGCCACTCATTTCAGCCCCAGTGTTTTATCTAACCATCTTATCAATTCGCCGTTTTATCGTCAACGTCTGAATGAAATTTACAAAAATAGTATTGGATCAACTAAGAAGATCATGTGGTATGAAACAGGTGACTATTTCTTGAAGTTTAAACTTCGTATAAACATTTGAGGTCAAAATTAAATTTATTTCAACAATATATAATTTGCACGATCGATTCCTTCCTAAAAGTTGAAGGTTTGTTCCCGCTCTATCAAACTTGAAGTAAAAAAGTACATAAATATTAGATGAAATGCATATATTTTAACTAATCAACCGCTATATTTAGGTCGGCAAAAAGGAAACATTGAGACCTCAAAACGAAGAACAAAACAAAGGGGGATGATATCAAATGCATCACTTGCTGGGAGGCTATGGAAGCAAATCAAAGTAGGGCTAATGGGCATTCTTCCAAAGAAAGACCTGAAGTAA

mRNA sequence

ATGGAAGAACAGCAATCAGGAGCTCCAAAAGATTGTCATAGCAATCTATATGACTATCAAGAGTTTAAGGCTATGATTGGTCATCTCAACAAAGCCACTCATTTCAGCCCCAGTGTTTTATCTAACCATCTTATCAATTCGCCGTTTTATCGTCAACGTCTGAATGAAATTTACAAAAATAGTATTGGATCAACTAAGAAGATCATGTGGTATGAAACAGGTCGGCAAAAAGGAAACATTGAGACCTCAAAACGAAGAACAAAACAAAGGGGGATGATATCAAATGCATCACTTGCTGGGAGGCTATGGAAGCAAATCAAAGTAGGGCTAATGGGCATTCTTCCAAAGAAAGACCTGAAGTAA

Coding sequence (CDS)

ATGGAAGAACAGCAATCAGGAGCTCCAAAAGATTGTCATAGCAATCTATATGACTATCAAGAGTTTAAGGCTATGATTGGTCATCTCAACAAAGCCACTCATTTCAGCCCCAGTGTTTTATCTAACCATCTTATCAATTCGCCGTTTTATCGTCAACGTCTGAATGAAATTTACAAAAATAGTATTGGATCAACTAAGAAGATCATGTGGTATGAAACAGGTCGGCAAAAAGGAAACATTGAGACCTCAAAACGAAGAACAAAACAAAGGGGGATGATATCAAATGCATCACTTGCTGGGAGGCTATGGAAGCAAATCAAAGTAGGGCTAATGGGCATTCTTCCAAAGAAAGACCTGAAGTAA
Homology
[Close]
BLAST of CSPI04G11730 vs. TrEMBL
Match: A0A0A0KW83_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G179690 PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 2.8e-62
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1 

Query: 1   MEEQQSGAPKDCHSNLYDYQEFKAMIGHLNKATHFSPSVLSNHLINSPFYRQRLNEIYKN 60
           MEEQQSGAPKDCHSNLYDYQEFKAMIGHLNKATHFSPSVLSNHLINSPFYRQRLNEIYKN
Sbjct: 1   MEEQQSGAPKDCHSNLYDYQEFKAMIGHLNKATHFSPSVLSNHLINSPFYRQRLNEIYKN 60

Query: 61  SIGSTKKIMWYETGRQKGNIETSKRRTKQRGMISNASLAGRLWKQIKVGLMGILPKKDLK 120
           SIGSTKKIMWYETGRQKGNIETSKRRTKQRGMISNASLAGRLWKQIKVGLMGILPKKDLK
Sbjct: 61  SIGSTKKIMWYETGRQKGNIETSKRRTKQRGMISNASLAGRLWKQIKVGLMGILPKKDLK 120

[Close]
BLAST of CSPI04G11730 vs. TrEMBL
Match: A0A067K525_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11697 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.7e-06
Identity = 42/115 (36.52%), Postives = 63/115 (54.78%), Query Frame = 1 

Query: 8   APKDCHSNLYDYQEFKAMIGHLNKATHF----SPSVLSNHLINSPFYRQRLNEIYKNSIG 67
           +P+   S LYD  E +A+   LNKA       SP+++S   + SPFY QRL+ IYK +  
Sbjct: 38  SPRHNGSTLYDSFELRAVTNQLNKAIQSLNCSSPTLMS--YLKSPFYGQRLDSIYKENAK 97

Query: 68  STKKIMWYETGRQKGNIETSKRRTKQRGMISNASLAGRLWKQIKVGLMGILPKKD 119
           + KKIM  +  R+  +I+    RT   G++S      RLWK++K GL+    + D
Sbjct: 98  TPKKIMGSQLARR--SIDKRASRTAGGGLMS------RLWKKVKQGLLWSKQRND 142

[Close]
BLAST of CSPI04G11730 vs. TrEMBL
Match: B9RLR6_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1470430 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 6.4e-06
Identity = 37/107 (34.58%), Postives = 58/107 (54.21%), Query Frame = 1 

