CsGy4G009110 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy4G009110
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Polyadenylate-binding protein 2
Location	Chr4 : 7338518 .. 7343405 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCACGACGACGTCGACATGATTGGCTCCGACGCAAACGACGCTGTGGTTCCTTTCCTTTTTCTTCTCTTTCAATTCCATTCCCTATTCTTCTTCCTCTTCTTTCTCTTCTTCTTCTTCTTCTTCGTTTATAAACCCTAATTTCTCTCCTCCCTTTTCTTCCTCTTTCAGGAGTTGGACGACATGAAGAAGCGGTTAAAAGACATGGAAGACGAAGCTGCTGCTCTACGTGAGATGCAGGCCAAGGTCGAGAAGGAAATGAGTTCTGTACAAGGTTGCTTTCGCCCCGGCTCCCTATTACTTTTTCTATTTTTCCCACCATCTCCTTCACATATGGAATCCGTCTTATTTTCTGAATTTTTTAATTTCTAACTTCAGTTTTGTGCTGGAGTTGTTTTTTTCATTATTATCATTATTATTATTATTATTCTGAATGTCGTCTTTTGATCCAATGCAACTCGAAAATGTTAAGGAAATGTCTACATTTTGGAGGAAAGGCGCATTTGGATCTAATGCGAAAAACTGGACCTTGTACTTGAATTTCTTATTGTTCCAATTCATTAACTCTGAGAGATTAGGAGAAGTTTGCTAGTTCCTTTTGCTGTTTGATTAAAAAAGAATGCCTTAGTTTGTGCCTTTGCGATTATGGTGACTTCATCTATCGTACAAAAGAAGTTCTATCTGTCTGTTACCGTTAAACATTTGTCCATTTTATGTACTATCAGATCCTGCAAGTGCTGCTGCAAGTCAAGCAAATAGGGAGGAGGTGGATTCACGGTCAGTGTTTGTTGGCAATGTACGATCTCTTTATCCTTTCACCAAATATTACATTCTTTTTTTCATATTTATCCAGTCGCTTGCTTTGGTCACACAATTAGTTTGGTTTATTGGGTGAAGGGGCTGTCTCTGTTCATGTTAAATTCTTGAACAATATCAGCTTTGTTGTTGTCCAGAGACTTAACTTACCTGGAGGCTATATGTTTCCATTTAATTAATAACTAACTGTTTCTTATTTATATACAACAATGACAATGGAAGACTTTTCCAATTTTCTTAGTTCCATTGTTTGAAATAACTTCAGGATTATGTCCTAACTGTTTGCACTACCTTCTAGTTTTACTGGATTTGTTATTTCTATTTAATTCCTTCATCGTGAAGGGAACCTTAAGTGGCTCTTCTTTAGCCTTTTCTTTTTCTCCGTGAATTTCGTATGATGAATGGGGCAATCTTATTATTGATGTATTTATCAACCTTTCTTATTTTAAGTGGATTGAAGTTATTAGCACTGCTAACTGGAGGTAAAGGGCACTACTTACTCAAGAGATGTATTCTTTGTTAAATAATAGAGGACTTCTTGAGCATGATTTTCAGTGTTTTCTTTTAGAGTTAATTTATTGATTCTTGACATGGATTAAGATTTCACTGTCTAATTTTCATTGGTCATGTGGTCATAAAGATTTATTAAATTTCAGTTAGATATAATTTGTTCCTTTTGGTTCATATCATTCATGGCTTGGGAAGAGGTTGTGTTATGCTTTCCATTTTGAGGATGTTGAAGTGGTTGGATGCATTGAAATGTTTGGAGGGATCGTTTGGCTATTATATATTGTCATGCCTCTTAAGAACATTGAAAAGTATAAACCACTATTAGGAATATTTTCTCGATAGATTATTCTGTACAATGCAGATGGTTACATTTTAAATATTATGACCCATTTCTGCACTGTGCTTGAAATTTGAGTATATGTTGGTGTTTTTAGCCTGATTTGACTTCCGTCTTTGACTGCAATTACAGGTTAGGCTTACTTCATCAGGTTTTCTGATTACCTATTGCTGAAGTCGGATATTCTCTGATATGTTATAAAGATAGCTATTTAGTATATTAAAAAAAAGTGTCTTGTCCCAAAAGAAAGAACAGATTAAAAAAAAATGATAAATCAAGAAGGATAAGGTGTATCATTTGCAAGAGGTTAACAGTTTTGGTTGAATCTTTTGAAAAGGGTGATGCAAGAAAATTGTTGAGATCAGTTAACAAGAGAAAGTATGCCTAAATGTCTAGTAGTTCATGTCCTGTGTGGGCTCAGAGTTAGTCAATCTAACATGTCTCAAGTTTGAGGCCATGAGGGTAATGTGGGAAAGGAGTTATTAAAAGAAACAGAGGGAAAAAGAGGAATAGACTCACCAGCATAGAATAGTGTATGTGTGACTATGGATAAGGTCAGCAGAAGTTTTTCTGGCTTTCTTGATTGAACTGGAATGGAGAGGGCTTGCAAGTTTTGAAGGGAAGTAATATGCATTCACAACTAAGGAAGACTAGCTGTTGCGCTGAGGTATGTTATTGTCTTGTGTTGAAGCCAGCATTTGTGACCACTGTTCGAGGATTGTTTAAGTGATTTACAATTTATGGTGAGAAACCTCCAAATATCTCTGATTTTCCTCTCTTCCTTCCTTAATCCATCAAGGAAAGGAAAAAAACGTAAATAGGGAAGCTTTTATGCCTATTTCTACTTGTGGGAAATTTTCATTTTTCTTACCTTCGTAAATAGCCCCCATTCAGTCAATTTTTAGCTTTGAAGTTTTAGATTCATCAAGTTAAATTCCAGGTTCGTATAGGTTATAAAATTAATACCTTCCTTGATATAAATTAGAAGAATCTTAAATAACTAACTGATAAATTATTCAAAATCTAACCAACCAACCCAAAGTACTGCTCAGAAAAAATCTAGAAACTGATCCAATGAAAAGACGTTCCTGCACAGCAATTAGCAATTATAAATGGTCTTTTTCTCCAATCACAAGGCCCCGCACTTCAACCTTATATCTCAAAAACAAAGAAAAAGAAGACTGACACGGGGTTTTAATTTGAACTTATATTCAGTTTCAGTTGGATGAAATTAAATTTTAAAATTAAATTGGAGTCATTCAGTTAAGTACCAGGGTAAGATTGTTTTTCTGTTTTAGTAGGAGAAATATCCCCCCTTACCATGGCCATGGGTCACAAGAACTATTAGTCATCTAGGTTCTTACAAGAGAACAAATGTGGTGAAATTTTTCATGAATGAGTGTCCGCATTTGGAATTAGAAGGGGGCCTATTATTGTGAAAGATTGGGACATGAACTTTTCCTTGATTAATTAAATTTTTCTTCCAGTTTTTTACAGGGTGATGTACAATCACAGTGATTATGAAAATGCTTGCCTTGTTTTATCGATTAAAATATTTGTGAGATTTATATTGTACTGATGTTGATAAAATATAAGTTAACTAATAGACATGAACTGTGCAAGTCCTATTTTCTTGGTTTTTCTGTGGTATGACAAATGTTTTGAGCTGCATTTGTAACAGGTTGACTACTCATGTACACCAGAAGAAGTACAGCAACATTTCCAGTCATGCGGGACTGTAAACAGAATCACTATTCGCACTGATAAGTTTGGGCAACCGAAGGGTTATGCATATGTTGAATTTGTTGAGCCAGAAGCTGTTCAAGAGGCTCTCCTTCTGAATGAATCAGAACTGCATGGTCGGCAGCTTAAGGTTAATATAATTTTTAGATATCTTGATTATTGTGTGCTTATTATATATTACTTGATTAAAAAGAAAAAAACATAATCTTTATATATTACTTGATTAGTGTGTATTTAAGATTCTTCTAGTGAATTATGCACATTTAAGCATGTTGCAGGTAACTGCCAAGAGGACAAACATACCTGGGATGAAGCAGTATCGTCCACGCCGATCCAATCCATTTATGGGTGCACGATCCAGGAGTCCATATGTTGCTCCTTATTTCTTCTCACCATATGGATACGGGTATGATTGGTGAATAAAAATTTTCAATGCAAACAGCTTGAGTCTCATGCTTCTCATCATAGTCATTTAGCATAGTTCTATCTGTTGCAGGAAAGTCCCGAGGTTCAGAATGCCAACGCGTTACGGCCCCTACTATTGAATGTTAATTTTGTTTTTGGGCATTGTTGAATTAGAGATATCGCACTTAAATGTGTCTGCATGCCCTTTTTCTTTCTTTATGATGGAAATTGATGTTTGGATATAATTTTAAGAGATCTTTTCTGTTTAAAAAGAAAGTGTGTTCGCAAGCATGATGCAGGGTTCGATCACTTTGAGCCTCGACCATTCACAAGCATCACTGCATATAGAAGAAAGCTTCTCTGGACTTCAGTGCTGGTAAGTTTTCAAGACCTAAGTATTCATTTTGGATATGTGCATGTTGTTCGGAGTTAAAAATAGAATCCAATACATTCTGGTATGAAACCGTTTTTATTATTAGTGCTTGCTATTTTGATTTGATTCTGTGCATGGATTTCATTTATTTGGCTTTGTTTGCCCCCATCTGATCTATTTCGGTTGTACAAGTCTTGGTTTCAAGAACAATAATCGATTATCTACCCAAGTCTCTTTTTCTTTTTCCATCGGCTTTTTACTCCGTATTTGTTTTAATGTTTGCAATTATCTCTATTCATAGATTGTATACTTTGACTTGTCGTTCTTTATTTGTAATATTGAAAAGGAAAAAAGGGTTCTTGGCTTTGGGGGTTTCATTTCATTTGTGCAAAGCGCCAAAGTATGTTCCTAGATTCTAAATGTATATAATTTGATCTTGAAATTTTCAGTCCAAAATGTTGAATATCTATGGTTATGGTTTTTGTTTCTGTATTTTAGTTATTGTAATATATTTTGATTGATTTCTTGAACATCCTCCAATATGTATTCAGGGTTATGTTCAATTGACTGATGACTTCCGCTCTCCAAGTTTTAAAGGTCGTTTTGGTTTTCATCATAGTTCCGATAAAGTAGTATGCAACAATTTTCAAATGCTTATTCTAATAATTTTGTTTTTTAAACTTTTTAGAAATGTTTTTTAA

mRNA sequence

ATGGAGCACGACGACGTCGACATGATTGGCTCCGACGCAAACGACGCTGTGGAGTTGGACGACATGAAGAAGCGGTTAAAAGACATGGAAGACGAAGCTGCTGCTCTACGTGAGATGCAGGCCAAGGTCGAGAAGGAAATGAGTTCTGTACAAGATCCTGCAAGTGCTGCTGCAAGTCAAGCAAATAGGGAGGAGGTGGATTCACGGGTGATGTACAATCACAGTGATTATGAAAATGCTTGCCTTGTTGACTACTCATGTACACCAGAAGAAGTACAGCAACATTTCCAGTCATGCGGGACTGTAAACAGAATCACTATTCGCACTGATAAGTTTGGGCAACCGAAGGGTTATGCATATGTTGAATTTGTTGAGCCAGAAGCTGTTCAAGAGGCTCTCCTTCTGAATGAATCAGAACTGCATGGTCGGCAGCTTAAGGTAACTGCCAAGAGGACAAACATACCTGGGATGAAGCAGTATCGTCCACGCCGATCCAATCCATTTATGGGTGCACGATCCAGGAGTCCATATGTTGCTCCTTATTTCTTCTCACCATATGGATACGGAAATGTTTTTTAA

Coding sequence (CDS)

ATGGAGCACGACGACGTCGACATGATTGGCTCCGACGCAAACGACGCTGTGGAGTTGGACGACATGAAGAAGCGGTTAAAAGACATGGAAGACGAAGCTGCTGCTCTACGTGAGATGCAGGCCAAGGTCGAGAAGGAAATGAGTTCTGTACAAGATCCTGCAAGTGCTGCTGCAAGTCAAGCAAATAGGGAGGAGGTGGATTCACGGGTGATGTACAATCACAGTGATTATGAAAATGCTTGCCTTGTTGACTACTCATGTACACCAGAAGAAGTACAGCAACATTTCCAGTCATGCGGGACTGTAAACAGAATCACTATTCGCACTGATAAGTTTGGGCAACCGAAGGGTTATGCATATGTTGAATTTGTTGAGCCAGAAGCTGTTCAAGAGGCTCTCCTTCTGAATGAATCAGAACTGCATGGTCGGCAGCTTAAGGTAACTGCCAAGAGGACAAACATACCTGGGATGAAGCAGTATCGTCCACGCCGATCCAATCCATTTATGGGTGCACGATCCAGGAGTCCATATGTTGCTCCTTATTTCTTCTCACCATATGGATACGGAAATGTTTTTTAA

Protein sequence

MEHDDVDMIGSDANDAVELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQDPASAAASQANREEVDSRVMYNHSDYENACLVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVEPEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYGYGNVF

Homology

[Close]

BLAST of CsGy4G009110 vs. NCBI nr
Match: XP_011653388.1 (PREDICTED: polyadenylate-binding protein 2-like isoform X3 [Cucumis sativus] >KGN53719.1 hypothetical protein Csa_4G110060 [Cucumis sativus])

HSP 1 Score: 338.2 bits (866), Expect = 1.8e-89
Identity = 177/191 (92.67%), Postives = 180/191 (94.24%), Query Frame = 0


Query: 1   MEHDDVDMIGSDANDAVELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQDPASAAASQ 60
           MEHDDVDMIGSDANDAVELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQDPASAAASQ
Sbjct: 1   MEHDDVDMIGSDANDAVELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQDPASAAASQ 60

Query: 61  ANREEVDSRVMYNHSDYENACLVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAY 120
           ANREEVDSR ++  +       VDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAY
Sbjct: 61  ANREEVDSRSVFVGN-------VDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAY 120

Query: 121 VEFVEPEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAP 180
           VEFVEPEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAP
Sbjct: 121 VEFVEPEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAP 180

Query: 181 YFFSPYGYGNV 192
           YFFSPYGYG V
Sbjct: 181 YFFSPYGYGKV 184

[Close]

BLAST of CsGy4G009110 vs. NCBI nr
Match: XP_011653386.1 (PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Cucumis sativus])

HSP 1 Score: 338.2 bits (866), Expect = 1.8e-89
Identity = 176/191 (92.15%), Postives = 181/191 (94.76%), Query Frame = 0


Query: 1   MEHDDVDMIGSDANDAVELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQDPASAAASQ 60
           MEHDDVDMIGSDANDAVELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQDPASAAASQ
Sbjct: 1   MEHDDVDMIGSDANDAVELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQDPASAAASQ 60

Query: 61  ANREEVDSRVMYNHSDYENACLVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAY 120
           ANREEVDSR ++  +       VDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAY
Sbjct: 61  ANREEVDSRSVFVGN-------VDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAY 120

Query: 121 VEFVEPEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAP 180
           VEFVEPEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAP
Sbjct: 121 VEFVEPEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAP 180

Query: 181 YFFSPYGYGNV 192
           YFFSPYGYG++
Sbjct: 181 YFFSPYGYGSI 184

[Close]

BLAST of CsGy4G009110 vs. NCBI nr
Match: XP_008462873.1 (PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Cucumis melo])

HSP 1 Score: 336.3 bits (861), Expect = 7.0e-89
Identity = 174/191 (91.10%), Postives = 180/191 (94.24%), Query Frame = 0