Query: 9   PKDCHSNLYDYQEFKAMIGHLNKATHF----SPSVLSNHLINSPFYRQRLNEIYKNSIGS 68
           P+   S LYD  EF+A+   LNKA       SP+ +S   + SPFY  RL+ IYK +  +
Sbjct: 39  PRHNGSTLYDSYEFRAVTEQLNKAMQSLNSSSPTFMS--YLKSPFYSHRLDSIYKENSET 98

Query: 69  TKKIMWYETGRQKGNIETSKRRTKQRGMISNASLAGRLWKQIKVGLM 112
            K+IM     ++     + K+ +++   + +   A RLWK+IK GL+
Sbjct: 99  QKRIMCSRINQR----YSDKKASRKGSRVMSGGFASRLWKKIKEGLL 139

[Close]
BLAST of CSPI04G11730 vs. NCBI nr
Match: gi|700198727|gb|KGN53885.1| (hypothetical protein Csa_4G179690 [Cucumis sativus])

HSP 1 Score: 245.7 bits (626), Expect = 4.0e-62
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1 

Query: 1   MEEQQSGAPKDCHSNLYDYQEFKAMIGHLNKATHFSPSVLSNHLINSPFYRQRLNEIYKN 60
           MEEQQSGAPKDCHSNLYDYQEFKAMIGHLNKATHFSPSVLSNHLINSPFYRQRLNEIYKN
Sbjct: 1   MEEQQSGAPKDCHSNLYDYQEFKAMIGHLNKATHFSPSVLSNHLINSPFYRQRLNEIYKN 60

Query: 61  SIGSTKKIMWYETGRQKGNIETSKRRTKQRGMISNASLAGRLWKQIKVGLMGILPKKDLK 120
           SIGSTKKIMWYETGRQKGNIETSKRRTKQRGMISNASLAGRLWKQIKVGLMGILPKKDLK
Sbjct: 61  SIGSTKKIMWYETGRQKGNIETSKRRTKQRGMISNASLAGRLWKQIKVGLMGILPKKDLK 120

[Close]
BLAST of CSPI04G11730 vs. NCBI nr
Match: gi|643721057|gb|KDP31321.1| (hypothetical protein JCGZ_11697 [Jatropha curcas])

HSP 1 Score: 60.5 bits (145), Expect = 2.4e-06
Identity = 42/115 (36.52%), Postives = 63/115 (54.78%), Query Frame = 1 

Query: 8   APKDCHSNLYDYQEFKAMIGHLNKATHF----SPSVLSNHLINSPFYRQRLNEIYKNSIG 67
           +P+   S LYD  E +A+   LNKA       SP+++S   + SPFY QRL+ IYK +  
Sbjct: 38  SPRHNGSTLYDSFELRAVTNQLNKAIQSLNCSSPTLMS--YLKSPFYGQRLDSIYKENAK 97

Query: 68  STKKIMWYETGRQKGNIETSKRRTKQRGMISNASLAGRLWKQIKVGLMGILPKKD 119
           + KKIM  +  R+  +I+    RT   G++S      RLWK++K GL+    + D
Sbjct: 98  TPKKIMGSQLARR--SIDKRASRTAGGGLMS------RLWKKVKQGLLWSKQRND 142

[Close]
BLAST of CSPI04G11730 vs. NCBI nr
Match: gi|223546289|gb|EEF47791.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 58.5 bits (140), Expect = 9.1e-06
Identity = 37/107 (34.58%), Postives = 58/107 (54.21%), Query Frame = 1 

Query: 9   PKDCHSNLYDYQEFKAMIGHLNKATHF----SPSVLSNHLINSPFYRQRLNEIYKNSIGS 68
           P+   S LYD  EF+A+   LNKA       SP+ +S   + SPFY  RL+ IYK +  +
Sbjct: 39  PRHNGSTLYDSYEFRAVTEQLNKAMQSLNSSSPTFMS--YLKSPFYSHRLDSIYKENSET 98

Query: 69  TKKIMWYETGRQKGNIETSKRRTKQRGMISNASLAGRLWKQIKVGLM 112
            K+IM     ++     + K+ +++   + +   A RLWK+IK GL+
Sbjct: 99  QKRIMCSRINQR----YSDKKASRKGSRVMSGGFASRLWKKIKEGLL 139

The following BLAST results are available for this feature:
BLAST of CSPI04G11730 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI04G11730 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KW83_CUCSA2.8e-62100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G179690 PE=4 SV=1[more]
A0A067K525_JATCU1.7e-0636.52Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11697 PE=4 SV=1[more]
B9RLR6_RICCO6.4e-0634.58Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1470430 PE=4 SV=1[more]
BLAST of CSPI04G11730 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI04G11730 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198727|gb|KGN53885.1|4.0e-62100.00hypothetical protein Csa_4G179690 [Cucumis sativus][more]
gi|643721057|gb|KDP31321.1|2.4e-0636.52hypothetical protein JCGZ_11697 [Jatropha curcas][more]
gi|223546289|gb|EEF47791.1|9.1e-0634.58conserved hypothetical protein [Ricinus communis][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G11730.1CSPI04G11730.1mRNA