Query: 1   MEHDDVDMIGSDANDAVELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQDPASAAASQ 60
           MEHDD+DMIGSD NDAVELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQDPASAAASQ
Sbjct: 1   MEHDDIDMIGSDTNDAVELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQDPASAAASQ 60

Query: 61  ANREEVDSRVMYNHSDYENACLVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAY 120
           ANREEVDSR ++  +       VDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAY
Sbjct: 61  ANREEVDSRSVFVGN-------VDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAY 120

Query: 121 VEFVEPEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAP 180
           VEFVEPEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAP
Sbjct: 121 VEFVEPEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAP 180

Query: 181 YFFSPYGYGNV 192
           YFFSPYGYG++
Sbjct: 181 YFFSPYGYGSI 184

[Close]

BLAST of CsGy4G009110 vs. NCBI nr
Match: XP_008462875.1 (PREDICTED: polyadenylate-binding protein 2-like isoform X2 [Cucumis melo])

HSP 1 Score: 336.3 bits (861), Expect = 7.0e-89
Identity = 175/191 (91.62%), Postives = 179/191 (93.72%), Query Frame = 0


Query: 1   MEHDDVDMIGSDANDAVELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQDPASAAASQ 60
           MEHDD+DMIGSD NDAVELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQDPASAAASQ
Sbjct: 1   MEHDDIDMIGSDTNDAVELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQDPASAAASQ 60

Query: 61  ANREEVDSRVMYNHSDYENACLVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAY 120
           ANREEVDSR ++  +       VDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAY
Sbjct: 61  ANREEVDSRSVFVGN-------VDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAY 120

Query: 121 VEFVEPEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAP 180
           VEFVEPEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAP
Sbjct: 121 VEFVEPEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAP 180

Query: 181 YFFSPYGYGNV 192
           YFFSPYGYG V
Sbjct: 181 YFFSPYGYGKV 184

[Close]

BLAST of CsGy4G009110 vs. NCBI nr
Match: XP_004137160.1 (PREDICTED: polyadenylate-binding protein 2-like isoform X4 [Cucumis sativus])

HSP 1 Score: 332.0 bits (850), Expect = 1.3e-87
Identity = 176/191 (92.15%), Postives = 179/191 (93.72%), Query Frame = 0


Query: 1   MEHDDVDMIGSDANDAVELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQDPASAAASQ 60
           MEHDDVDMIGSDANDA ELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQDPASAAASQ
Sbjct: 1   MEHDDVDMIGSDANDA-ELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQDPASAAASQ 60

Query: 61  ANREEVDSRVMYNHSDYENACLVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAY 120
           ANREEVDSR ++  +       VDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAY
Sbjct: 61  ANREEVDSRSVFVGN-------VDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAY 120

Query: 121 VEFVEPEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAP 180
           VEFVEPEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAP
Sbjct: 121 VEFVEPEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAP 180

Query: 181 YFFSPYGYGNV 192
           YFFSPYGYG V
Sbjct: 181 YFFSPYGYGKV 183

[Close]

BLAST of CsGy4G009110 vs. TAIR10
Match: AT5G10350.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 247.7 bits (631), Expect = 5.9e-66
Identity = 128/185 (69.19%), Postives = 149/185 (80.54%), Query Frame = 0


Query: 5   DVDMIGSDANDAVELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQDPASAAASQANRE 64
           D+DM  +D +   EL +MK+RLK+ME+EAAALREMQAKVEKEM + QDPAS AA+Q  +E
Sbjct: 25  DIDMSAADEDAVTELAEMKRRLKEMEEEAAALREMQAKVEKEMGATQDPASMAANQEGKE 84

Query: 65  EVDSRVMYNHSDYENACLVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFV 124
           EVD+R +Y  +       VDY+CTPEEVQ HFQ+CGTVNR+TI  DKFGQPKG+AYVEFV
Sbjct: 85  EVDARSVYVGN-------VDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFV 144

Query: 125 EPEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFS 184
           E EAVQEAL LNESELHGRQLKV+ KRTN+PGMKQY P R NP MG R R P+V PYF+S
Sbjct: 145 EVEAVQEALQLNESELHGRQLKVSPKRTNVPGMKQYHPGRFNPSMGYRFRRPFVPPYFYS 202

Query: 185 PYGYG 190
           PYGYG
Sbjct: 205 PYGYG 202

[Close]

BLAST of CsGy4G009110 vs. TAIR10
Match: AT5G65260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 210.3 bits (534), Expect = 1.0e-54
Identity = 107/152 (70.39%), Postives = 127/152 (83.55%), Query Frame = 0


Query: 38  EMQAKVEKEMSSVQDPASAAASQANREEVDSRVMYNHSDYENACLVDYSCTPEEVQQHFQ 97
           EMQAKVEKEM + QDPAS AA+QA +EEVD+R ++  +       VDY+CTPEEVQQHFQ
Sbjct: 62  EMQAKVEKEMGA-QDPASIAANQAGKEEVDARSVFVGN-------VDYACTPEEVQQHFQ 121

Query: 98  SCGTVNRITIRTDKFGQPKGYAYVEFVEPEAVQEALLLNESELHGRQLKVTAKRTNIPGM 157
           +CGTV+R+TI TDKFGQPKG+AYVEFVE EAVQEAL LNESELHGRQLKV  KRTN+PG+
Sbjct: 122 TCGTVHRVTILTDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVLQKRTNVPGL 181

Query: 158 KQYRPRRSNPFMGARSRSPYVAPYFFSPYGYG 190
           KQ+R RR NP+MG R R P+++PY +SPYGYG
Sbjct: 182 KQFRGRRFNPYMGYRFRRPFMSPYMYSPYGYG 205

[Close]

BLAST of CsGy4G009110 vs. TAIR10
Match: AT5G51120.2 (polyadenylate-binding protein 1)

HSP 1 Score: 185.7 bits (470), Expect = 2.8e-47
Identity = 112/219 (51.14%), Postives = 137/219 (62.56%), Query Frame = 0


Query: 10  GSDANDAVELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQ------------------ 69
           GS + D   L+DMKKR+K++E+EA ALREMQAK EK+M + Q                  
Sbjct: 48  GSSSRD---LEDMKKRIKEIEEEAGALREMQAKAEKDMGASQGLKLVLLIMILLWVYILE 107

Query: 70  -------------------DPASAAASQANREEVDSRVMYNHSDYENACLVDYSCTPEEV 129
                              +  ++  S A +EEVDSR +Y  +       VDY+CTPEEV
Sbjct: 108 SFSESMNLSRNLLEFEYEKEIINSGVSAAEKEEVDSRSIYVGN-------VDYACTPEEV 167

Query: 130 QQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVEPEAVQEALLLNESELHGRQLKVTAKRT 189
           QQHFQSCGTVNR+TI TDKFGQPKG+AYVEFVE EAVQ +L+LNESELHGRQ+KV+AKRT
Sbjct: 168 QQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSLILNESELHGRQIKVSAKRT 227

Query: 190 NIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYGYGNV 192
           N+PGM+Q+R  R  PF   R   P V   F+ PY YG V
Sbjct: 228 NVPGMRQFR-GRGRPFRPMRGFMPGVP--FYPPYAYGRV 253

[Close]

BLAST of CsGy4G009110 vs. TAIR10
Match: AT3G55460.1 (SC35-like splicing factor 30)

HSP 1 Score: 45.1 bits (105), Expect = 5.8e-05
Identity = 23/67 (34.33%), Postives = 39/67 (58.21%), Query Frame = 0


Query: 83  VDYSCTPEEVQQHFQSCGTVNRITIRTDKF-GQPKGYAYVEFVEP-EAVQEALLLNESEL 142
           +   C PEE+++ F+  G V  + I  D + GQP+G+A+VEFV+  +A +    +N    
Sbjct: 54  IPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSF 113

Query: 143 HGRQLKV 148
            GR++ V
Sbjct: 114 AGREITV 120

[Close]

BLAST of CsGy4G009110 vs. TAIR10
Match: AT3G12640.1 (RNA binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 45.1 bits (105), Expect = 5.8e-05
Identity = 31/108 (28.70%), Postives = 51/108 (47.22%), Query Frame = 0


Query: 41  AKVEKEMSSVQDPASAAASQANREEVDSRVMYNHSDYENACLVDYSCTPEEVQQHFQSCG 100
           A V++E ++ +      ++    E+  SR ++          V +  T + + +HF   G
Sbjct: 452 ASVKEESTTNKSVPGTLSTTRPLEDASSRTIF-------VANVHFGATKDSLSRHFNKFG 511

Query: 101 TVNRITIRTD-KFGQPKGYAYVEFVEPEAVQEALLLNESELHGRQLKV 148
            V +  I TD   GQP G AY+EF   EA + AL L+ +    R LK+
Sbjct: 512 EVLKAFIVTDPATGQPSGSAYIEFTRKEAAENALSLDGTSFMSRILKI 552

[Close]

BLAST of CsGy4G009110 vs. Swiss-Prot
Match: sp|Q9LX90|PABN3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=PABN3 PE=1 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 1.1e-64
Identity = 128/185 (69.19%), Postives = 149/185 (80.54%), Query Frame = 0


Query: 5   DVDMIGSDANDAVELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQDPASAAASQANRE 64
           D+DM  +D +   EL +MK+RLK+ME+EAAALREMQAKVEKEM + QDPAS AA+Q  +E
Sbjct: 25  DIDMSAADEDAVTELAEMKRRLKEMEEEAAALREMQAKVEKEMGATQDPASMAANQEGKE 84

Query: 65  EVDSRVMYNHSDYENACLVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFV 124
           EVD+R +Y  +       VDY+CTPEEVQ HFQ+CGTVNR+TI  DKFGQPKG+AYVEFV
Sbjct: 85  EVDARSVYVGN-------VDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFV 144

Query: 125 EPEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFS 184
           E EAVQEAL LNESELHGRQLKV+ KRTN+PGMKQY P R NP MG R R P+V PYF+S
Sbjct: 145 EVEAVQEALQLNESELHGRQLKVSPKRTNVPGMKQYHPGRFNPSMGYRFRRPFVPPYFYS 202

Query: 185 PYGYG 190
           PYGYG
Sbjct: 205 PYGYG 202

[Close]

BLAST of CsGy4G009110 vs. Swiss-Prot
Match: sp|Q9FJN9|PABN2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=PABN2 PE=1 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 1.9e-53
Identity = 107/152 (70.39%), Postives = 127/152 (83.55%), Query Frame = 0


Query: 38  EMQAKVEKEMSSVQDPASAAASQANREEVDSRVMYNHSDYENACLVDYSCTPEEVQQHFQ 97
           EMQAKVEKEM + QDPAS AA+QA +EEVD+R ++  +       VDY+CTPEEVQQHFQ
Sbjct: 62  EMQAKVEKEMGA-QDPASIAANQAGKEEVDARSVFVGN-------VDYACTPEEVQQHFQ 121

Query: 98  SCGTVNRITIRTDKFGQPKGYAYVEFVEPEAVQEALLLNESELHGRQLKVTAKRTNIPGM 157
           +CGTV+R+TI TDKFGQPKG+AYVEFVE EAVQEAL LNESELHGRQLKV  KRTN+PG+
Sbjct: 122 TCGTVHRVTILTDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVLQKRTNVPGL 181

Query: 158 KQYRPRRSNPFMGARSRSPYVAPYFFSPYGYG 190
           KQ+R RR NP+MG R R P+++PY +SPYGYG
Sbjct: 182 KQFRGRRFNPYMGYRFRRPFMSPYMYSPYGYG 205

[Close]

BLAST of CsGy4G009110 vs. Swiss-Prot
Match: sp|Q93VI4|PABN1_ARATH (Polyadenylate-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=PABN1 PE=1 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 2.7e-52
Identity = 115/182 (63.19%), Postives = 137/182 (75.27%), Query Frame = 0


Query: 10  GSDANDAVELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQDPASAAASQANREEVDSR 69
           GS + D   L+DMKKR+K++E+EA ALREMQAK EK+M + QDP S   S A +EEVDSR
Sbjct: 48  GSSSRD---LEDMKKRIKEIEEEAGALREMQAKAEKDMGASQDP-SGGVSAAEKEEVDSR 107

Query: 70  VMYNHSDYENACLVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVEPEAV 129
            +Y  +       VDY+CTPEEVQQHFQSCGTVNR+TI TDKFGQPKG+AYVEFVE EAV
Sbjct: 108 SIYVGN-------VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAV 167

Query: 130 QEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYGYG 189
           Q +L+LNESELHGRQ+KV+AKRTN+PGM+Q+R  R  PF   R   P V   F+ PY YG
Sbjct: 168 QNSLILNESELHGRQIKVSAKRTNVPGMRQFR-GRGRPFRPMRGFMPGVP--FYPPYAYG 215

Query: 190 NV 192
            V
Sbjct: 228 RV 215

[Close]

BLAST of CsGy4G009110 vs. Swiss-Prot
Match: sp|O14327|PAB2_SCHPO (Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=pab2 PE=1 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 5.9e-23
Identity = 53/78 (67.95%), Postives = 60/78 (76.92%), Query Frame = 0


Query: 83  VDYSCTPEEVQQHFQSCGTVNRITIRTDKF-GQPKGYAYVEFVEPEAVQEALLLNESELH 142
           VDYS TPEE+Q HF SCG+VNR+TI  DKF G PKG+AY+EF EP  V  ALLLN S LH
Sbjct: 62  VDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALLLNGSMLH 121

Query: 143 GRQLKVTAKRTNIPGMKQ 160
            R LKVT KRTN+PGM +
Sbjct: 122 ERPLKVTPKRTNVPGMSR 139

[Close]

BLAST of CsGy4G009110 vs. Swiss-Prot
Match: sp|Q7ZXB8|PAB2B_XENLA (Polyadenylate-binding protein 2-B OS=Xenopus laevis OX=8355 GN=pabpn1-b PE=2 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.6e-20
Identity = 71/193 (36.79%), Postives = 103/193 (53.37%), Query Frame = 0


Query: 8   MIGSDANDAVELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQDPASAA---ASQANRE 67
           + G    +  EL+ +K R+++ME+EA           K+M+    P +A     S   + 
Sbjct: 98  LTGDQTIEDPELEAIKARVREMEEEAXXXXXXXXXXXKQMNMSPPPGNAGPVIMSVEEKM 157

Query: 68  EVDSRVMYNHSDYENACLVDYSCTPEEVQQHFQSCGTVNRITIRTDKF-GQPKGYAYVEF 127
           E D+R +Y  +       VDY  T EE++ HF  CG+VNR+TI  DKF G PKG+AY+EF
Sbjct: 158 EADARSIYVGN-------VDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEF 217

Query: 128 VEPEAVQEALLLNESELHGRQLKVTAKRTNIPGMK---------QYRPRRSNPFMGARSR 187
            + E+V+ +L L+ES   GRQ+KV  KRTN PG+          +YR R S+      SR
Sbjct: 218 SDKESVRTSLALDESLFRGRQIKVVPKRTNRPGISTTDRGFPRARYRARASS----YSSR 277

[Close]

BLAST of CsGy4G009110 vs. TrEMBL
Match: tr|A0A0A0KXZ1|A0A0A0KXZ1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G110060 PE=4 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 1.2e-89
Identity = 177/191 (92.67%), Postives = 180/191 (94.24%), Query Frame = 0


Query: 1   MEHDDVDMIGSDANDAVELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQDPASAAASQ 60
           MEHDDVDMIGSDANDAVELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQDPASAAASQ
Sbjct: 1   MEHDDVDMIGSDANDAVELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQDPASAAASQ 60

Query: 61  ANREEVDSRVMYNHSDYENACLVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAY 120
           ANREEVDSR ++  +       VDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAY
Sbjct: 61  ANREEVDSRSVFVGN-------VDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAY 120

Query: 121 VEFVEPEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAP 180
           VEFVEPEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAP
Sbjct: 121 VEFVEPEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAP 180

Query: 181 YFFSPYGYGNV 192
           YFFSPYGYG V
Sbjct: 181 YFFSPYGYGKV 184

[Close]

BLAST of CsGy4G009110 vs. TrEMBL
Match: tr|A0A1S3CHX7|A0A1S3CHX7_CUCME (polyadenylate-binding protein 2-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103501153 PE=4 SV=1)

HSP 1 Score: 336.3 bits (861), Expect = 4.6e-89
Identity = 175/191 (91.62%), Postives = 179/191 (93.72%), Query Frame = 0


Query: 1   MEHDDVDMIGSDANDAVELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQDPASAAASQ 60
           MEHDD+DMIGSD NDAVELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQDPASAAASQ
Sbjct: 1   MEHDDIDMIGSDTNDAVELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQDPASAAASQ 60

Query: 61  ANREEVDSRVMYNHSDYENACLVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAY 120
           ANREEVDSR ++  +       VDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAY
Sbjct: 61  ANREEVDSRSVFVGN-------VDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAY 120

Query: 121 VEFVEPEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAP 180
           VEFVEPEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAP
Sbjct: 121 VEFVEPEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAP 180

Query: 181 YFFSPYGYGNV 192
           YFFSPYGYG V
Sbjct: 181 YFFSPYGYGKV 184

[Close]

BLAST of CsGy4G009110 vs. TrEMBL
Match: tr|A0A1S3CIE7|A0A1S3CIE7_CUCME (polyadenylate-binding protein 2-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103501153 PE=4 SV=1)

HSP 1 Score: 336.3 bits (861), Expect = 4.6e-89
Identity = 174/191 (91.10%), Postives = 180/191 (94.24%), Query Frame = 0


Query: 1   MEHDDVDMIGSDANDAVELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQDPASAAASQ 60
           MEHDD+DMIGSD NDAVELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQDPASAAASQ
Sbjct: 1   MEHDDIDMIGSDTNDAVELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQDPASAAASQ 60

Query: 61  ANREEVDSRVMYNHSDYENACLVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAY 120
           ANREEVDSR ++  +       VDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAY
Sbjct: 61  ANREEVDSRSVFVGN-------VDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAY 120

Query: 121 VEFVEPEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAP 180
           VEFVEPEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAP
Sbjct: 121 VEFVEPEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAP 180

Query: 181 YFFSPYGYGNV 192
           YFFSPYGYG++
Sbjct: 181 YFFSPYGYGSI 184

[Close]

BLAST of CsGy4G009110 vs. TrEMBL
Match: tr|W9QVE2|W9QVE2_9ROSA (Polyadenylate-binding protein 2 OS=Morus notabilis OX=981085 GN=L484_017178 PE=4 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 6.5e-75
Identity = 152/192 (79.17%), Postives = 168/192 (87.50%), Query Frame = 0


Query: 1   MEHDDVDMIGSDANDAVELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQDPASAAASQ 60
           MEHDDVDM G+D  +A ELDDMKKRLK+MEDEAAALREMQAKVEKEM SVQ+P++AA +Q
Sbjct: 1   MEHDDVDMTGADGTEA-ELDDMKKRLKEMEDEAAALREMQAKVEKEMGSVQEPSTAAGTQ 60

Query: 61  ANREEVDSRVMYNHSDYENACLVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAY 120
           ANREEVDSR ++  +       VDYSCTPEEVQQHFQSCGTVNR+TIRTDKFGQPKGYAY
Sbjct: 61  ANREEVDSRSVFVGN-------VDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAY 120

Query: 121 VEFVEPEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYV-A 180
           VEFVE EAVQEA+LLNESELHGRQLKV+AKRTNIPGMKQYRPRR NP+MG R RSPYV  
Sbjct: 121 VEFVEVEAVQEAILLNESELHGRQLKVSAKRTNIPGMKQYRPRRPNPYMGFRGRSPYVPP 180

Query: 181 PYFFSPYGYGNV 192
           P+ +SPYGYG V
Sbjct: 181 PFMYSPYGYGKV 184

[Close]

BLAST of CsGy4G009110 vs. TrEMBL
Match: tr|A0A1R3I7E7|A0A1R3I7E7_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_14360 PE=4 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 4.2e-74
Identity = 151/191 (79.06%), Postives = 167/191 (87.43%), Query Frame = 0


Query: 1   MEHDDVDMIGSDANDAVELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQDPASAAASQ 60
           ME DDVDM G++ N   +LDDMK+RLK+ME+EAAALREMQAKVEKEM SVQDPA+AA SQ
Sbjct: 1   MEGDDVDMAGAE-NTETDLDDMKRRLKEMEEEAAALREMQAKVEKEMGSVQDPAAAATSQ 60

Query: 61  ANREEVDSRVMYNHSDYENACLVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAY 120
           ANREEVDSR ++  +       VDYSCTPEEVQQHFQSCGTVNR+TIRTDKFGQPKGYAY
Sbjct: 61  ANREEVDSRSVFVGN-------VDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAY 120

Query: 121 VEFVEPEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAP 180
           VEF+E EAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFM  R R P++AP
Sbjct: 121 VEFLEAEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFM--RPRGPFMAP 180

Query: 181 YFFSPYGYGNV 192
           YFF+PYGYG +
Sbjct: 181 YFFAPYGYGKI 181

The following BLAST results are available for this feature:

BLAST of CsGy4G009110 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011653388.1	1.8e-89	92.67	PREDICTED: polyadenylate-binding protein 2-like isoform X3 [Cucumis sativus] >KG...	[more]
XP_011653386.1	1.8e-89	92.15	PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Cucumis sativus]	[more]
XP_008462873.1	7.0e-89	91.10	PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Cucumis melo]	[more]
XP_008462875.1	7.0e-89	91.62	PREDICTED: polyadenylate-binding protein 2-like isoform X2 [Cucumis melo]	[more]
XP_004137160.1	1.3e-87	92.15	PREDICTED: polyadenylate-binding protein 2-like isoform X4 [Cucumis sativus]	[more]

BLAST of CsGy4G009110 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G10350.1	5.9e-66	69.19	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G65260.1	1.0e-54	70.39	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G51120.2	2.8e-47	51.14	polyadenylate-binding protein 1	[more]
AT3G55460.1	5.8e-05	34.33	SC35-like splicing factor 30	[more]
AT3G12640.1	5.8e-05	28.70	RNA binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of CsGy4G009110 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LX90\|PABN3_ARATH	1.1e-64	69.19	Polyadenylate-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=PABN3 PE=1 SV...	[more]
sp\|Q9FJN9\|PABN2_ARATH	1.9e-53	70.39	Polyadenylate-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=PABN2 PE=1 SV...	[more]
sp\|Q93VI4\|PABN1_ARATH	2.7e-52	63.19	Polyadenylate-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=PABN1 PE=1 SV...	[more]
sp\|O14327\|PAB2_SCHPO	5.9e-23	67.95	Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC ...	[more]
sp\|Q7ZXB8\|PAB2B_XENLA	1.6e-20	36.79	Polyadenylate-binding protein 2-B OS=Xenopus laevis OX=8355 GN=pabpn1-b PE=2 SV=...	[more]

BLAST of CsGy4G009110 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KXZ1\|A0A0A0KXZ1_CUCSA	1.2e-89	92.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G110060 PE=4 SV=1	[more]
tr\|A0A1S3CHX7\|A0A1S3CHX7_CUCME	4.6e-89	91.62	polyadenylate-binding protein 2-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3CIE7\|A0A1S3CIE7_CUCME	4.6e-89	91.10	polyadenylate-binding protein 2-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|W9QVE2\|W9QVE2_9ROSA	6.5e-75	79.17	Polyadenylate-binding protein 2 OS=Morus notabilis OX=981085 GN=L484_017178 PE=4...	[more]
tr\|A0A1R3I7E7\|A0A1R3I7E7_COCAP	4.2e-74	79.06	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_14360 PE=4 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G009110.1	CsGy4G009110.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 19..46
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..65
None	No IPR available	PANTHER	PTHR43987:SF1	SUBFAMILY NOT NAMED	coord: 1..191
None	No IPR available	PANTHER	PTHR43987	FAMILY NOT NAMED	coord: 1..191
None	No IPR available	CDD	cd12306	RRM_II_PABPs	coord: 83..148 e-value: 2.01531E-42 score: 138.193
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 83..148 e-value: 8.6E-14 score: 61.8
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 84..146 e-value: 5.0E-14 score: 51.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 68..152 score: 13.447
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 82..156 e-value: 7.8E-22 score: 79.3
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 84..174

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy4G009110	Cla002486	Watermelon (97103) v1	cgybwmB272
CsGy4G009110	Csa4G110060	Cucumber (Chinese Long) v2	cgybcuB165
CsGy4G009110	MELO3C024821	Melon (DHL92) v3.5.1	cgybmeB273
CsGy4G009110	ClCG10G009330	Watermelon (Charleston Gray)	cgybwcgB253
CsGy4G009110	CSPI04G09340	Wild cucumber (PI 183967)	cgybcpiB168
CsGy4G009110	CmaCh16G002630	Cucurbita maxima (Rimu)	cgybcmaB495
CsGy4G009110	CmaCh04G004050	Cucurbita maxima (Rimu)	cgybcmaB545
CsGy4G009110	CmoCh04G004330	Cucurbita moschata (Rifu)	cgybcmoB528
CsGy4G009110	CmoCh16G002650	Cucurbita moschata (Rifu)	cgybcmoB468
CsGy4G009110	Lsi03G009550	Bottle gourd (USVL1VR-Ls)	cgyblsiB259
CsGy4G009110	Cp4.1LG01g03140	Cucurbita pepo (Zucchini)	cgybcpeB505
CsGy4G009110	Cp4.1LG14g05270	Cucurbita pepo (Zucchini)	cgybcpeB488
CsGy4G009110	MELO3C024821.2	Melon (DHL92) v3.6.1	cgybmedB271
CsGy4G009110	CsaV3_4G009500	Cucumber (Chinese Long) v3	cgybcucB171
CsGy4G009110	Cla97C10G192490	Watermelon (97103) v2	cgybwmbB261
CsGy4G009110	Carg08080	Silver-seed gourd	carcgybB0384
CsGy4G009110	Carg16787	Silver-seed gourd	carcgybB0861

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy4G009110	Cucurbita moschata (Rifu)	cgybcmoB518
CsGy4G009110	Cucurbita pepo (Zucchini)	cgybcpeB518
CsGy4G009110	Silver-seed gourd	carcgybB0386
CsGy4G009110	Wax gourd	cgybwgoB344